Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A7:A56
Extra
PDB:
ATOM 1 O3' C A 6 0.272 24.074 17.042 1.00 20.94 O
ATOM 2 P G A 7 -0.340 25.223 17.955 1.00 23.03 P
ATOM 3 OP1 G A 7 0.880 25.979 18.368 1.00 21.35 O
ATOM 4 OP2 G A 7 -1.223 24.615 18.992 1.00 22.70 O
ATOM 5 O5' G A 7 -1.251 26.066 16.953 1.00 23.14 O
ATOM 6 C5' G A 7 -0.711 26.657 15.781 1.00 21.41 C
ATOM 7 C4' G A 7 -1.146 28.091 15.660 1.00 18.23 C
ATOM 8 O4' G A 7 -2.605 28.177 15.685 1.00 20.19 O
ATOM 9 C3' G A 7 -0.704 29.015 16.788 1.00 18.25 C
ATOM 10 O3' G A 7 0.633 29.455 16.623 1.00 19.30 O
ATOM 11 C2' G A 7 -1.736 30.130 16.692 1.00 18.73 C
ATOM 12 O2' G A 7 -1.478 30.930 15.542 1.00 18.53 O
ATOM 13 C1' G A 7 -3.008 29.322 16.400 1.00 18.54 C
ATOM 14 N9 G A 7 -3.702 28.881 17.632 1.00 18.56 N
ATOM 15 C8 G A 7 -3.600 27.659 18.256 1.00 19.03 C
ATOM 16 N7 G A 7 -4.334 27.562 19.338 1.00 19.30 N
ATOM 17 C5 G A 7 -4.961 28.803 19.439 1.00 19.03 C
ATOM 18 C6 G A 7 -5.874 29.310 20.401 1.00 21.69 C
ATOM 19 O6 G A 7 -6.335 28.714 21.385 1.00 23.01 O
ATOM 20 N1 G A 7 -6.268 30.627 20.136 1.00 18.05 N
ATOM 21 C2 G A 7 -5.819 31.361 19.062 1.00 20.62 C
ATOM 22 N2 G A 7 -6.281 32.618 18.939 1.00 19.93 N
ATOM 23 N3 G A 7 -4.969 30.895 18.154 1.00 20.21 N
ATOM 24 C4 G A 7 -4.576 29.627 18.400 1.00 19.35 C
ATOM 25 P U A 8 1.542 29.843 17.890 1.00 19.41 P
ATOM 26 OP1 U A 8 2.919 29.873 17.394 1.00 20.32 O
ATOM 27 OP2 U A 8 1.181 28.962 19.005 1.00 17.93 O
ATOM 28 O5' U A 8 1.028 31.300 18.215 1.00 17.90 O
TER
ATOM 1 O3' A B 55 -11.386 35.876 12.379 1.00 24.95 O
ATOM 2 P A B 56 -11.114 37.361 12.932 1.00 26.63 P
ATOM 3 OP1 A B 56 -12.438 38.022 12.992 1.00 28.97 O
ATOM 4 OP2 A B 56 -10.077 38.018 12.104 1.00 23.26 O
ATOM 5 O5' A B 56 -10.574 37.103 14.402 1.00 26.30 O
ATOM 6 C5' A B 56 -11.375 36.445 15.370 1.00 25.35 C
ATOM 7 C4' A B 56 -10.532 35.952 16.518 1.00 21.59 C
ATOM 8 O4' A B 56 -9.679 34.868 16.061 1.00 21.13 O
ATOM 9 C3' A B 56 -9.578 36.971 17.128 1.00 24.77 C
ATOM 10 O3' A B 56 -10.208 37.786 18.110 1.00 25.35 O
ATOM 11 C2' A B 56 -8.506 36.067 17.713 1.00 22.08 C
ATOM 12 O2' A B 56 -9.050 35.446 18.865 1.00 22.16 O
ATOM 13 C1' A B 56 -8.402 34.975 16.649 1.00 20.72 C
ATOM 14 N9 A B 56 -7.434 35.266 15.569 1.00 18.11 N
ATOM 15 C8 A B 56 -7.647 35.930 14.388 1.00 22.19 C
ATOM 16 N7 A B 56 -6.589 36.002 13.600 1.00 20.75 N
ATOM 17 C5 A B 56 -5.617 35.308 14.308 1.00 21.11 C
ATOM 18 C6 A B 56 -4.266 35.015 14.030 1.00 19.54 C
ATOM 19 N6 A B 56 -3.639 35.389 12.915 1.00 19.58 N
ATOM 20 N1 A B 56 -3.572 34.320 14.957 1.00 19.35 N
ATOM 21 C2 A B 56 -4.205 33.942 16.076 1.00 19.84 C
ATOM 22 N3 A B 56 -5.473 34.153 16.448 1.00 20.03 N
ATOM 23 C4 A B 56 -6.127 34.854 15.514 1.00 19.39 C
ATOM 24 P A B 57 -9.662 39.227 18.562 1.00 26.21 P
ATOM 25 OP1 A B 57 -10.584 39.712 19.624 1.00 24.07 O
ATOM 26 OP2 A B 57 -9.453 40.032 17.335 1.00 23.16 O
ATOM 27 O5' A B 57 -8.241 38.918 19.235 1.00 21.69 O
TER
ATOM 2 P G A 7 -0.340 25.223 17.955 1.00 23.03 P
ATOM 3 OP1 G A 7 0.880 25.979 18.368 1.00 21.35 O
ATOM 4 OP2 G A 7 -1.223 24.615 18.992 1.00 22.70 O
ATOM 5 O5' G A 7 -1.251 26.066 16.953 1.00 23.14 O
ATOM 6 C5' G A 7 -0.711 26.657 15.781 1.00 21.41 C
ATOM 7 C4' G A 7 -1.146 28.091 15.660 1.00 18.23 C
ATOM 8 O4' G A 7 -2.605 28.177 15.685 1.00 20.19 O
ATOM 9 C3' G A 7 -0.704 29.015 16.788 1.00 18.25 C
ATOM 10 O3' G A 7 0.633 29.455 16.623 1.00 19.30 O
ATOM 11 C2' G A 7 -1.736 30.130 16.692 1.00 18.73 C
ATOM 12 O2' G A 7 -1.478 30.930 15.542 1.00 18.53 O
ATOM 13 C1' G A 7 -3.008 29.322 16.400 1.00 18.54 C
ATOM 14 N9 G A 7 -3.702 28.881 17.632 1.00 18.56 N
ATOM 15 C8 G A 7 -3.600 27.659 18.256 1.00 19.03 C
ATOM 16 N7 G A 7 -4.334 27.562 19.338 1.00 19.30 N
ATOM 17 C5 G A 7 -4.961 28.803 19.439 1.00 19.03 C
ATOM 18 C6 G A 7 -5.874 29.310 20.401 1.00 21.69 C
ATOM 19 O6 G A 7 -6.335 28.714 21.385 1.00 23.01 O
ATOM 20 N1 G A 7 -6.268 30.627 20.136 1.00 18.05 N
ATOM 21 C2 G A 7 -5.819 31.361 19.062 1.00 20.62 C
ATOM 22 N2 G A 7 -6.281 32.618 18.939 1.00 19.93 N
ATOM 23 N3 G A 7 -4.969 30.895 18.154 1.00 20.21 N
ATOM 24 C4 G A 7 -4.576 29.627 18.400 1.00 19.35 C
ATOM 25 P U A 8 1.542 29.843 17.890 1.00 19.41 P
ATOM 26 OP1 U A 8 2.919 29.873 17.394 1.00 20.32 O
ATOM 27 OP2 U A 8 1.181 28.962 19.005 1.00 17.93 O
ATOM 28 O5' U A 8 1.028 31.300 18.215 1.00 17.90 O
TER
ATOM 1 O3' A B 55 -11.386 35.876 12.379 1.00 24.95 O
ATOM 2 P A B 56 -11.114 37.361 12.932 1.00 26.63 P
ATOM 3 OP1 A B 56 -12.438 38.022 12.992 1.00 28.97 O
ATOM 4 OP2 A B 56 -10.077 38.018 12.104 1.00 23.26 O
ATOM 5 O5' A B 56 -10.574 37.103 14.402 1.00 26.30 O
ATOM 6 C5' A B 56 -11.375 36.445 15.370 1.00 25.35 C
ATOM 7 C4' A B 56 -10.532 35.952 16.518 1.00 21.59 C
ATOM 8 O4' A B 56 -9.679 34.868 16.061 1.00 21.13 O
ATOM 9 C3' A B 56 -9.578 36.971 17.128 1.00 24.77 C
ATOM 10 O3' A B 56 -10.208 37.786 18.110 1.00 25.35 O
ATOM 11 C2' A B 56 -8.506 36.067 17.713 1.00 22.08 C
ATOM 12 O2' A B 56 -9.050 35.446 18.865 1.00 22.16 O
ATOM 13 C1' A B 56 -8.402 34.975 16.649 1.00 20.72 C
ATOM 14 N9 A B 56 -7.434 35.266 15.569 1.00 18.11 N
ATOM 15 C8 A B 56 -7.647 35.930 14.388 1.00 22.19 C
ATOM 16 N7 A B 56 -6.589 36.002 13.600 1.00 20.75 N
ATOM 17 C5 A B 56 -5.617 35.308 14.308 1.00 21.11 C
ATOM 18 C6 A B 56 -4.266 35.015 14.030 1.00 19.54 C
ATOM 19 N6 A B 56 -3.639 35.389 12.915 1.00 19.58 N
ATOM 20 N1 A B 56 -3.572 34.320 14.957 1.00 19.35 N
ATOM 21 C2 A B 56 -4.205 33.942 16.076 1.00 19.84 C
ATOM 22 N3 A B 56 -5.473 34.153 16.448 1.00 20.03 N
ATOM 23 C4 A B 56 -6.127 34.854 15.514 1.00 19.39 C
ATOM 24 P A B 57 -9.662 39.227 18.562 1.00 26.21 P
ATOM 25 OP1 A B 57 -10.584 39.712 19.624 1.00 24.07 O
ATOM 26 OP2 A B 57 -9.453 40.032 17.335 1.00 23.16 O
ATOM 27 O5' A B 57 -8.241 38.918 19.235 1.00 21.69 O
TER
Atoms:
OP1: (0.880,25.979,18.368)
OP2: (-1.223,24.615,18.992)
C3': (-0.704,29.015,16.788)
C1': (-3.008,29.322,16.400)
C5': (-0.711,26.657,15.781)
O6: (-6.335,28.714,21.385)
O4': (-2.605,28.177,15.685)
C8: (-3.600,27.659,18.256)
C2: (-5.819,31.361,19.062)
C6: (-5.874,29.310,20.401)
C5: (-4.961,28.803,19.439)
C4: (-4.576,29.627,18.400)
P: (-0.340,25.223,17.955)
C4': (-1.146,28.091,15.660)
C2': (-1.736,30.130,16.692)
O2': (-1.478,30.930,15.542)
N1: (-6.268,30.627,20.136)
N2: (-6.281,32.618,18.939)
N3: (-4.969,30.895,18.154)
N7: (-4.334,27.562,19.338)
N9: (-3.702,28.881,17.632)
O5': (-1.251,26.066,16.953)
O3': (0.633,29.455,16.623)
OP2: (-1.223,24.615,18.992)
C3': (-0.704,29.015,16.788)
C1': (-3.008,29.322,16.400)
C5': (-0.711,26.657,15.781)
O6: (-6.335,28.714,21.385)
O4': (-2.605,28.177,15.685)
C8: (-3.600,27.659,18.256)
C2: (-5.819,31.361,19.062)
C6: (-5.874,29.310,20.401)
C5: (-4.961,28.803,19.439)
C4: (-4.576,29.627,18.400)
P: (-0.340,25.223,17.955)
C4': (-1.146,28.091,15.660)
C2': (-1.736,30.130,16.692)
O2': (-1.478,30.930,15.542)
N1: (-6.268,30.627,20.136)
N2: (-6.281,32.618,18.939)
N3: (-4.969,30.895,18.154)
N7: (-4.334,27.562,19.338)
N9: (-3.702,28.881,17.632)
O5': (-1.251,26.066,16.953)
O3': (0.633,29.455,16.623)
OP1: (-12.438,38.022,12.992)
OP2: (-10.077,38.018,12.104)
C3': (-9.578,36.971,17.128)
C1': (-8.402,34.975,16.649)
C5': (-11.375,36.445,15.370)
O4': (-9.679,34.868,16.061)
C8: (-7.647,35.930,14.388)
O2': (-9.050,35.446,18.865)
C6: (-4.266,35.015,14.030)
C5: (-5.617,35.308,14.308)
C4: (-6.127,34.854,15.514)
P: (-11.114,37.361,12.932)
C4': (-10.532,35.952,16.518)
C2': (-8.506,36.067,17.713)
C2: (-4.205,33.942,16.076)
N1: (-3.572,34.320,14.957)
N3: (-5.473,34.153,16.448)
N6: (-3.639,35.389,12.915)
N7: (-6.589,36.002,13.600)
N9: (-7.434,35.266,15.569)
O5': (-10.574,37.103,14.402)
O3': (-10.208,37.786,18.110)
OP2: (-10.077,38.018,12.104)
C3': (-9.578,36.971,17.128)
C1': (-8.402,34.975,16.649)
C5': (-11.375,36.445,15.370)
O4': (-9.679,34.868,16.061)
C8: (-7.647,35.930,14.388)
O2': (-9.050,35.446,18.865)
C6: (-4.266,35.015,14.030)
C5: (-5.617,35.308,14.308)
C4: (-6.127,34.854,15.514)
P: (-11.114,37.361,12.932)
C4': (-10.532,35.952,16.518)
C2': (-8.506,36.067,17.713)
C2: (-4.205,33.942,16.076)
N1: (-3.572,34.320,14.957)
N3: (-5.473,34.153,16.448)
N6: (-3.639,35.389,12.915)
N7: (-6.589,36.002,13.600)
N9: (-7.434,35.266,15.569)
O5': (-10.574,37.103,14.402)
O3': (-10.208,37.786,18.110)
Image (generated by PyMOL):