Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B29:B66
Extra
PDB:
ATOM 1 O3' G A 28 -18.392 61.157 17.818 1.00108.91 O
ATOM 2 P G A 29 -19.325 62.354 17.288 1.00107.23 P
ATOM 3 OP1 G A 29 -18.428 63.344 16.631 1.00106.76 O
ATOM 4 OP2 G A 29 -20.222 62.790 18.395 1.00105.99 O
ATOM 5 O5' G A 29 -20.220 61.670 16.161 1.00104.12 O
ATOM 6 C5' G A 29 -19.616 61.004 15.058 1.00 98.35 C
ATOM 7 C4' G A 29 -20.532 59.926 14.538 1.00 94.86 C
ATOM 8 O4' G A 29 -20.794 58.963 15.587 1.00 92.95 O
ATOM 9 C3' G A 29 -21.916 60.378 14.105 1.00 93.31 C
ATOM 10 O3' G A 29 -21.914 60.880 12.778 1.00 93.08 O
ATOM 11 C2' G A 29 -22.750 59.107 14.221 1.00 91.64 C
ATOM 12 O2' G A 29 -22.697 58.284 13.079 1.00 91.06 O
ATOM 13 C1' G A 29 -22.069 58.386 15.382 1.00 90.90 C
ATOM 14 N9 G A 29 -22.835 58.452 16.616 1.00 87.97 N
ATOM 15 C8 G A 29 -22.531 59.132 17.769 1.00 86.98 C
ATOM 16 N7 G A 29 -23.432 58.983 18.700 1.00 86.53 N
ATOM 17 C5 G A 29 -24.386 58.157 18.122 1.00 86.27 C
ATOM 18 C6 G A 29 -25.600 57.644 18.647 1.00 86.29 C
ATOM 19 O6 G A 29 -26.092 57.824 19.769 1.00 86.51 O
ATOM 20 N1 G A 29 -26.259 56.846 17.715 1.00 85.12 N
ATOM 21 C2 G A 29 -25.804 56.577 16.445 1.00 84.93 C
ATOM 22 N2 G A 29 -26.571 55.788 15.687 1.00 85.64 N
ATOM 23 N3 G A 29 -24.678 57.049 15.951 1.00 84.90 N
ATOM 24 C4 G A 29 -24.026 57.825 16.837 1.00 86.34 C
ATOM 25 P C A 30 -22.996 61.982 12.352 1.00 93.04 P
ATOM 26 OP1 C A 30 -22.610 62.494 11.009 1.00 92.64 O
ATOM 27 OP2 C A 30 -23.129 62.923 13.494 1.00 93.24 O
ATOM 28 O5' C A 30 -24.359 61.172 12.207 1.00 92.09 O
TER
ATOM 1 O3' A B 65 -28.509 51.393 8.682 1.00 86.65 O
ATOM 2 P A B 66 -29.474 52.517 8.090 1.00 90.31 P
ATOM 3 OP1 A B 66 -30.578 51.857 7.355 1.00 90.56 O
ATOM 4 OP2 A B 66 -28.589 53.485 7.384 1.00 90.06 O
ATOM 5 O5' A B 66 -30.072 53.218 9.388 1.00 90.52 O
ATOM 6 C5' A B 66 -30.733 52.458 10.402 1.00 91.07 C
ATOM 7 C4' A B 66 -30.498 53.100 11.745 1.00 91.39 C
ATOM 8 O4' A B 66 -29.083 53.029 12.046 1.00 90.81 O
ATOM 9 C3' A B 66 -30.827 54.584 11.784 1.00 92.27 C
ATOM 10 O3' A B 66 -32.201 54.798 12.062 1.00 95.16 O
ATOM 11 C2' A B 66 -29.896 55.107 12.868 1.00 90.90 C
ATOM 12 O2' A B 66 -30.404 54.883 14.166 1.00 90.97 O
ATOM 13 C1' A B 66 -28.659 54.234 12.652 1.00 88.58 C
ATOM 14 N9 A B 66 -27.696 54.845 11.743 1.00 84.83 N
ATOM 15 C8 A B 66 -27.863 55.080 10.402 1.00 83.65 C
ATOM 16 N7 A B 66 -26.819 55.618 9.828 1.00 82.87 N
ATOM 17 C5 A B 66 -25.905 55.750 10.860 1.00 82.02 C
ATOM 18 C6 A B 66 -24.602 56.247 10.898 1.00 81.31 C
ATOM 19 N6 A B 66 -23.964 56.721 9.830 1.00 80.92 N
ATOM 20 N1 A B 66 -23.964 56.239 12.087 1.00 81.37 N
ATOM 21 C2 A B 66 -24.607 55.761 13.156 1.00 81.49 C
ATOM 22 N3 A B 66 -25.834 55.262 13.243 1.00 81.58 N
ATOM 23 C4 A B 66 -26.435 55.284 12.046 1.00 82.64 C
ATOM 24 P U B 67 -33.103 55.622 11.016 1.00 98.01 P
ATOM 25 OP1 U B 67 -34.477 55.693 11.581 1.00 98.19 O
ATOM 26 OP2 U B 67 -32.897 55.047 9.654 1.00 97.19 O
ATOM 27 O5' U B 67 -32.465 57.082 11.042 1.00 97.84 O
TER
ATOM 2 P G A 29 -19.325 62.354 17.288 1.00107.23 P
ATOM 3 OP1 G A 29 -18.428 63.344 16.631 1.00106.76 O
ATOM 4 OP2 G A 29 -20.222 62.790 18.395 1.00105.99 O
ATOM 5 O5' G A 29 -20.220 61.670 16.161 1.00104.12 O
ATOM 6 C5' G A 29 -19.616 61.004 15.058 1.00 98.35 C
ATOM 7 C4' G A 29 -20.532 59.926 14.538 1.00 94.86 C
ATOM 8 O4' G A 29 -20.794 58.963 15.587 1.00 92.95 O
ATOM 9 C3' G A 29 -21.916 60.378 14.105 1.00 93.31 C
ATOM 10 O3' G A 29 -21.914 60.880 12.778 1.00 93.08 O
ATOM 11 C2' G A 29 -22.750 59.107 14.221 1.00 91.64 C
ATOM 12 O2' G A 29 -22.697 58.284 13.079 1.00 91.06 O
ATOM 13 C1' G A 29 -22.069 58.386 15.382 1.00 90.90 C
ATOM 14 N9 G A 29 -22.835 58.452 16.616 1.00 87.97 N
ATOM 15 C8 G A 29 -22.531 59.132 17.769 1.00 86.98 C
ATOM 16 N7 G A 29 -23.432 58.983 18.700 1.00 86.53 N
ATOM 17 C5 G A 29 -24.386 58.157 18.122 1.00 86.27 C
ATOM 18 C6 G A 29 -25.600 57.644 18.647 1.00 86.29 C
ATOM 19 O6 G A 29 -26.092 57.824 19.769 1.00 86.51 O
ATOM 20 N1 G A 29 -26.259 56.846 17.715 1.00 85.12 N
ATOM 21 C2 G A 29 -25.804 56.577 16.445 1.00 84.93 C
ATOM 22 N2 G A 29 -26.571 55.788 15.687 1.00 85.64 N
ATOM 23 N3 G A 29 -24.678 57.049 15.951 1.00 84.90 N
ATOM 24 C4 G A 29 -24.026 57.825 16.837 1.00 86.34 C
ATOM 25 P C A 30 -22.996 61.982 12.352 1.00 93.04 P
ATOM 26 OP1 C A 30 -22.610 62.494 11.009 1.00 92.64 O
ATOM 27 OP2 C A 30 -23.129 62.923 13.494 1.00 93.24 O
ATOM 28 O5' C A 30 -24.359 61.172 12.207 1.00 92.09 O
TER
ATOM 1 O3' A B 65 -28.509 51.393 8.682 1.00 86.65 O
ATOM 2 P A B 66 -29.474 52.517 8.090 1.00 90.31 P
ATOM 3 OP1 A B 66 -30.578 51.857 7.355 1.00 90.56 O
ATOM 4 OP2 A B 66 -28.589 53.485 7.384 1.00 90.06 O
ATOM 5 O5' A B 66 -30.072 53.218 9.388 1.00 90.52 O
ATOM 6 C5' A B 66 -30.733 52.458 10.402 1.00 91.07 C
ATOM 7 C4' A B 66 -30.498 53.100 11.745 1.00 91.39 C
ATOM 8 O4' A B 66 -29.083 53.029 12.046 1.00 90.81 O
ATOM 9 C3' A B 66 -30.827 54.584 11.784 1.00 92.27 C
ATOM 10 O3' A B 66 -32.201 54.798 12.062 1.00 95.16 O
ATOM 11 C2' A B 66 -29.896 55.107 12.868 1.00 90.90 C
ATOM 12 O2' A B 66 -30.404 54.883 14.166 1.00 90.97 O
ATOM 13 C1' A B 66 -28.659 54.234 12.652 1.00 88.58 C
ATOM 14 N9 A B 66 -27.696 54.845 11.743 1.00 84.83 N
ATOM 15 C8 A B 66 -27.863 55.080 10.402 1.00 83.65 C
ATOM 16 N7 A B 66 -26.819 55.618 9.828 1.00 82.87 N
ATOM 17 C5 A B 66 -25.905 55.750 10.860 1.00 82.02 C
ATOM 18 C6 A B 66 -24.602 56.247 10.898 1.00 81.31 C
ATOM 19 N6 A B 66 -23.964 56.721 9.830 1.00 80.92 N
ATOM 20 N1 A B 66 -23.964 56.239 12.087 1.00 81.37 N
ATOM 21 C2 A B 66 -24.607 55.761 13.156 1.00 81.49 C
ATOM 22 N3 A B 66 -25.834 55.262 13.243 1.00 81.58 N
ATOM 23 C4 A B 66 -26.435 55.284 12.046 1.00 82.64 C
ATOM 24 P U B 67 -33.103 55.622 11.016 1.00 98.01 P
ATOM 25 OP1 U B 67 -34.477 55.693 11.581 1.00 98.19 O
ATOM 26 OP2 U B 67 -32.897 55.047 9.654 1.00 97.19 O
ATOM 27 O5' U B 67 -32.465 57.082 11.042 1.00 97.84 O
TER
Atoms:
OP1: (-18.428,63.344,16.631)
OP2: (-20.222,62.790,18.395)
C3': (-21.916,60.378,14.105)
C1': (-22.069,58.386,15.382)
C5': (-19.616,61.004,15.058)
O6: (-26.092,57.824,19.769)
O4': (-20.794,58.963,15.587)
C8: (-22.531,59.132,17.769)
C2: (-25.804,56.577,16.445)
C6: (-25.600,57.644,18.647)
C5: (-24.386,58.157,18.122)
C4: (-24.026,57.825,16.837)
P: (-19.325,62.354,17.288)
C4': (-20.532,59.926,14.538)
C2': (-22.750,59.107,14.221)
O2': (-22.697,58.284,13.079)
N1: (-26.259,56.846,17.715)
N2: (-26.571,55.788,15.687)
N3: (-24.678,57.049,15.951)
N7: (-23.432,58.983,18.700)
N9: (-22.835,58.452,16.616)
O5': (-20.220,61.670,16.161)
O3': (-21.914,60.880,12.778)
OP2: (-20.222,62.790,18.395)
C3': (-21.916,60.378,14.105)
C1': (-22.069,58.386,15.382)
C5': (-19.616,61.004,15.058)
O6: (-26.092,57.824,19.769)
O4': (-20.794,58.963,15.587)
C8: (-22.531,59.132,17.769)
C2: (-25.804,56.577,16.445)
C6: (-25.600,57.644,18.647)
C5: (-24.386,58.157,18.122)
C4: (-24.026,57.825,16.837)
P: (-19.325,62.354,17.288)
C4': (-20.532,59.926,14.538)
C2': (-22.750,59.107,14.221)
O2': (-22.697,58.284,13.079)
N1: (-26.259,56.846,17.715)
N2: (-26.571,55.788,15.687)
N3: (-24.678,57.049,15.951)
N7: (-23.432,58.983,18.700)
N9: (-22.835,58.452,16.616)
O5': (-20.220,61.670,16.161)
O3': (-21.914,60.880,12.778)
OP1: (-30.578,51.857,7.355)
OP2: (-28.589,53.485,7.384)
C3': (-30.827,54.584,11.784)
C1': (-28.659,54.234,12.652)
C5': (-30.733,52.458,10.402)
O4': (-29.083,53.029,12.046)
C8: (-27.863,55.080,10.402)
O2': (-30.404,54.883,14.166)
C6: (-24.602,56.247,10.898)
C5: (-25.905,55.750,10.860)
C4: (-26.435,55.284,12.046)
P: (-29.474,52.517,8.090)
C4': (-30.498,53.100,11.745)
C2': (-29.896,55.107,12.868)
C2: (-24.607,55.761,13.156)
N1: (-23.964,56.239,12.087)
N3: (-25.834,55.262,13.243)
N6: (-23.964,56.721,9.830)
N7: (-26.819,55.618,9.828)
N9: (-27.696,54.845,11.743)
O5': (-30.072,53.218,9.388)
O3': (-32.201,54.798,12.062)
OP2: (-28.589,53.485,7.384)
C3': (-30.827,54.584,11.784)
C1': (-28.659,54.234,12.652)
C5': (-30.733,52.458,10.402)
O4': (-29.083,53.029,12.046)
C8: (-27.863,55.080,10.402)
O2': (-30.404,54.883,14.166)
C6: (-24.602,56.247,10.898)
C5: (-25.905,55.750,10.860)
C4: (-26.435,55.284,12.046)
P: (-29.474,52.517,8.090)
C4': (-30.498,53.100,11.745)
C2': (-29.896,55.107,12.868)
C2: (-24.607,55.761,13.156)
N1: (-23.964,56.239,12.087)
N3: (-25.834,55.262,13.243)
N6: (-23.964,56.721,9.830)
N7: (-26.819,55.618,9.828)
N9: (-27.696,54.845,11.743)
O5': (-30.072,53.218,9.388)
O3': (-32.201,54.798,12.062)
Image (generated by PyMOL):