Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01052:0554
Extra
PDB:
ATOM 1 O3' A A1051 6.061 106.292 97.508 1.00 47.81 O
ATOM 2 P G A1052 6.536 106.179 99.029 1.00 49.17 P
ATOM 3 OP1 G A1052 5.930 107.343 99.719 1.00 50.28 O
ATOM 4 OP2 G A1052 8.009 105.999 99.052 1.00 46.56 O
ATOM 5 O5' G A1052 5.864 104.822 99.542 1.00 48.39 O
ATOM 6 C5' G A1052 4.457 104.755 99.840 1.00 46.31 C
ATOM 7 C4' G A1052 4.056 103.351 100.226 1.00 46.81 C
ATOM 8 O4' G A1052 4.462 102.443 99.171 1.00 48.71 O
ATOM 9 C3' G A1052 4.685 102.741 101.471 1.00 48.20 C
ATOM 10 O3' G A1052 4.029 103.112 102.678 1.00 48.41 O
ATOM 11 C2' G A1052 4.480 101.256 101.227 1.00 49.74 C
ATOM 12 O2' G A1052 3.148 100.868 101.510 1.00 50.67 O
ATOM 13 C1' G A1052 4.750 101.161 99.723 1.00 49.62 C
ATOM 14 N9 G A1052 6.139 100.820 99.415 1.00 48.55 N
ATOM 15 C8 G A1052 7.134 101.690 99.045 1.00 50.17 C
ATOM 16 N7 G A1052 8.280 101.102 98.835 1.00 50.27 N
ATOM 17 C5 G A1052 8.031 99.760 99.081 1.00 49.39 C
ATOM 18 C6 G A1052 8.906 98.634 99.026 1.00 49.48 C
ATOM 19 O6 G A1052 10.108 98.600 98.732 1.00 48.91 O
ATOM 20 N1 G A1052 8.246 97.462 99.363 1.00 48.79 N
ATOM 21 C2 G A1052 6.923 97.375 99.707 1.00 49.49 C
ATOM 22 N2 G A1052 6.479 96.148 99.997 1.00 49.97 N
ATOM 23 N3 G A1052 6.095 98.413 99.762 1.00 49.02 N
ATOM 24 C4 G A1052 6.713 99.566 99.440 1.00 48.19 C
ATOM 25 P G A1053 4.830 103.039 104.074 1.00 49.18 P
ATOM 26 OP1 G A1053 3.870 103.395 105.144 1.00 47.65 O
ATOM 27 OP2 G A1053 6.071 103.844 103.918 1.00 51.45 O
ATOM 28 O5' G A1053 5.272 101.507 104.221 1.00 47.53 O
TER
ATOM 1 O3' A B 553 -0.769 91.466 97.867 1.00 53.44 O
ATOM 2 P A B 554 -0.888 90.944 99.386 1.00 55.93 P
ATOM 3 OP1 A B 554 -1.068 89.462 99.325 1.00 54.95 O
ATOM 4 OP2 A B 554 -1.868 91.781 100.130 1.00 54.39 O
ATOM 5 O5' A B 554 0.539 91.244 100.028 1.00 53.74 O
ATOM 6 C5' A B 554 1.730 90.596 99.547 1.00 48.78 C
ATOM 7 C4' A B 554 2.939 91.399 99.939 1.00 45.48 C
ATOM 8 O4' A B 554 2.817 92.729 99.372 1.00 47.43 O
ATOM 9 C3' A B 554 3.059 91.667 101.423 1.00 44.67 C
ATOM 10 O3' A B 554 3.652 90.583 102.095 1.00 43.37 O
ATOM 11 C2' A B 554 3.927 92.911 101.450 1.00 45.57 C
ATOM 12 O2' A B 554 5.278 92.612 101.163 1.00 46.80 O
ATOM 13 C1' A B 554 3.340 93.691 100.278 1.00 45.43 C
ATOM 14 N9 A B 554 2.251 94.580 100.683 1.00 43.42 N
ATOM 15 C8 A B 554 0.917 94.283 100.764 1.00 42.99 C
ATOM 16 N7 A B 554 0.178 95.278 101.180 1.00 43.53 N
ATOM 17 C5 A B 554 1.085 96.307 101.382 1.00 44.18 C
ATOM 18 C6 A B 554 0.931 97.636 101.822 1.00 43.81 C
ATOM 19 N6 A B 554 -0.244 98.176 102.154 1.00 44.16 N
ATOM 20 N1 A B 554 2.039 98.401 101.909 1.00 42.93 N
ATOM 21 C2 A B 554 3.214 97.862 101.579 1.00 43.07 C
ATOM 22 N3 A B 554 3.488 96.630 101.154 1.00 45.22 N
ATOM 23 C4 A B 554 2.366 95.892 101.075 1.00 44.39 C
ATOM 24 P U B 555 3.076 90.137 103.519 1.00 43.43 P
ATOM 25 OP1 U B 555 4.000 89.111 104.063 1.00 41.18 O
ATOM 26 OP2 U B 555 1.645 89.806 103.322 1.00 44.15 O
ATOM 27 O5' U B 555 3.154 91.453 104.411 1.00 40.80 O
TER
ATOM 2 P G A1052 6.536 106.179 99.029 1.00 49.17 P
ATOM 3 OP1 G A1052 5.930 107.343 99.719 1.00 50.28 O
ATOM 4 OP2 G A1052 8.009 105.999 99.052 1.00 46.56 O
ATOM 5 O5' G A1052 5.864 104.822 99.542 1.00 48.39 O
ATOM 6 C5' G A1052 4.457 104.755 99.840 1.00 46.31 C
ATOM 7 C4' G A1052 4.056 103.351 100.226 1.00 46.81 C
ATOM 8 O4' G A1052 4.462 102.443 99.171 1.00 48.71 O
ATOM 9 C3' G A1052 4.685 102.741 101.471 1.00 48.20 C
ATOM 10 O3' G A1052 4.029 103.112 102.678 1.00 48.41 O
ATOM 11 C2' G A1052 4.480 101.256 101.227 1.00 49.74 C
ATOM 12 O2' G A1052 3.148 100.868 101.510 1.00 50.67 O
ATOM 13 C1' G A1052 4.750 101.161 99.723 1.00 49.62 C
ATOM 14 N9 G A1052 6.139 100.820 99.415 1.00 48.55 N
ATOM 15 C8 G A1052 7.134 101.690 99.045 1.00 50.17 C
ATOM 16 N7 G A1052 8.280 101.102 98.835 1.00 50.27 N
ATOM 17 C5 G A1052 8.031 99.760 99.081 1.00 49.39 C
ATOM 18 C6 G A1052 8.906 98.634 99.026 1.00 49.48 C
ATOM 19 O6 G A1052 10.108 98.600 98.732 1.00 48.91 O
ATOM 20 N1 G A1052 8.246 97.462 99.363 1.00 48.79 N
ATOM 21 C2 G A1052 6.923 97.375 99.707 1.00 49.49 C
ATOM 22 N2 G A1052 6.479 96.148 99.997 1.00 49.97 N
ATOM 23 N3 G A1052 6.095 98.413 99.762 1.00 49.02 N
ATOM 24 C4 G A1052 6.713 99.566 99.440 1.00 48.19 C
ATOM 25 P G A1053 4.830 103.039 104.074 1.00 49.18 P
ATOM 26 OP1 G A1053 3.870 103.395 105.144 1.00 47.65 O
ATOM 27 OP2 G A1053 6.071 103.844 103.918 1.00 51.45 O
ATOM 28 O5' G A1053 5.272 101.507 104.221 1.00 47.53 O
TER
ATOM 1 O3' A B 553 -0.769 91.466 97.867 1.00 53.44 O
ATOM 2 P A B 554 -0.888 90.944 99.386 1.00 55.93 P
ATOM 3 OP1 A B 554 -1.068 89.462 99.325 1.00 54.95 O
ATOM 4 OP2 A B 554 -1.868 91.781 100.130 1.00 54.39 O
ATOM 5 O5' A B 554 0.539 91.244 100.028 1.00 53.74 O
ATOM 6 C5' A B 554 1.730 90.596 99.547 1.00 48.78 C
ATOM 7 C4' A B 554 2.939 91.399 99.939 1.00 45.48 C
ATOM 8 O4' A B 554 2.817 92.729 99.372 1.00 47.43 O
ATOM 9 C3' A B 554 3.059 91.667 101.423 1.00 44.67 C
ATOM 10 O3' A B 554 3.652 90.583 102.095 1.00 43.37 O
ATOM 11 C2' A B 554 3.927 92.911 101.450 1.00 45.57 C
ATOM 12 O2' A B 554 5.278 92.612 101.163 1.00 46.80 O
ATOM 13 C1' A B 554 3.340 93.691 100.278 1.00 45.43 C
ATOM 14 N9 A B 554 2.251 94.580 100.683 1.00 43.42 N
ATOM 15 C8 A B 554 0.917 94.283 100.764 1.00 42.99 C
ATOM 16 N7 A B 554 0.178 95.278 101.180 1.00 43.53 N
ATOM 17 C5 A B 554 1.085 96.307 101.382 1.00 44.18 C
ATOM 18 C6 A B 554 0.931 97.636 101.822 1.00 43.81 C
ATOM 19 N6 A B 554 -0.244 98.176 102.154 1.00 44.16 N
ATOM 20 N1 A B 554 2.039 98.401 101.909 1.00 42.93 N
ATOM 21 C2 A B 554 3.214 97.862 101.579 1.00 43.07 C
ATOM 22 N3 A B 554 3.488 96.630 101.154 1.00 45.22 N
ATOM 23 C4 A B 554 2.366 95.892 101.075 1.00 44.39 C
ATOM 24 P U B 555 3.076 90.137 103.519 1.00 43.43 P
ATOM 25 OP1 U B 555 4.000 89.111 104.063 1.00 41.18 O
ATOM 26 OP2 U B 555 1.645 89.806 103.322 1.00 44.15 O
ATOM 27 O5' U B 555 3.154 91.453 104.411 1.00 40.80 O
TER
Atoms:
OP1: (5.930,107.343,99.719)
OP2: (8.009,105.999,99.052)
C3': (4.685,102.741,101.471)
C1': (4.750,101.161,99.723)
C5': (4.457,104.755,99.840)
O6: (10.108,98.600,98.732)
O4': (4.462,102.443,99.171)
C8: (7.134,101.690,99.045)
C2: (6.923,97.375,99.707)
C6: (8.906,98.634,99.026)
C5: (8.031,99.760,99.081)
C4: (6.713,99.566,99.440)
P: (6.536,106.179,99.029)
C4': (4.056,103.351,100.226)
C2': (4.480,101.256,101.227)
O2': (3.148,100.868,101.510)
N1: (8.246,97.462,99.363)
N2: (6.479,96.148,99.997)
N3: (6.095,98.413,99.762)
N7: (8.280,101.102,98.835)
N9: (6.139,100.820,99.415)
O5': (5.864,104.822,99.542)
O3': (4.029,103.112,102.678)
OP2: (8.009,105.999,99.052)
C3': (4.685,102.741,101.471)
C1': (4.750,101.161,99.723)
C5': (4.457,104.755,99.840)
O6: (10.108,98.600,98.732)
O4': (4.462,102.443,99.171)
C8: (7.134,101.690,99.045)
C2: (6.923,97.375,99.707)
C6: (8.906,98.634,99.026)
C5: (8.031,99.760,99.081)
C4: (6.713,99.566,99.440)
P: (6.536,106.179,99.029)
C4': (4.056,103.351,100.226)
C2': (4.480,101.256,101.227)
O2': (3.148,100.868,101.510)
N1: (8.246,97.462,99.363)
N2: (6.479,96.148,99.997)
N3: (6.095,98.413,99.762)
N7: (8.280,101.102,98.835)
N9: (6.139,100.820,99.415)
O5': (5.864,104.822,99.542)
O3': (4.029,103.112,102.678)
OP1: (-1.068,89.462,99.325)
OP2: (-1.868,91.781,100.130)
C3': (3.059,91.667,101.423)
C1': (3.340,93.691,100.278)
C5': (1.730,90.596,99.547)
O4': (2.817,92.729,99.372)
C8: (0.917,94.283,100.764)
O2': (5.278,92.612,101.163)
C6: (0.931,97.636,101.822)
C5: (1.085,96.307,101.382)
C4: (2.366,95.892,101.075)
P: (-0.888,90.944,99.386)
C4': (2.939,91.399,99.939)
C2': (3.927,92.911,101.450)
C2: (3.214,97.862,101.579)
N1: (2.039,98.401,101.909)
N3: (3.488,96.630,101.154)
N6: (-0.244,98.176,102.154)
N7: (0.178,95.278,101.180)
N9: (2.251,94.580,100.683)
O5': (0.539,91.244,100.028)
O3': (3.652,90.583,102.095)
OP2: (-1.868,91.781,100.130)
C3': (3.059,91.667,101.423)
C1': (3.340,93.691,100.278)
C5': (1.730,90.596,99.547)
O4': (2.817,92.729,99.372)
C8: (0.917,94.283,100.764)
O2': (5.278,92.612,101.163)
C6: (0.931,97.636,101.822)
C5: (1.085,96.307,101.382)
C4: (2.366,95.892,101.075)
P: (-0.888,90.944,99.386)
C4': (2.939,91.399,99.939)
C2': (3.927,92.911,101.450)
C2: (3.214,97.862,101.579)
N1: (2.039,98.401,101.909)
N3: (3.488,96.630,101.154)
N6: (-0.244,98.176,102.154)
N7: (0.178,95.278,101.180)
N9: (2.251,94.580,100.683)
O5': (0.539,91.244,100.028)
O3': (3.652,90.583,102.095)
Image (generated by PyMOL):