ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A1005:A1041

Extra

PDB:
ATOM 1 O3' G A1004 52.488 96.341 94.554 1.00 35.98 O
ATOM 2 P G A1005 52.406 95.611 95.992 1.00 36.65 P
ATOM 3 OP1 G A1005 53.550 96.018 96.842 1.00 36.46 O
ATOM 4 OP2 G A1005 52.182 94.167 95.714 1.00 38.91 O
ATOM 5 O5' G A1005 51.105 96.226 96.668 1.00 34.40 O
ATOM 6 C5' G A1005 51.087 97.605 97.054 1.00 34.33 C
ATOM 7 C4' G A1005 49.753 98.005 97.660 1.00 34.94 C
ATOM 8 O4' G A1005 48.696 97.901 96.672 1.00 35.24 O
ATOM 9 C3' G A1005 49.213 97.228 98.856 1.00 34.43 C
ATOM 10 O3' G A1005 49.903 97.582 100.061 1.00 35.46 O
ATOM 11 C2' G A1005 47.745 97.655 98.816 1.00 34.30 C
ATOM 12 O2' G A1005 47.559 99.025 99.139 1.00 33.12 O
ATOM 13 C1' G A1005 47.472 97.554 97.315 1.00 34.79 C
ATOM 14 N9 G A1005 47.115 96.204 96.885 1.00 32.84 N
ATOM 15 C8 G A1005 47.926 95.320 96.216 1.00 33.09 C
ATOM 16 N7 G A1005 47.345 94.189 95.957 1.00 32.97 N
ATOM 17 C5 G A1005 46.073 94.326 96.492 1.00 33.51 C
ATOM 18 C6 G A1005 44.986 93.401 96.538 1.00 33.61 C
ATOM 19 O6 G A1005 44.938 92.242 96.094 1.00 36.18 O
ATOM 20 N1 G A1005 43.878 93.942 97.182 1.00 31.75 N
ATOM 21 C2 G A1005 43.813 95.206 97.710 1.00 32.63 C
ATOM 22 N2 G A1005 42.638 95.544 98.283 1.00 32.66 N
ATOM 23 N3 G A1005 44.820 96.076 97.678 1.00 32.74 N
ATOM 24 C4 G A1005 45.912 95.568 97.062 1.00 32.80 C
ATOM 25 P U A1006 50.021 96.527 101.289 1.00 35.26 P
ATOM 26 OP1 U A1006 50.824 97.214 102.336 1.00 32.56 O
ATOM 27 OP2 U A1006 50.436 95.174 100.835 1.00 36.04 O
ATOM 28 O5' U A1006 48.529 96.398 101.838 1.00 32.83 O
TER

ATOM 1 O3' A B1040 37.980 101.659 101.933 1.00 38.92 O
ATOM 2 P A B1041 37.806 101.367 103.502 1.00 38.06 P
ATOM 3 OP1 A B1041 36.402 101.715 103.797 1.00 38.02 O
ATOM 4 OP2 A B1041 38.890 101.966 104.300 1.00 36.50 O
ATOM 5 O5' A B1041 37.978 99.793 103.598 1.00 36.35 O
ATOM 6 C5' A B1041 37.175 98.922 102.797 1.00 34.31 C
ATOM 7 C4' A B1041 38.035 97.893 102.137 1.00 34.82 C
ATOM 8 O4' A B1041 38.956 98.543 101.238 1.00 35.87 O
ATOM 9 C3' A B1041 38.923 97.100 103.075 1.00 35.52 C
ATOM 10 O3' A B1041 38.169 96.013 103.576 1.00 37.52 O
ATOM 11 C2' A B1041 40.017 96.613 102.141 1.00 35.51 C
ATOM 12 O2' A B1041 39.589 95.491 101.407 1.00 35.57 O
ATOM 13 C1' A B1041 40.158 97.801 101.188 1.00 36.09 C
ATOM 14 N9 A B1041 41.253 98.687 101.546 1.00 36.95 N
ATOM 15 C8 A B1041 41.331 99.561 102.600 1.00 37.59 C
ATOM 16 N7 A B1041 42.478 100.175 102.692 1.00 37.91 N
ATOM 17 C5 A B1041 43.201 99.683 101.621 1.00 36.64 C
ATOM 18 C6 A B1041 44.498 99.929 101.187 1.00 34.72 C
ATOM 19 N6 A B1041 45.331 100.754 101.810 1.00 31.28 N
ATOM 20 N1 A B1041 44.920 99.290 100.079 1.00 35.65 N
ATOM 21 C2 A B1041 44.076 98.453 99.459 1.00 35.95 C
ATOM 22 N3 A B1041 42.830 98.130 99.779 1.00 35.62 N
ATOM 23 C4 A B1041 42.450 98.785 100.890 1.00 36.79 C
ATOM 24 P C B1042 38.833 94.959 104.581 1.00 38.59 P
ATOM 25 OP1 C B1042 40.293 94.966 104.398 1.00 40.42 O
ATOM 26 OP2 C B1042 38.101 93.683 104.475 1.00 38.07 O
ATOM 27 O5' C B1042 38.527 95.548 106.024 1.00 38.10 O
TER

Atoms:
OP1: (53.550,96.018,96.842)
OP2: (52.182,94.167,95.714)
C3': (49.213,97.228,98.856)
C1': (47.472,97.554,97.315)
C5': (51.087,97.605,97.054)
O6: (44.938,92.242,96.094)
O4': (48.696,97.901,96.672)
C8: (47.926,95.320,96.216)
C2: (43.813,95.206,97.710)
C6: (44.986,93.401,96.538)
C5: (46.073,94.326,96.492)
C4: (45.912,95.568,97.062)
P: (52.406,95.611,95.992)
C4': (49.753,98.005,97.660)
C2': (47.745,97.655,98.816)
O2': (47.559,99.025,99.139)
N1: (43.878,93.942,97.182)
N2: (42.638,95.544,98.283)
N3: (44.820,96.076,97.678)
N7: (47.345,94.189,95.957)
N9: (47.115,96.204,96.885)
O5': (51.105,96.226,96.668)
O3': (49.903,97.582,100.061)
OP1: (36.402,101.715,103.797)
OP2: (38.890,101.966,104.300)
C3': (38.923,97.100,103.075)
C1': (40.158,97.801,101.188)
C5': (37.175,98.922,102.797)
O4': (38.956,98.543,101.238)
C8: (41.331,99.561,102.600)
O2': (39.589,95.491,101.407)
C6: (44.498,99.929,101.187)
C5: (43.201,99.683,101.621)
C4: (42.450,98.785,100.890)
P: (37.806,101.367,103.502)
C4': (38.035,97.893,102.137)
C2': (40.017,96.613,102.141)
C2: (44.076,98.453,99.459)
N1: (44.920,99.290,100.079)
N3: (42.830,98.130,99.779)
N6: (45.331,100.754,101.810)
N7: (42.478,100.175,102.692)
N9: (41.253,98.687,101.546)
O5': (37.978,99.793,103.598)
O3': (38.169,96.013,103.576)
Image (generated by PyMOL):
PyMOL image
show in jmol