Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01924:01954
Extra
PDB:
ATOM 1 O3' U A1923 100.140 121.333 111.685 1.00 43.55 O
ATOM 2 P A A1924 99.713 122.819 111.250 1.00 44.26 P
ATOM 3 OP1 A A1924 100.149 123.751 112.327 1.00 45.25 O
ATOM 4 OP2 A A1924 98.286 122.790 110.847 1.00 47.05 O
ATOM 5 O5' A A1924 100.577 123.093 109.943 1.00 42.06 O
ATOM 6 C5' A A1924 101.657 124.030 109.956 1.00 40.86 C
ATOM 7 C4' A A1924 102.249 124.160 108.575 1.00 43.00 C
ATOM 8 O4' A A1924 102.970 122.943 108.245 1.00 42.25 O
ATOM 9 C3' A A1924 101.263 124.401 107.425 1.00 44.07 C
ATOM 10 O3' A A1924 101.830 125.303 106.487 1.00 44.46 O
ATOM 11 C2' A A1924 101.181 123.035 106.759 1.00 43.28 C
ATOM 12 O2' A A1924 100.876 123.118 105.378 1.00 45.90 O
ATOM 13 C1' A A1924 102.612 122.545 106.945 1.00 41.75 C
ATOM 14 N9 A A1924 102.788 121.102 106.813 1.00 40.50 N
ATOM 15 C8 A A1924 101.877 120.101 107.034 1.00 39.60 C
ATOM 16 N7 A A1924 102.320 118.910 106.723 1.00 39.96 N
ATOM 17 C5 A A1924 103.616 119.138 106.289 1.00 38.94 C
ATOM 18 C6 A A1924 104.609 118.283 105.802 1.00 38.46 C
ATOM 19 N6 A A1924 104.440 116.971 105.640 1.00 40.13 N
ATOM 20 N1 A A1924 105.798 118.825 105.475 1.00 39.06 N
ATOM 21 C2 A A1924 105.963 120.144 105.621 1.00 39.84 C
ATOM 22 N3 A A1924 105.100 121.055 106.053 1.00 40.20 N
ATOM 23 C4 A A1924 103.929 120.479 106.372 1.00 40.19 C
ATOM 24 P G A1925 101.201 126.766 106.320 1.00 45.51 P
ATOM 25 OP1 G A1925 102.176 127.626 105.603 1.00 45.91 O
ATOM 26 OP2 G A1925 100.693 127.174 107.658 1.00 40.87 O
ATOM 27 O5' G A1925 99.965 126.550 105.353 1.00 44.76 O
TER
ATOM 1 O3' A B1953 102.877 111.897 102.975 1.00 54.58 O
ATOM 2 P U B1954 104.268 112.548 103.425 1.00 53.96 P
ATOM 3 OP1 U B1954 105.368 111.812 102.745 1.00 51.51 O
ATOM 4 OP2 U B1954 104.281 112.688 104.898 1.00 54.58 O
ATOM 5 O5' U B1954 104.146 114.021 102.847 1.00 52.93 O
ATOM 6 C5' U B1954 104.831 114.399 101.671 1.00 49.70 C
ATOM 7 C4' U B1954 105.366 115.789 101.828 1.00 49.38 C
ATOM 8 O4' U B1954 105.939 115.961 103.147 1.00 50.00 O
ATOM 9 C3' U B1954 106.498 116.073 100.873 1.00 48.91 C
ATOM 10 O3' U B1954 105.968 116.454 99.624 1.00 47.14 O
ATOM 11 C2' U B1954 107.273 117.161 101.594 1.00 50.35 C
ATOM 12 O2' U B1954 106.673 118.432 101.474 1.00 53.08 O
ATOM 13 C1' U B1954 107.146 116.697 103.049 1.00 51.42 C
ATOM 14 N1 U B1954 108.248 115.832 103.505 1.00 53.31 N
ATOM 15 C2 U B1954 109.535 116.350 103.498 1.00 53.95 C
ATOM 16 O2 U B1954 109.795 117.488 103.138 1.00 57.11 O
ATOM 17 N3 U B1954 110.507 115.488 103.934 1.00 53.81 N
ATOM 18 C4 U B1954 110.336 114.194 104.368 1.00 53.48 C
ATOM 19 O4 U B1954 111.318 113.537 104.709 1.00 54.84 O
ATOM 20 C5 U B1954 108.985 113.732 104.351 1.00 53.47 C
ATOM 21 C6 U B1954 108.013 114.542 103.930 1.00 52.94 C
ATOM 22 P G B1955 106.575 115.820 98.297 1.00 47.59 P
ATOM 23 OP1 G B1955 105.876 116.443 97.143 1.00 49.01 O
ATOM 24 OP2 G B1955 106.604 114.340 98.432 1.00 49.09 O
ATOM 25 O5' G B1955 108.070 116.352 98.324 1.00 49.45 O
TER
ATOM 2 P A A1924 99.713 122.819 111.250 1.00 44.26 P
ATOM 3 OP1 A A1924 100.149 123.751 112.327 1.00 45.25 O
ATOM 4 OP2 A A1924 98.286 122.790 110.847 1.00 47.05 O
ATOM 5 O5' A A1924 100.577 123.093 109.943 1.00 42.06 O
ATOM 6 C5' A A1924 101.657 124.030 109.956 1.00 40.86 C
ATOM 7 C4' A A1924 102.249 124.160 108.575 1.00 43.00 C
ATOM 8 O4' A A1924 102.970 122.943 108.245 1.00 42.25 O
ATOM 9 C3' A A1924 101.263 124.401 107.425 1.00 44.07 C
ATOM 10 O3' A A1924 101.830 125.303 106.487 1.00 44.46 O
ATOM 11 C2' A A1924 101.181 123.035 106.759 1.00 43.28 C
ATOM 12 O2' A A1924 100.876 123.118 105.378 1.00 45.90 O
ATOM 13 C1' A A1924 102.612 122.545 106.945 1.00 41.75 C
ATOM 14 N9 A A1924 102.788 121.102 106.813 1.00 40.50 N
ATOM 15 C8 A A1924 101.877 120.101 107.034 1.00 39.60 C
ATOM 16 N7 A A1924 102.320 118.910 106.723 1.00 39.96 N
ATOM 17 C5 A A1924 103.616 119.138 106.289 1.00 38.94 C
ATOM 18 C6 A A1924 104.609 118.283 105.802 1.00 38.46 C
ATOM 19 N6 A A1924 104.440 116.971 105.640 1.00 40.13 N
ATOM 20 N1 A A1924 105.798 118.825 105.475 1.00 39.06 N
ATOM 21 C2 A A1924 105.963 120.144 105.621 1.00 39.84 C
ATOM 22 N3 A A1924 105.100 121.055 106.053 1.00 40.20 N
ATOM 23 C4 A A1924 103.929 120.479 106.372 1.00 40.19 C
ATOM 24 P G A1925 101.201 126.766 106.320 1.00 45.51 P
ATOM 25 OP1 G A1925 102.176 127.626 105.603 1.00 45.91 O
ATOM 26 OP2 G A1925 100.693 127.174 107.658 1.00 40.87 O
ATOM 27 O5' G A1925 99.965 126.550 105.353 1.00 44.76 O
TER
ATOM 1 O3' A B1953 102.877 111.897 102.975 1.00 54.58 O
ATOM 2 P U B1954 104.268 112.548 103.425 1.00 53.96 P
ATOM 3 OP1 U B1954 105.368 111.812 102.745 1.00 51.51 O
ATOM 4 OP2 U B1954 104.281 112.688 104.898 1.00 54.58 O
ATOM 5 O5' U B1954 104.146 114.021 102.847 1.00 52.93 O
ATOM 6 C5' U B1954 104.831 114.399 101.671 1.00 49.70 C
ATOM 7 C4' U B1954 105.366 115.789 101.828 1.00 49.38 C
ATOM 8 O4' U B1954 105.939 115.961 103.147 1.00 50.00 O
ATOM 9 C3' U B1954 106.498 116.073 100.873 1.00 48.91 C
ATOM 10 O3' U B1954 105.968 116.454 99.624 1.00 47.14 O
ATOM 11 C2' U B1954 107.273 117.161 101.594 1.00 50.35 C
ATOM 12 O2' U B1954 106.673 118.432 101.474 1.00 53.08 O
ATOM 13 C1' U B1954 107.146 116.697 103.049 1.00 51.42 C
ATOM 14 N1 U B1954 108.248 115.832 103.505 1.00 53.31 N
ATOM 15 C2 U B1954 109.535 116.350 103.498 1.00 53.95 C
ATOM 16 O2 U B1954 109.795 117.488 103.138 1.00 57.11 O
ATOM 17 N3 U B1954 110.507 115.488 103.934 1.00 53.81 N
ATOM 18 C4 U B1954 110.336 114.194 104.368 1.00 53.48 C
ATOM 19 O4 U B1954 111.318 113.537 104.709 1.00 54.84 O
ATOM 20 C5 U B1954 108.985 113.732 104.351 1.00 53.47 C
ATOM 21 C6 U B1954 108.013 114.542 103.930 1.00 52.94 C
ATOM 22 P G B1955 106.575 115.820 98.297 1.00 47.59 P
ATOM 23 OP1 G B1955 105.876 116.443 97.143 1.00 49.01 O
ATOM 24 OP2 G B1955 106.604 114.340 98.432 1.00 49.09 O
ATOM 25 O5' G B1955 108.070 116.352 98.324 1.00 49.45 O
TER
Atoms:
OP1: (100.149,123.751,112.327)
OP2: (98.286,122.790,110.847)
C3': (101.263,124.401,107.425)
C1': (102.612,122.545,106.945)
C5': (101.657,124.030,109.956)
O4': (102.970,122.943,108.245)
C8: (101.877,120.101,107.034)
O2': (100.876,123.118,105.378)
C6: (104.609,118.283,105.802)
C5: (103.616,119.138,106.289)
C4: (103.929,120.479,106.372)
P: (99.713,122.819,111.250)
C4': (102.249,124.160,108.575)
C2': (101.181,123.035,106.759)
C2: (105.963,120.144,105.621)
N1: (105.798,118.825,105.475)
N3: (105.100,121.055,106.053)
N6: (104.440,116.971,105.640)
N7: (102.320,118.910,106.723)
N9: (102.788,121.102,106.813)
O5': (100.577,123.093,109.943)
O3': (101.830,125.303,106.487)
OP2: (98.286,122.790,110.847)
C3': (101.263,124.401,107.425)
C1': (102.612,122.545,106.945)
C5': (101.657,124.030,109.956)
O4': (102.970,122.943,108.245)
C8: (101.877,120.101,107.034)
O2': (100.876,123.118,105.378)
C6: (104.609,118.283,105.802)
C5: (103.616,119.138,106.289)
C4: (103.929,120.479,106.372)
P: (99.713,122.819,111.250)
C4': (102.249,124.160,108.575)
C2': (101.181,123.035,106.759)
C2: (105.963,120.144,105.621)
N1: (105.798,118.825,105.475)
N3: (105.100,121.055,106.053)
N6: (104.440,116.971,105.640)
N7: (102.320,118.910,106.723)
N9: (102.788,121.102,106.813)
O5': (100.577,123.093,109.943)
O3': (101.830,125.303,106.487)
C4: (110.336,114.194,104.368)
N3: (110.507,115.488,103.934)
OP1: (105.368,111.812,102.745)
OP2: (104.281,112.688,104.898)
C2: (109.535,116.350,103.498)
C1': (107.146,116.697,103.049)
C3': (106.498,116.073,100.873)
O5': (104.146,114.021,102.847)
O4': (105.939,115.961,103.147)
C5': (104.831,114.399,101.671)
P: (104.268,112.548,103.425)
C4': (105.366,115.789,101.828)
C2': (107.273,117.161,101.594)
O2': (106.673,118.432,101.474)
N1: (108.248,115.832,103.505)
O4: (111.318,113.537,104.709)
O2: (109.795,117.488,103.138)
C6: (108.013,114.542,103.930)
C5: (108.985,113.732,104.351)
O3': (105.968,116.454,99.624)
N3: (110.507,115.488,103.934)
OP1: (105.368,111.812,102.745)
OP2: (104.281,112.688,104.898)
C2: (109.535,116.350,103.498)
C1': (107.146,116.697,103.049)
C3': (106.498,116.073,100.873)
O5': (104.146,114.021,102.847)
O4': (105.939,115.961,103.147)
C5': (104.831,114.399,101.671)
P: (104.268,112.548,103.425)
C4': (105.366,115.789,101.828)
C2': (107.273,117.161,101.594)
O2': (106.673,118.432,101.474)
N1: (108.248,115.832,103.505)
O4: (111.318,113.537,104.709)
O2: (109.795,117.488,103.138)
C6: (108.013,114.542,103.930)
C5: (108.985,113.732,104.351)
O3': (105.968,116.454,99.624)
Image (generated by PyMOL):