Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0262:0231
Extra
PDB:
ATOM 1 O3' G A 261 78.120 97.902 0.887 1.00 71.72 O
ATOM 2 P G A 262 78.497 98.071 -0.671 1.00 71.27 P
ATOM 3 OP1 G A 262 77.308 98.659 -1.333 1.00 71.04 O
ATOM 4 OP2 G A 262 79.051 96.780 -1.168 1.00 71.00 O
ATOM 5 O5' G A 262 79.668 99.155 -0.681 1.00 67.28 O
ATOM 6 C5' G A 262 79.397 100.528 -0.354 1.00 64.29 C
ATOM 7 C4' G A 262 80.684 101.283 -0.144 1.00 62.34 C
ATOM 8 O4' G A 262 81.471 100.599 0.866 1.00 61.78 O
ATOM 9 C3' G A 262 81.629 101.332 -1.330 1.00 62.69 C
ATOM 10 O3' G A 262 81.278 102.311 -2.290 1.00 63.41 O
ATOM 11 C2' G A 262 82.954 101.634 -0.657 1.00 61.55 C
ATOM 12 O2' G A 262 83.038 102.982 -0.235 1.00 60.13 O
ATOM 13 C1' G A 262 82.856 100.722 0.563 1.00 60.56 C
ATOM 14 N9 G A 262 83.392 99.388 0.291 1.00 58.58 N
ATOM 15 C8 G A 262 82.680 98.227 0.090 1.00 57.51 C
ATOM 16 N7 G A 262 83.443 97.189 -0.114 1.00 56.63 N
ATOM 17 C5 G A 262 84.736 97.693 -0.049 1.00 56.42 C
ATOM 18 C6 G A 262 85.992 97.037 -0.193 1.00 56.95 C
ATOM 19 O6 G A 262 86.221 95.839 -0.412 1.00 58.42 O
ATOM 20 N1 G A 262 87.049 97.926 -0.061 1.00 55.64 N
ATOM 21 C2 G A 262 86.923 99.268 0.171 1.00 55.55 C
ATOM 22 N2 G A 262 88.066 99.952 0.256 1.00 55.94 N
ATOM 23 N3 G A 262 85.765 99.893 0.309 1.00 55.00 N
ATOM 24 C4 G A 262 84.721 99.049 0.191 1.00 56.21 C
ATOM 25 P G A 263 81.711 102.094 -3.820 1.00 62.52 P
ATOM 26 OP1 G A 263 81.086 103.186 -4.611 1.00 61.10 O
ATOM 27 OP2 G A 263 81.457 100.674 -4.189 1.00 62.55 O
ATOM 28 O5' G A 263 83.286 102.286 -3.796 1.00 60.00 O
TER
ATOM 1 O3' A B 230 92.799 107.664 3.546 1.00 55.98 O
ATOM 2 P A B 231 92.998 108.012 1.985 1.00 56.64 P
ATOM 3 OP1 A B 231 94.447 108.307 1.818 1.00 55.25 O
ATOM 4 OP2 A B 231 91.980 109.020 1.546 1.00 53.48 O
ATOM 5 O5' A B 231 92.657 106.641 1.247 1.00 56.60 O
ATOM 6 C5' A B 231 93.342 105.420 1.587 1.00 57.01 C
ATOM 7 C4' A B 231 92.663 104.244 0.924 1.00 58.66 C
ATOM 8 O4' A B 231 91.320 104.093 1.452 1.00 58.71 O
ATOM 9 C3' A B 231 92.461 104.380 -0.575 1.00 60.11 C
ATOM 10 O3' A B 231 93.649 103.997 -1.262 1.00 62.70 O
ATOM 11 C2' A B 231 91.288 103.439 -0.838 1.00 59.12 C
ATOM 12 O2' A B 231 91.665 102.078 -0.938 1.00 59.04 O
ATOM 13 C1' A B 231 90.452 103.630 0.432 1.00 57.07 C
ATOM 14 N9 A B 231 89.342 104.575 0.302 1.00 54.96 N
ATOM 15 C8 A B 231 89.395 105.944 0.189 1.00 54.36 C
ATOM 16 N7 A B 231 88.218 106.511 0.065 1.00 53.66 N
ATOM 17 C5 A B 231 87.329 105.447 0.102 1.00 53.51 C
ATOM 18 C6 A B 231 85.922 105.381 0.005 1.00 53.94 C
ATOM 19 N6 A B 231 85.133 106.444 -0.182 1.00 51.61 N
ATOM 20 N1 A B 231 85.346 104.161 0.099 1.00 54.94 N
ATOM 21 C2 A B 231 86.137 103.087 0.259 1.00 55.01 C
ATOM 22 N3 A B 231 87.467 103.021 0.346 1.00 53.91 N
ATOM 23 C4 A B 231 88.008 104.249 0.261 1.00 53.93 C
ATOM 24 P C B 232 94.358 105.029 -2.264 1.00 64.16 P
ATOM 25 OP1 C B 232 95.549 104.335 -2.816 1.00 63.92 O
ATOM 26 OP2 C B 232 94.523 106.336 -1.586 1.00 63.99 O
ATOM 27 O5' C B 232 93.282 105.228 -3.416 1.00 63.21 O
TER
ATOM 2 P G A 262 78.497 98.071 -0.671 1.00 71.27 P
ATOM 3 OP1 G A 262 77.308 98.659 -1.333 1.00 71.04 O
ATOM 4 OP2 G A 262 79.051 96.780 -1.168 1.00 71.00 O
ATOM 5 O5' G A 262 79.668 99.155 -0.681 1.00 67.28 O
ATOM 6 C5' G A 262 79.397 100.528 -0.354 1.00 64.29 C
ATOM 7 C4' G A 262 80.684 101.283 -0.144 1.00 62.34 C
ATOM 8 O4' G A 262 81.471 100.599 0.866 1.00 61.78 O
ATOM 9 C3' G A 262 81.629 101.332 -1.330 1.00 62.69 C
ATOM 10 O3' G A 262 81.278 102.311 -2.290 1.00 63.41 O
ATOM 11 C2' G A 262 82.954 101.634 -0.657 1.00 61.55 C
ATOM 12 O2' G A 262 83.038 102.982 -0.235 1.00 60.13 O
ATOM 13 C1' G A 262 82.856 100.722 0.563 1.00 60.56 C
ATOM 14 N9 G A 262 83.392 99.388 0.291 1.00 58.58 N
ATOM 15 C8 G A 262 82.680 98.227 0.090 1.00 57.51 C
ATOM 16 N7 G A 262 83.443 97.189 -0.114 1.00 56.63 N
ATOM 17 C5 G A 262 84.736 97.693 -0.049 1.00 56.42 C
ATOM 18 C6 G A 262 85.992 97.037 -0.193 1.00 56.95 C
ATOM 19 O6 G A 262 86.221 95.839 -0.412 1.00 58.42 O
ATOM 20 N1 G A 262 87.049 97.926 -0.061 1.00 55.64 N
ATOM 21 C2 G A 262 86.923 99.268 0.171 1.00 55.55 C
ATOM 22 N2 G A 262 88.066 99.952 0.256 1.00 55.94 N
ATOM 23 N3 G A 262 85.765 99.893 0.309 1.00 55.00 N
ATOM 24 C4 G A 262 84.721 99.049 0.191 1.00 56.21 C
ATOM 25 P G A 263 81.711 102.094 -3.820 1.00 62.52 P
ATOM 26 OP1 G A 263 81.086 103.186 -4.611 1.00 61.10 O
ATOM 27 OP2 G A 263 81.457 100.674 -4.189 1.00 62.55 O
ATOM 28 O5' G A 263 83.286 102.286 -3.796 1.00 60.00 O
TER
ATOM 1 O3' A B 230 92.799 107.664 3.546 1.00 55.98 O
ATOM 2 P A B 231 92.998 108.012 1.985 1.00 56.64 P
ATOM 3 OP1 A B 231 94.447 108.307 1.818 1.00 55.25 O
ATOM 4 OP2 A B 231 91.980 109.020 1.546 1.00 53.48 O
ATOM 5 O5' A B 231 92.657 106.641 1.247 1.00 56.60 O
ATOM 6 C5' A B 231 93.342 105.420 1.587 1.00 57.01 C
ATOM 7 C4' A B 231 92.663 104.244 0.924 1.00 58.66 C
ATOM 8 O4' A B 231 91.320 104.093 1.452 1.00 58.71 O
ATOM 9 C3' A B 231 92.461 104.380 -0.575 1.00 60.11 C
ATOM 10 O3' A B 231 93.649 103.997 -1.262 1.00 62.70 O
ATOM 11 C2' A B 231 91.288 103.439 -0.838 1.00 59.12 C
ATOM 12 O2' A B 231 91.665 102.078 -0.938 1.00 59.04 O
ATOM 13 C1' A B 231 90.452 103.630 0.432 1.00 57.07 C
ATOM 14 N9 A B 231 89.342 104.575 0.302 1.00 54.96 N
ATOM 15 C8 A B 231 89.395 105.944 0.189 1.00 54.36 C
ATOM 16 N7 A B 231 88.218 106.511 0.065 1.00 53.66 N
ATOM 17 C5 A B 231 87.329 105.447 0.102 1.00 53.51 C
ATOM 18 C6 A B 231 85.922 105.381 0.005 1.00 53.94 C
ATOM 19 N6 A B 231 85.133 106.444 -0.182 1.00 51.61 N
ATOM 20 N1 A B 231 85.346 104.161 0.099 1.00 54.94 N
ATOM 21 C2 A B 231 86.137 103.087 0.259 1.00 55.01 C
ATOM 22 N3 A B 231 87.467 103.021 0.346 1.00 53.91 N
ATOM 23 C4 A B 231 88.008 104.249 0.261 1.00 53.93 C
ATOM 24 P C B 232 94.358 105.029 -2.264 1.00 64.16 P
ATOM 25 OP1 C B 232 95.549 104.335 -2.816 1.00 63.92 O
ATOM 26 OP2 C B 232 94.523 106.336 -1.586 1.00 63.99 O
ATOM 27 O5' C B 232 93.282 105.228 -3.416 1.00 63.21 O
TER
Atoms:
OP1: (77.308,98.659,-1.333)
OP2: (79.051,96.780,-1.168)
C3': (81.629,101.332,-1.330)
C1': (82.856,100.722,0.563)
C5': (79.397,100.528,-0.354)
O6: (86.221,95.839,-0.412)
O4': (81.471,100.599,0.866)
C8: (82.680,98.227,0.090)
C2: (86.923,99.268,0.171)
C6: (85.992,97.037,-0.193)
C5: (84.736,97.693,-0.049)
C4: (84.721,99.049,0.191)
P: (78.497,98.071,-0.671)
C4': (80.684,101.283,-0.144)
C2': (82.954,101.634,-0.657)
O2': (83.038,102.982,-0.235)
N1: (87.049,97.926,-0.061)
N2: (88.066,99.952,0.256)
N3: (85.765,99.893,0.309)
N7: (83.443,97.189,-0.114)
N9: (83.392,99.388,0.291)
O5': (79.668,99.155,-0.681)
O3': (81.278,102.311,-2.290)
OP2: (79.051,96.780,-1.168)
C3': (81.629,101.332,-1.330)
C1': (82.856,100.722,0.563)
C5': (79.397,100.528,-0.354)
O6: (86.221,95.839,-0.412)
O4': (81.471,100.599,0.866)
C8: (82.680,98.227,0.090)
C2: (86.923,99.268,0.171)
C6: (85.992,97.037,-0.193)
C5: (84.736,97.693,-0.049)
C4: (84.721,99.049,0.191)
P: (78.497,98.071,-0.671)
C4': (80.684,101.283,-0.144)
C2': (82.954,101.634,-0.657)
O2': (83.038,102.982,-0.235)
N1: (87.049,97.926,-0.061)
N2: (88.066,99.952,0.256)
N3: (85.765,99.893,0.309)
N7: (83.443,97.189,-0.114)
N9: (83.392,99.388,0.291)
O5': (79.668,99.155,-0.681)
O3': (81.278,102.311,-2.290)
OP1: (94.447,108.307,1.818)
OP2: (91.980,109.020,1.546)
C3': (92.461,104.380,-0.575)
C1': (90.452,103.630,0.432)
C5': (93.342,105.420,1.587)
O4': (91.320,104.093,1.452)
C8: (89.395,105.944,0.189)
O2': (91.665,102.078,-0.938)
C6: (85.922,105.381,0.005)
C5: (87.329,105.447,0.102)
C4: (88.008,104.249,0.261)
P: (92.998,108.012,1.985)
C4': (92.663,104.244,0.924)
C2': (91.288,103.439,-0.838)
C2: (86.137,103.087,0.259)
N1: (85.346,104.161,0.099)
N3: (87.467,103.021,0.346)
N6: (85.133,106.444,-0.182)
N7: (88.218,106.511,0.065)
N9: (89.342,104.575,0.302)
O5': (92.657,106.641,1.247)
O3': (93.649,103.997,-1.262)
OP2: (91.980,109.020,1.546)
C3': (92.461,104.380,-0.575)
C1': (90.452,103.630,0.432)
C5': (93.342,105.420,1.587)
O4': (91.320,104.093,1.452)
C8: (89.395,105.944,0.189)
O2': (91.665,102.078,-0.938)
C6: (85.922,105.381,0.005)
C5: (87.329,105.447,0.102)
C4: (88.008,104.249,0.261)
P: (92.998,108.012,1.985)
C4': (92.663,104.244,0.924)
C2': (91.288,103.439,-0.838)
C2: (86.137,103.087,0.259)
N1: (85.346,104.161,0.099)
N3: (87.467,103.021,0.346)
N6: (85.133,106.444,-0.182)
N7: (88.218,106.511,0.065)
N9: (89.342,104.575,0.302)
O5': (92.657,106.641,1.247)
O3': (93.649,103.997,-1.262)
Image (generated by PyMOL):