Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01052:0554
Extra
PDB:
ATOM 1 O3' A A1051 6.251 106.485 97.954 1.00 53.25 O
ATOM 2 P G A1052 6.726 106.321 99.472 1.00 53.02 P
ATOM 3 OP1 G A1052 6.131 107.450 100.223 1.00 54.07 O
ATOM 4 OP2 G A1052 8.195 106.117 99.491 1.00 52.33 O
ATOM 5 O5' G A1052 6.017 104.978 99.958 1.00 53.42 O
ATOM 6 C5' G A1052 4.605 104.946 100.219 1.00 50.86 C
ATOM 7 C4' G A1052 4.163 103.547 100.556 1.00 50.45 C
ATOM 8 O4' G A1052 4.604 102.662 99.500 1.00 50.12 O
ATOM 9 C3' G A1052 4.745 102.902 101.800 1.00 51.01 C
ATOM 10 O3' G A1052 4.089 103.284 102.996 1.00 52.23 O
ATOM 11 C2' G A1052 4.496 101.433 101.517 1.00 52.70 C
ATOM 12 O2' G A1052 3.130 101.098 101.690 1.00 53.18 O
ATOM 13 C1' G A1052 4.842 101.367 100.033 1.00 51.82 C
ATOM 14 N9 G A1052 6.236 101.007 99.781 1.00 51.97 N
ATOM 15 C8 G A1052 7.263 101.858 99.450 1.00 54.89 C
ATOM 16 N7 G A1052 8.398 101.243 99.252 1.00 55.12 N
ATOM 17 C5 G A1052 8.106 99.905 99.471 1.00 53.50 C
ATOM 18 C6 G A1052 8.941 98.758 99.396 1.00 54.34 C
ATOM 19 O6 G A1052 10.140 98.694 99.099 1.00 54.07 O
ATOM 20 N1 G A1052 8.243 97.598 99.707 1.00 53.65 N
ATOM 21 C2 G A1052 6.916 97.542 100.039 1.00 52.49 C
ATOM 22 N2 G A1052 6.437 96.323 100.308 1.00 51.43 N
ATOM 23 N3 G A1052 6.122 98.601 100.104 1.00 51.26 N
ATOM 24 C4 G A1052 6.778 99.741 99.810 1.00 51.58 C
ATOM 25 P G A1053 4.894 103.235 104.388 1.00 54.25 P
ATOM 26 OP1 G A1053 3.936 103.528 105.478 1.00 53.99 O
ATOM 27 OP2 G A1053 6.096 104.092 104.232 1.00 56.83 O
ATOM 28 O5' G A1053 5.391 101.719 104.512 1.00 52.40 O
TER
ATOM 1 O3' A B 553 -0.631 91.525 98.176 1.00 62.09 O
ATOM 2 P A B 554 -0.681 90.985 99.690 1.00 62.94 P
ATOM 3 OP1 A B 554 -0.742 89.494 99.610 1.00 60.35 O
ATOM 4 OP2 A B 554 -1.737 91.732 100.432 1.00 62.02 O
ATOM 5 O5' A B 554 0.728 91.415 100.306 1.00 61.60 O
ATOM 6 C5' A B 554 1.961 90.857 99.805 1.00 57.41 C
ATOM 7 C4' A B 554 3.131 91.686 100.262 1.00 54.42 C
ATOM 8 O4' A B 554 3.000 93.035 99.744 1.00 55.26 O
ATOM 9 C3' A B 554 3.221 91.886 101.758 1.00 53.68 C
ATOM 10 O3' A B 554 3.819 90.768 102.390 1.00 52.16 O
ATOM 11 C2' A B 554 4.058 93.153 101.857 1.00 53.36 C
ATOM 12 O2' A B 554 5.427 92.916 101.614 1.00 52.91 O
ATOM 13 C1' A B 554 3.497 93.968 100.691 1.00 53.25 C
ATOM 14 N9 A B 554 2.396 94.847 101.082 1.00 52.57 N
ATOM 15 C8 A B 554 1.069 94.519 101.149 1.00 53.92 C
ATOM 16 N7 A B 554 0.300 95.503 101.546 1.00 54.96 N
ATOM 17 C5 A B 554 1.180 96.554 101.752 1.00 54.12 C
ATOM 18 C6 A B 554 0.986 97.883 102.183 1.00 54.13 C
ATOM 19 N6 A B 554 -0.208 98.395 102.486 1.00 51.70 N
ATOM 20 N1 A B 554 2.075 98.677 102.290 1.00 54.12 N
ATOM 21 C2 A B 554 3.269 98.164 101.976 1.00 54.03 C
ATOM 22 N3 A B 554 3.577 96.934 101.553 1.00 55.71 N
ATOM 23 C4 A B 554 2.476 96.167 101.464 1.00 53.73 C
ATOM 24 P U B 555 3.220 90.233 103.779 1.00 52.64 P
ATOM 25 OP1 U B 555 4.164 89.225 104.313 1.00 51.77 O
ATOM 26 OP2 U B 555 1.801 89.855 103.542 1.00 52.14 O
ATOM 27 O5' U B 555 3.262 91.505 104.740 1.00 49.20 O
TER
ATOM 2 P G A1052 6.726 106.321 99.472 1.00 53.02 P
ATOM 3 OP1 G A1052 6.131 107.450 100.223 1.00 54.07 O
ATOM 4 OP2 G A1052 8.195 106.117 99.491 1.00 52.33 O
ATOM 5 O5' G A1052 6.017 104.978 99.958 1.00 53.42 O
ATOM 6 C5' G A1052 4.605 104.946 100.219 1.00 50.86 C
ATOM 7 C4' G A1052 4.163 103.547 100.556 1.00 50.45 C
ATOM 8 O4' G A1052 4.604 102.662 99.500 1.00 50.12 O
ATOM 9 C3' G A1052 4.745 102.902 101.800 1.00 51.01 C
ATOM 10 O3' G A1052 4.089 103.284 102.996 1.00 52.23 O
ATOM 11 C2' G A1052 4.496 101.433 101.517 1.00 52.70 C
ATOM 12 O2' G A1052 3.130 101.098 101.690 1.00 53.18 O
ATOM 13 C1' G A1052 4.842 101.367 100.033 1.00 51.82 C
ATOM 14 N9 G A1052 6.236 101.007 99.781 1.00 51.97 N
ATOM 15 C8 G A1052 7.263 101.858 99.450 1.00 54.89 C
ATOM 16 N7 G A1052 8.398 101.243 99.252 1.00 55.12 N
ATOM 17 C5 G A1052 8.106 99.905 99.471 1.00 53.50 C
ATOM 18 C6 G A1052 8.941 98.758 99.396 1.00 54.34 C
ATOM 19 O6 G A1052 10.140 98.694 99.099 1.00 54.07 O
ATOM 20 N1 G A1052 8.243 97.598 99.707 1.00 53.65 N
ATOM 21 C2 G A1052 6.916 97.542 100.039 1.00 52.49 C
ATOM 22 N2 G A1052 6.437 96.323 100.308 1.00 51.43 N
ATOM 23 N3 G A1052 6.122 98.601 100.104 1.00 51.26 N
ATOM 24 C4 G A1052 6.778 99.741 99.810 1.00 51.58 C
ATOM 25 P G A1053 4.894 103.235 104.388 1.00 54.25 P
ATOM 26 OP1 G A1053 3.936 103.528 105.478 1.00 53.99 O
ATOM 27 OP2 G A1053 6.096 104.092 104.232 1.00 56.83 O
ATOM 28 O5' G A1053 5.391 101.719 104.512 1.00 52.40 O
TER
ATOM 1 O3' A B 553 -0.631 91.525 98.176 1.00 62.09 O
ATOM 2 P A B 554 -0.681 90.985 99.690 1.00 62.94 P
ATOM 3 OP1 A B 554 -0.742 89.494 99.610 1.00 60.35 O
ATOM 4 OP2 A B 554 -1.737 91.732 100.432 1.00 62.02 O
ATOM 5 O5' A B 554 0.728 91.415 100.306 1.00 61.60 O
ATOM 6 C5' A B 554 1.961 90.857 99.805 1.00 57.41 C
ATOM 7 C4' A B 554 3.131 91.686 100.262 1.00 54.42 C
ATOM 8 O4' A B 554 3.000 93.035 99.744 1.00 55.26 O
ATOM 9 C3' A B 554 3.221 91.886 101.758 1.00 53.68 C
ATOM 10 O3' A B 554 3.819 90.768 102.390 1.00 52.16 O
ATOM 11 C2' A B 554 4.058 93.153 101.857 1.00 53.36 C
ATOM 12 O2' A B 554 5.427 92.916 101.614 1.00 52.91 O
ATOM 13 C1' A B 554 3.497 93.968 100.691 1.00 53.25 C
ATOM 14 N9 A B 554 2.396 94.847 101.082 1.00 52.57 N
ATOM 15 C8 A B 554 1.069 94.519 101.149 1.00 53.92 C
ATOM 16 N7 A B 554 0.300 95.503 101.546 1.00 54.96 N
ATOM 17 C5 A B 554 1.180 96.554 101.752 1.00 54.12 C
ATOM 18 C6 A B 554 0.986 97.883 102.183 1.00 54.13 C
ATOM 19 N6 A B 554 -0.208 98.395 102.486 1.00 51.70 N
ATOM 20 N1 A B 554 2.075 98.677 102.290 1.00 54.12 N
ATOM 21 C2 A B 554 3.269 98.164 101.976 1.00 54.03 C
ATOM 22 N3 A B 554 3.577 96.934 101.553 1.00 55.71 N
ATOM 23 C4 A B 554 2.476 96.167 101.464 1.00 53.73 C
ATOM 24 P U B 555 3.220 90.233 103.779 1.00 52.64 P
ATOM 25 OP1 U B 555 4.164 89.225 104.313 1.00 51.77 O
ATOM 26 OP2 U B 555 1.801 89.855 103.542 1.00 52.14 O
ATOM 27 O5' U B 555 3.262 91.505 104.740 1.00 49.20 O
TER
Atoms:
OP1: (6.131,107.450,100.223)
OP2: (8.195,106.117,99.491)
C3': (4.745,102.902,101.800)
C1': (4.842,101.367,100.033)
C5': (4.605,104.946,100.219)
O6: (10.140,98.694,99.099)
O4': (4.604,102.662,99.500)
C8: (7.263,101.858,99.450)
C2: (6.916,97.542,100.039)
C6: (8.941,98.758,99.396)
C5: (8.106,99.905,99.471)
C4: (6.778,99.741,99.810)
P: (6.726,106.321,99.472)
C4': (4.163,103.547,100.556)
C2': (4.496,101.433,101.517)
O2': (3.130,101.098,101.690)
N1: (8.243,97.598,99.707)
N2: (6.437,96.323,100.308)
N3: (6.122,98.601,100.104)
N7: (8.398,101.243,99.252)
N9: (6.236,101.007,99.781)
O5': (6.017,104.978,99.958)
O3': (4.089,103.284,102.996)
OP2: (8.195,106.117,99.491)
C3': (4.745,102.902,101.800)
C1': (4.842,101.367,100.033)
C5': (4.605,104.946,100.219)
O6: (10.140,98.694,99.099)
O4': (4.604,102.662,99.500)
C8: (7.263,101.858,99.450)
C2: (6.916,97.542,100.039)
C6: (8.941,98.758,99.396)
C5: (8.106,99.905,99.471)
C4: (6.778,99.741,99.810)
P: (6.726,106.321,99.472)
C4': (4.163,103.547,100.556)
C2': (4.496,101.433,101.517)
O2': (3.130,101.098,101.690)
N1: (8.243,97.598,99.707)
N2: (6.437,96.323,100.308)
N3: (6.122,98.601,100.104)
N7: (8.398,101.243,99.252)
N9: (6.236,101.007,99.781)
O5': (6.017,104.978,99.958)
O3': (4.089,103.284,102.996)
OP1: (-0.742,89.494,99.610)
OP2: (-1.737,91.732,100.432)
C3': (3.221,91.886,101.758)
C1': (3.497,93.968,100.691)
C5': (1.961,90.857,99.805)
O4': (3.000,93.035,99.744)
C8: (1.069,94.519,101.149)
O2': (5.427,92.916,101.614)
C6: (0.986,97.883,102.183)
C5: (1.180,96.554,101.752)
C4: (2.476,96.167,101.464)
P: (-0.681,90.985,99.690)
C4': (3.131,91.686,100.262)
C2': (4.058,93.153,101.857)
C2: (3.269,98.164,101.976)
N1: (2.075,98.677,102.290)
N3: (3.577,96.934,101.553)
N6: (-0.208,98.395,102.486)
N7: (0.300,95.503,101.546)
N9: (2.396,94.847,101.082)
O5': (0.728,91.415,100.306)
O3': (3.819,90.768,102.390)
OP2: (-1.737,91.732,100.432)
C3': (3.221,91.886,101.758)
C1': (3.497,93.968,100.691)
C5': (1.961,90.857,99.805)
O4': (3.000,93.035,99.744)
C8: (1.069,94.519,101.149)
O2': (5.427,92.916,101.614)
C6: (0.986,97.883,102.183)
C5: (1.180,96.554,101.752)
C4: (2.476,96.167,101.464)
P: (-0.681,90.985,99.690)
C4': (3.131,91.686,100.262)
C2': (4.058,93.153,101.857)
C2: (3.269,98.164,101.976)
N1: (2.075,98.677,102.290)
N3: (3.577,96.934,101.553)
N6: (-0.208,98.395,102.486)
N7: (0.300,95.503,101.546)
N9: (2.396,94.847,101.082)
O5': (0.728,91.415,100.306)
O3': (3.819,90.768,102.390)
Image (generated by PyMOL):