Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01924:01954
Extra
PDB:
ATOM 1 O3' U A1923 100.370 121.548 112.118 1.00 55.37 O
ATOM 2 P A A1924 100.004 123.020 111.576 1.00 57.25 P
ATOM 3 OP1 A A1924 100.428 124.006 112.611 1.00 58.03 O
ATOM 4 OP2 A A1924 98.592 123.012 111.105 1.00 58.57 O
ATOM 5 O5' A A1924 100.941 123.207 110.305 1.00 55.68 O
ATOM 6 C5' A A1924 102.047 124.118 110.344 1.00 56.69 C
ATOM 7 C4' A A1924 102.636 124.300 108.966 1.00 57.48 C
ATOM 8 O4' A A1924 103.386 123.111 108.584 1.00 55.93 O
ATOM 9 C3' A A1924 101.651 124.582 107.829 1.00 57.92 C
ATOM 10 O3' A A1924 102.196 125.544 106.942 1.00 58.15 O
ATOM 11 C2' A A1924 101.583 123.243 107.108 1.00 56.87 C
ATOM 12 O2' A A1924 101.313 123.391 105.731 1.00 59.48 O
ATOM 13 C1' A A1924 103.006 122.725 107.290 1.00 54.52 C
ATOM 14 N9 A A1924 103.105 121.274 107.180 1.00 53.87 N
ATOM 15 C8 A A1924 102.130 120.336 107.413 1.00 53.13 C
ATOM 16 N7 A A1924 102.494 119.115 107.121 1.00 53.36 N
ATOM 17 C5 A A1924 103.805 119.251 106.690 1.00 52.97 C
ATOM 18 C6 A A1924 104.745 118.323 106.222 1.00 51.93 C
ATOM 19 N6 A A1924 104.496 117.017 106.084 1.00 49.80 N
ATOM 20 N1 A A1924 105.966 118.785 105.891 1.00 52.40 N
ATOM 21 C2 A A1924 106.214 120.094 106.018 1.00 53.03 C
ATOM 22 N3 A A1924 105.412 121.066 106.433 1.00 53.19 N
ATOM 23 C4 A A1924 104.205 120.573 106.755 1.00 53.77 C
ATOM 24 P G A1925 101.524 126.993 106.838 1.00 58.19 P
ATOM 25 OP1 G A1925 102.510 127.884 106.171 1.00 60.24 O
ATOM 26 OP2 G A1925 100.988 127.353 108.178 1.00 57.81 O
ATOM 27 O5' G A1925 100.295 126.790 105.853 1.00 60.18 O
TER
ATOM 1 O3' A B1953 103.069 112.104 103.429 1.00 59.30 O
ATOM 2 P U B1954 104.524 112.711 103.677 1.00 57.90 P
ATOM 3 OP1 U B1954 105.506 111.868 102.954 1.00 56.63 O
ATOM 4 OP2 U B1954 104.701 112.969 105.122 1.00 57.28 O
ATOM 5 O5' U B1954 104.398 114.119 102.962 1.00 57.09 O
ATOM 6 C5' U B1954 105.282 114.487 101.925 1.00 56.13 C
ATOM 7 C4' U B1954 105.785 115.875 102.169 1.00 55.78 C
ATOM 8 O4' U B1954 106.327 115.986 103.506 1.00 56.75 O
ATOM 9 C3' U B1954 106.930 116.235 101.266 1.00 55.33 C
ATOM 10 O3' U B1954 106.405 116.651 100.033 1.00 55.23 O
ATOM 11 C2' U B1954 107.637 117.319 102.055 1.00 56.44 C
ATOM 12 O2' U B1954 106.963 118.557 101.987 1.00 57.91 O
ATOM 13 C1' U B1954 107.504 116.772 103.479 1.00 57.53 C
ATOM 14 N1 U B1954 108.629 115.931 103.932 1.00 60.52 N
ATOM 15 C2 U B1954 109.911 116.456 103.872 1.00 61.14 C
ATOM 16 O2 U B1954 110.153 117.579 103.465 1.00 62.80 O
ATOM 17 N3 U B1954 110.902 115.616 104.313 1.00 61.71 N
ATOM 18 C4 U B1954 110.754 114.338 104.803 1.00 61.81 C
ATOM 19 O4 U B1954 111.753 113.696 105.126 1.00 62.56 O
ATOM 20 C5 U B1954 109.408 113.867 104.841 1.00 61.80 C
ATOM 21 C6 U B1954 108.417 114.654 104.413 1.00 61.29 C
ATOM 22 P G B1955 106.907 115.940 98.701 1.00 56.50 P
ATOM 23 OP1 G B1955 106.151 116.508 97.556 1.00 56.57 O
ATOM 24 OP2 G B1955 106.928 114.460 98.919 1.00 55.13 O
ATOM 25 O5' G B1955 108.393 116.481 98.604 1.00 57.08 O
TER
ATOM 2 P A A1924 100.004 123.020 111.576 1.00 57.25 P
ATOM 3 OP1 A A1924 100.428 124.006 112.611 1.00 58.03 O
ATOM 4 OP2 A A1924 98.592 123.012 111.105 1.00 58.57 O
ATOM 5 O5' A A1924 100.941 123.207 110.305 1.00 55.68 O
ATOM 6 C5' A A1924 102.047 124.118 110.344 1.00 56.69 C
ATOM 7 C4' A A1924 102.636 124.300 108.966 1.00 57.48 C
ATOM 8 O4' A A1924 103.386 123.111 108.584 1.00 55.93 O
ATOM 9 C3' A A1924 101.651 124.582 107.829 1.00 57.92 C
ATOM 10 O3' A A1924 102.196 125.544 106.942 1.00 58.15 O
ATOM 11 C2' A A1924 101.583 123.243 107.108 1.00 56.87 C
ATOM 12 O2' A A1924 101.313 123.391 105.731 1.00 59.48 O
ATOM 13 C1' A A1924 103.006 122.725 107.290 1.00 54.52 C
ATOM 14 N9 A A1924 103.105 121.274 107.180 1.00 53.87 N
ATOM 15 C8 A A1924 102.130 120.336 107.413 1.00 53.13 C
ATOM 16 N7 A A1924 102.494 119.115 107.121 1.00 53.36 N
ATOM 17 C5 A A1924 103.805 119.251 106.690 1.00 52.97 C
ATOM 18 C6 A A1924 104.745 118.323 106.222 1.00 51.93 C
ATOM 19 N6 A A1924 104.496 117.017 106.084 1.00 49.80 N
ATOM 20 N1 A A1924 105.966 118.785 105.891 1.00 52.40 N
ATOM 21 C2 A A1924 106.214 120.094 106.018 1.00 53.03 C
ATOM 22 N3 A A1924 105.412 121.066 106.433 1.00 53.19 N
ATOM 23 C4 A A1924 104.205 120.573 106.755 1.00 53.77 C
ATOM 24 P G A1925 101.524 126.993 106.838 1.00 58.19 P
ATOM 25 OP1 G A1925 102.510 127.884 106.171 1.00 60.24 O
ATOM 26 OP2 G A1925 100.988 127.353 108.178 1.00 57.81 O
ATOM 27 O5' G A1925 100.295 126.790 105.853 1.00 60.18 O
TER
ATOM 1 O3' A B1953 103.069 112.104 103.429 1.00 59.30 O
ATOM 2 P U B1954 104.524 112.711 103.677 1.00 57.90 P
ATOM 3 OP1 U B1954 105.506 111.868 102.954 1.00 56.63 O
ATOM 4 OP2 U B1954 104.701 112.969 105.122 1.00 57.28 O
ATOM 5 O5' U B1954 104.398 114.119 102.962 1.00 57.09 O
ATOM 6 C5' U B1954 105.282 114.487 101.925 1.00 56.13 C
ATOM 7 C4' U B1954 105.785 115.875 102.169 1.00 55.78 C
ATOM 8 O4' U B1954 106.327 115.986 103.506 1.00 56.75 O
ATOM 9 C3' U B1954 106.930 116.235 101.266 1.00 55.33 C
ATOM 10 O3' U B1954 106.405 116.651 100.033 1.00 55.23 O
ATOM 11 C2' U B1954 107.637 117.319 102.055 1.00 56.44 C
ATOM 12 O2' U B1954 106.963 118.557 101.987 1.00 57.91 O
ATOM 13 C1' U B1954 107.504 116.772 103.479 1.00 57.53 C
ATOM 14 N1 U B1954 108.629 115.931 103.932 1.00 60.52 N
ATOM 15 C2 U B1954 109.911 116.456 103.872 1.00 61.14 C
ATOM 16 O2 U B1954 110.153 117.579 103.465 1.00 62.80 O
ATOM 17 N3 U B1954 110.902 115.616 104.313 1.00 61.71 N
ATOM 18 C4 U B1954 110.754 114.338 104.803 1.00 61.81 C
ATOM 19 O4 U B1954 111.753 113.696 105.126 1.00 62.56 O
ATOM 20 C5 U B1954 109.408 113.867 104.841 1.00 61.80 C
ATOM 21 C6 U B1954 108.417 114.654 104.413 1.00 61.29 C
ATOM 22 P G B1955 106.907 115.940 98.701 1.00 56.50 P
ATOM 23 OP1 G B1955 106.151 116.508 97.556 1.00 56.57 O
ATOM 24 OP2 G B1955 106.928 114.460 98.919 1.00 55.13 O
ATOM 25 O5' G B1955 108.393 116.481 98.604 1.00 57.08 O
TER
Atoms:
OP1: (100.428,124.006,112.611)
OP2: (98.592,123.012,111.105)
C3': (101.651,124.582,107.829)
C1': (103.006,122.725,107.290)
C5': (102.047,124.118,110.344)
O4': (103.386,123.111,108.584)
C8: (102.130,120.336,107.413)
O2': (101.313,123.391,105.731)
C6: (104.745,118.323,106.222)
C5: (103.805,119.251,106.690)
C4: (104.205,120.573,106.755)
P: (100.004,123.020,111.576)
C4': (102.636,124.300,108.966)
C2': (101.583,123.243,107.108)
C2: (106.214,120.094,106.018)
N1: (105.966,118.785,105.891)
N3: (105.412,121.066,106.433)
N6: (104.496,117.017,106.084)
N7: (102.494,119.115,107.121)
N9: (103.105,121.274,107.180)
O5': (100.941,123.207,110.305)
O3': (102.196,125.544,106.942)
OP2: (98.592,123.012,111.105)
C3': (101.651,124.582,107.829)
C1': (103.006,122.725,107.290)
C5': (102.047,124.118,110.344)
O4': (103.386,123.111,108.584)
C8: (102.130,120.336,107.413)
O2': (101.313,123.391,105.731)
C6: (104.745,118.323,106.222)
C5: (103.805,119.251,106.690)
C4: (104.205,120.573,106.755)
P: (100.004,123.020,111.576)
C4': (102.636,124.300,108.966)
C2': (101.583,123.243,107.108)
C2: (106.214,120.094,106.018)
N1: (105.966,118.785,105.891)
N3: (105.412,121.066,106.433)
N6: (104.496,117.017,106.084)
N7: (102.494,119.115,107.121)
N9: (103.105,121.274,107.180)
O5': (100.941,123.207,110.305)
O3': (102.196,125.544,106.942)
C4: (110.754,114.338,104.803)
N3: (110.902,115.616,104.313)
OP1: (105.506,111.868,102.954)
OP2: (104.701,112.969,105.122)
C2: (109.911,116.456,103.872)
C1': (107.504,116.772,103.479)
C3': (106.930,116.235,101.266)
O5': (104.398,114.119,102.962)
O4': (106.327,115.986,103.506)
C5': (105.282,114.487,101.925)
P: (104.524,112.711,103.677)
C4': (105.785,115.875,102.169)
C2': (107.637,117.319,102.055)
O2': (106.963,118.557,101.987)
N1: (108.629,115.931,103.932)
O4: (111.753,113.696,105.126)
O2: (110.153,117.579,103.465)
C6: (108.417,114.654,104.413)
C5: (109.408,113.867,104.841)
O3': (106.405,116.651,100.033)
N3: (110.902,115.616,104.313)
OP1: (105.506,111.868,102.954)
OP2: (104.701,112.969,105.122)
C2: (109.911,116.456,103.872)
C1': (107.504,116.772,103.479)
C3': (106.930,116.235,101.266)
O5': (104.398,114.119,102.962)
O4': (106.327,115.986,103.506)
C5': (105.282,114.487,101.925)
P: (104.524,112.711,103.677)
C4': (105.785,115.875,102.169)
C2': (107.637,117.319,102.055)
O2': (106.963,118.557,101.987)
N1: (108.629,115.931,103.932)
O4: (111.753,113.696,105.126)
O2: (110.153,117.579,103.465)
C6: (108.417,114.654,104.413)
C5: (109.408,113.867,104.841)
O3': (106.405,116.651,100.033)
Image (generated by PyMOL):