Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A262:A231
Extra
PDB:
ATOM 1 O3' G A 261 78.131 97.947 1.287 1.00 76.19 O
ATOM 2 P G A 262 78.549 98.090 -0.254 1.00 75.12 P
ATOM 3 OP1 G A 262 77.361 98.720 -0.899 1.00 75.69 O
ATOM 4 OP2 G A 262 79.046 96.762 -0.746 1.00 74.50 O
ATOM 5 O5' G A 262 79.771 99.127 -0.236 1.00 72.17 O
ATOM 6 C5' G A 262 79.532 100.536 -0.027 1.00 68.05 C
ATOM 7 C4' G A 262 80.825 101.277 0.204 1.00 66.96 C
ATOM 8 O4' G A 262 81.580 100.616 1.251 1.00 66.75 O
ATOM 9 C3' G A 262 81.807 101.344 -0.951 1.00 66.76 C
ATOM 10 O3' G A 262 81.478 102.373 -1.875 1.00 66.86 O
ATOM 11 C2' G A 262 83.129 101.623 -0.242 1.00 66.21 C
ATOM 12 O2' G A 262 83.300 102.968 0.149 1.00 64.64 O
ATOM 13 C1' G A 262 82.976 100.764 1.011 1.00 65.95 C
ATOM 14 N9 G A 262 83.564 99.443 0.824 1.00 65.71 N
ATOM 15 C8 G A 262 82.909 98.238 0.724 1.00 65.19 C
ATOM 16 N7 G A 262 83.713 97.236 0.492 1.00 64.64 N
ATOM 17 C5 G A 262 84.973 97.813 0.439 1.00 65.84 C
ATOM 18 C6 G A 262 86.234 97.229 0.179 1.00 66.43 C
ATOM 19 O6 G A 262 86.492 96.056 -0.109 1.00 67.66 O
ATOM 20 N1 G A 262 87.258 98.167 0.258 1.00 66.41 N
ATOM 21 C2 G A 262 87.085 99.505 0.528 1.00 66.86 C
ATOM 22 N2 G A 262 88.201 100.246 0.604 1.00 66.96 N
ATOM 23 N3 G A 262 85.904 100.072 0.723 1.00 66.42 N
ATOM 24 C4 G A 262 84.901 99.171 0.672 1.00 65.96 C
ATOM 25 P G A 263 81.828 102.179 -3.426 1.00 65.94 P
ATOM 26 OP1 G A 263 81.136 103.263 -4.180 1.00 63.56 O
ATOM 27 OP2 G A 263 81.547 100.756 -3.744 1.00 66.21 O
ATOM 28 O5' G A 263 83.400 102.386 -3.485 1.00 65.77 O
TER
ATOM 1 O3' A B 230 92.914 107.647 3.903 1.00 59.66 O
ATOM 2 P A B 231 93.147 108.017 2.359 1.00 62.22 P
ATOM 3 OP1 A B 231 94.597 108.369 2.263 1.00 60.81 O
ATOM 4 OP2 A B 231 92.115 108.990 1.869 1.00 60.70 O
ATOM 5 O5' A B 231 92.879 106.638 1.609 1.00 61.36 O
ATOM 6 C5' A B 231 93.636 105.455 1.918 1.00 63.34 C
ATOM 7 C4' A B 231 92.912 104.256 1.377 1.00 64.88 C
ATOM 8 O4' A B 231 91.574 104.227 1.939 1.00 65.22 O
ATOM 9 C3' A B 231 92.654 104.340 -0.119 1.00 66.25 C
ATOM 10 O3' A B 231 93.830 103.981 -0.842 1.00 67.09 O
ATOM 11 C2' A B 231 91.455 103.406 -0.299 1.00 66.06 C
ATOM 12 O2' A B 231 91.754 102.019 -0.303 1.00 66.16 O
ATOM 13 C1' A B 231 90.666 103.710 0.975 1.00 64.08 C
ATOM 14 N9 A B 231 89.578 104.667 0.777 1.00 61.75 N
ATOM 15 C8 A B 231 89.627 106.021 0.577 1.00 60.65 C
ATOM 16 N7 A B 231 88.447 106.567 0.392 1.00 60.49 N
ATOM 17 C5 A B 231 87.564 105.501 0.490 1.00 59.84 C
ATOM 18 C6 A B 231 86.162 105.413 0.383 1.00 59.28 C
ATOM 19 N6 A B 231 85.365 106.454 0.119 1.00 57.87 N
ATOM 20 N1 A B 231 85.598 104.201 0.547 1.00 58.80 N
ATOM 21 C2 A B 231 86.392 103.153 0.783 1.00 59.43 C
ATOM 22 N3 A B 231 87.716 103.105 0.893 1.00 60.46 N
ATOM 23 C4 A B 231 88.247 104.328 0.737 1.00 60.82 C
ATOM 24 P C B 232 94.505 105.038 -1.848 1.00 67.40 P
ATOM 25 OP1 C B 232 95.726 104.354 -2.337 1.00 67.92 O
ATOM 26 OP2 C B 232 94.614 106.415 -1.294 1.00 66.95 O
ATOM 27 O5' C B 232 93.456 105.143 -3.031 1.00 66.32 O
TER
ATOM 2 P G A 262 78.549 98.090 -0.254 1.00 75.12 P
ATOM 3 OP1 G A 262 77.361 98.720 -0.899 1.00 75.69 O
ATOM 4 OP2 G A 262 79.046 96.762 -0.746 1.00 74.50 O
ATOM 5 O5' G A 262 79.771 99.127 -0.236 1.00 72.17 O
ATOM 6 C5' G A 262 79.532 100.536 -0.027 1.00 68.05 C
ATOM 7 C4' G A 262 80.825 101.277 0.204 1.00 66.96 C
ATOM 8 O4' G A 262 81.580 100.616 1.251 1.00 66.75 O
ATOM 9 C3' G A 262 81.807 101.344 -0.951 1.00 66.76 C
ATOM 10 O3' G A 262 81.478 102.373 -1.875 1.00 66.86 O
ATOM 11 C2' G A 262 83.129 101.623 -0.242 1.00 66.21 C
ATOM 12 O2' G A 262 83.300 102.968 0.149 1.00 64.64 O
ATOM 13 C1' G A 262 82.976 100.764 1.011 1.00 65.95 C
ATOM 14 N9 G A 262 83.564 99.443 0.824 1.00 65.71 N
ATOM 15 C8 G A 262 82.909 98.238 0.724 1.00 65.19 C
ATOM 16 N7 G A 262 83.713 97.236 0.492 1.00 64.64 N
ATOM 17 C5 G A 262 84.973 97.813 0.439 1.00 65.84 C
ATOM 18 C6 G A 262 86.234 97.229 0.179 1.00 66.43 C
ATOM 19 O6 G A 262 86.492 96.056 -0.109 1.00 67.66 O
ATOM 20 N1 G A 262 87.258 98.167 0.258 1.00 66.41 N
ATOM 21 C2 G A 262 87.085 99.505 0.528 1.00 66.86 C
ATOM 22 N2 G A 262 88.201 100.246 0.604 1.00 66.96 N
ATOM 23 N3 G A 262 85.904 100.072 0.723 1.00 66.42 N
ATOM 24 C4 G A 262 84.901 99.171 0.672 1.00 65.96 C
ATOM 25 P G A 263 81.828 102.179 -3.426 1.00 65.94 P
ATOM 26 OP1 G A 263 81.136 103.263 -4.180 1.00 63.56 O
ATOM 27 OP2 G A 263 81.547 100.756 -3.744 1.00 66.21 O
ATOM 28 O5' G A 263 83.400 102.386 -3.485 1.00 65.77 O
TER
ATOM 1 O3' A B 230 92.914 107.647 3.903 1.00 59.66 O
ATOM 2 P A B 231 93.147 108.017 2.359 1.00 62.22 P
ATOM 3 OP1 A B 231 94.597 108.369 2.263 1.00 60.81 O
ATOM 4 OP2 A B 231 92.115 108.990 1.869 1.00 60.70 O
ATOM 5 O5' A B 231 92.879 106.638 1.609 1.00 61.36 O
ATOM 6 C5' A B 231 93.636 105.455 1.918 1.00 63.34 C
ATOM 7 C4' A B 231 92.912 104.256 1.377 1.00 64.88 C
ATOM 8 O4' A B 231 91.574 104.227 1.939 1.00 65.22 O
ATOM 9 C3' A B 231 92.654 104.340 -0.119 1.00 66.25 C
ATOM 10 O3' A B 231 93.830 103.981 -0.842 1.00 67.09 O
ATOM 11 C2' A B 231 91.455 103.406 -0.299 1.00 66.06 C
ATOM 12 O2' A B 231 91.754 102.019 -0.303 1.00 66.16 O
ATOM 13 C1' A B 231 90.666 103.710 0.975 1.00 64.08 C
ATOM 14 N9 A B 231 89.578 104.667 0.777 1.00 61.75 N
ATOM 15 C8 A B 231 89.627 106.021 0.577 1.00 60.65 C
ATOM 16 N7 A B 231 88.447 106.567 0.392 1.00 60.49 N
ATOM 17 C5 A B 231 87.564 105.501 0.490 1.00 59.84 C
ATOM 18 C6 A B 231 86.162 105.413 0.383 1.00 59.28 C
ATOM 19 N6 A B 231 85.365 106.454 0.119 1.00 57.87 N
ATOM 20 N1 A B 231 85.598 104.201 0.547 1.00 58.80 N
ATOM 21 C2 A B 231 86.392 103.153 0.783 1.00 59.43 C
ATOM 22 N3 A B 231 87.716 103.105 0.893 1.00 60.46 N
ATOM 23 C4 A B 231 88.247 104.328 0.737 1.00 60.82 C
ATOM 24 P C B 232 94.505 105.038 -1.848 1.00 67.40 P
ATOM 25 OP1 C B 232 95.726 104.354 -2.337 1.00 67.92 O
ATOM 26 OP2 C B 232 94.614 106.415 -1.294 1.00 66.95 O
ATOM 27 O5' C B 232 93.456 105.143 -3.031 1.00 66.32 O
TER
Atoms:
OP1: (77.361,98.720,-0.899)
OP2: (79.046,96.762,-0.746)
C3': (81.807,101.344,-0.951)
C1': (82.976,100.764,1.011)
C5': (79.532,100.536,-0.027)
O6: (86.492,96.056,-0.109)
O4': (81.580,100.616,1.251)
C8: (82.909,98.238,0.724)
C2: (87.085,99.505,0.528)
C6: (86.234,97.229,0.179)
C5: (84.973,97.813,0.439)
C4: (84.901,99.171,0.672)
P: (78.549,98.090,-0.254)
C4': (80.825,101.277,0.204)
C2': (83.129,101.623,-0.242)
O2': (83.300,102.968,0.149)
N1: (87.258,98.167,0.258)
N2: (88.201,100.246,0.604)
N3: (85.904,100.072,0.723)
N7: (83.713,97.236,0.492)
N9: (83.564,99.443,0.824)
O5': (79.771,99.127,-0.236)
O3': (81.478,102.373,-1.875)
OP2: (79.046,96.762,-0.746)
C3': (81.807,101.344,-0.951)
C1': (82.976,100.764,1.011)
C5': (79.532,100.536,-0.027)
O6: (86.492,96.056,-0.109)
O4': (81.580,100.616,1.251)
C8: (82.909,98.238,0.724)
C2: (87.085,99.505,0.528)
C6: (86.234,97.229,0.179)
C5: (84.973,97.813,0.439)
C4: (84.901,99.171,0.672)
P: (78.549,98.090,-0.254)
C4': (80.825,101.277,0.204)
C2': (83.129,101.623,-0.242)
O2': (83.300,102.968,0.149)
N1: (87.258,98.167,0.258)
N2: (88.201,100.246,0.604)
N3: (85.904,100.072,0.723)
N7: (83.713,97.236,0.492)
N9: (83.564,99.443,0.824)
O5': (79.771,99.127,-0.236)
O3': (81.478,102.373,-1.875)
OP1: (94.597,108.369,2.263)
OP2: (92.115,108.990,1.869)
C3': (92.654,104.340,-0.119)
C1': (90.666,103.710,0.975)
C5': (93.636,105.455,1.918)
O4': (91.574,104.227,1.939)
C8: (89.627,106.021,0.577)
O2': (91.754,102.019,-0.303)
C6: (86.162,105.413,0.383)
C5: (87.564,105.501,0.490)
C4: (88.247,104.328,0.737)
P: (93.147,108.017,2.359)
C4': (92.912,104.256,1.377)
C2': (91.455,103.406,-0.299)
C2: (86.392,103.153,0.783)
N1: (85.598,104.201,0.547)
N3: (87.716,103.105,0.893)
N6: (85.365,106.454,0.119)
N7: (88.447,106.567,0.392)
N9: (89.578,104.667,0.777)
O5': (92.879,106.638,1.609)
O3': (93.830,103.981,-0.842)
OP2: (92.115,108.990,1.869)
C3': (92.654,104.340,-0.119)
C1': (90.666,103.710,0.975)
C5': (93.636,105.455,1.918)
O4': (91.574,104.227,1.939)
C8: (89.627,106.021,0.577)
O2': (91.754,102.019,-0.303)
C6: (86.162,105.413,0.383)
C5: (87.564,105.501,0.490)
C4: (88.247,104.328,0.737)
P: (93.147,108.017,2.359)
C4': (92.912,104.256,1.377)
C2': (91.455,103.406,-0.299)
C2: (86.392,103.153,0.783)
N1: (85.598,104.201,0.547)
N3: (87.716,103.105,0.893)
N6: (85.365,106.454,0.119)
N7: (88.447,106.567,0.392)
N9: (89.578,104.667,0.777)
O5': (92.879,106.638,1.609)
O3': (93.830,103.981,-0.842)
Image (generated by PyMOL):