Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SKI:B11:B39
Extra
PDB:
ATOM 1 O3' A A 10 -0.386 -0.538 0.745 1.00 35.90 O
ATOM 2 P G A 11 -0.901 0.864 1.344 1.00 36.38 P
ATOM 3 OP1 G A 11 -0.100 1.932 0.709 1.00 36.69 O
ATOM 4 OP2 G A 11 -0.953 0.779 2.816 1.00 38.21 O
ATOM 5 O5' G A 11 -2.404 0.979 0.812 1.00 35.28 O
ATOM 6 C5' G A 11 -2.712 0.856 -0.572 1.00 33.95 C
ATOM 7 C4' G A 11 -3.698 -0.279 -0.794 1.00 33.59 C
ATOM 8 O4' G A 11 -4.993 0.061 -0.248 1.00 34.10 O
ATOM 9 C3' G A 11 -3.953 -0.644 -2.253 1.00 32.28 C
ATOM 10 O3' G A 11 -3.493 -1.965 -2.474 1.00 32.77 O
ATOM 11 C2' G A 11 -5.472 -0.530 -2.426 1.00 32.02 C
ATOM 12 O2' G A 11 -6.022 -1.570 -3.210 1.00 31.60 O
ATOM 13 C1' G A 11 -5.950 -0.655 -0.989 1.00 33.38 C
ATOM 14 N9 G A 11 -7.279 -0.103 -0.735 1.00 33.61 N
ATOM 15 C8 G A 11 -7.659 1.216 -0.801 1.00 33.99 C
ATOM 16 N7 G A 11 -8.916 1.411 -0.519 1.00 35.11 N
ATOM 17 C5 G A 11 -9.406 0.140 -0.250 1.00 35.87 C
ATOM 18 C6 G A 11 -10.713 -0.278 0.117 1.00 37.69 C
ATOM 19 O6 G A 11 -11.724 0.422 0.281 1.00 39.44 O
ATOM 20 N1 G A 11 -10.786 -1.663 0.301 1.00 38.00 N
ATOM 21 C2 G A 11 -9.725 -2.532 0.146 1.00 36.82 C
ATOM 22 N2 G A 11 -9.986 -3.829 0.363 1.00 37.83 N
ATOM 23 N3 G A 11 -8.495 -2.151 -0.198 1.00 35.31 N
ATOM 24 C4 G A 11 -8.408 -0.806 -0.377 1.00 34.88 C
ATOM 25 P G A 12 -2.781 -2.348 -3.851 1.00 32.02 P
ATOM 26 OP1 G A 12 -1.552 -1.531 -3.968 1.00 32.46 O
ATOM 27 OP2 G A 12 -3.807 -2.301 -4.920 1.00 30.49 O
ATOM 28 O5' G A 12 -2.421 -3.888 -3.617 1.00 33.21 O
TER
ATOM 1 O3' C B 38 -6.344 3.789 1.344 1.00 37.82 O
ATOM 2 P C B 39 -7.181 4.687 0.315 1.00 40.38 P
ATOM 3 OP1 C B 39 -8.624 4.514 0.604 1.00 40.28 O
ATOM 4 OP2 C B 39 -6.664 4.413 -1.048 1.00 38.62 O
ATOM 5 O5' C B 39 -6.769 6.178 0.729 1.00 42.02 O
ATOM 6 C5' C B 39 -5.414 6.608 0.624 1.00 43.40 C
ATOM 7 C4' C B 39 -5.070 7.539 1.770 1.00 46.27 C
ATOM 8 O4' C B 39 -5.050 6.797 3.018 1.00 48.11 O
ATOM 9 C3' C B 39 -3.684 8.152 1.675 1.00 47.56 C
ATOM 10 O3' C B 39 -3.702 9.303 0.835 1.00 47.76 O
ATOM 11 C2' C B 39 -3.393 8.480 3.134 1.00 50.20 C
ATOM 12 O2' C B 39 -4.051 9.652 3.584 1.00 51.41 O
ATOM 13 C1' C B 39 -3.972 7.245 3.826 1.00 50.35 C
ATOM 14 N1 C B 39 -2.979 6.116 4.040 1.00 50.68 N
ATOM 15 C2 C B 39 -1.963 6.239 5.012 1.00 53.27 C
ATOM 16 O2 C B 39 -1.877 7.270 5.693 1.00 55.41 O
ATOM 17 N3 C B 39 -1.088 5.211 5.185 1.00 53.53 N
ATOM 18 C4 C B 39 -1.190 4.101 4.446 1.00 51.53 C
ATOM 19 N4 C B 39 -0.302 3.123 4.659 1.00 52.23 N
ATOM 20 C5 C B 39 -2.210 3.952 3.456 1.00 49.15 C
ATOM 21 C6 C B 39 -3.069 4.968 3.292 1.00 48.66 C
ATOM 22 P U B 40 -2.451 9.628 -0.111 1.00 48.04 P
ATOM 23 OP1 U B 40 -2.854 10.713 -1.038 1.00 47.07 O
ATOM 24 OP2 U B 40 -1.929 8.351 -0.656 1.00 46.65 O
ATOM 25 O5' U B 40 -1.363 10.201 0.915 1.00 51.00 O
TER
ATOM 2 P G A 11 -0.901 0.864 1.344 1.00 36.38 P
ATOM 3 OP1 G A 11 -0.100 1.932 0.709 1.00 36.69 O
ATOM 4 OP2 G A 11 -0.953 0.779 2.816 1.00 38.21 O
ATOM 5 O5' G A 11 -2.404 0.979 0.812 1.00 35.28 O
ATOM 6 C5' G A 11 -2.712 0.856 -0.572 1.00 33.95 C
ATOM 7 C4' G A 11 -3.698 -0.279 -0.794 1.00 33.59 C
ATOM 8 O4' G A 11 -4.993 0.061 -0.248 1.00 34.10 O
ATOM 9 C3' G A 11 -3.953 -0.644 -2.253 1.00 32.28 C
ATOM 10 O3' G A 11 -3.493 -1.965 -2.474 1.00 32.77 O
ATOM 11 C2' G A 11 -5.472 -0.530 -2.426 1.00 32.02 C
ATOM 12 O2' G A 11 -6.022 -1.570 -3.210 1.00 31.60 O
ATOM 13 C1' G A 11 -5.950 -0.655 -0.989 1.00 33.38 C
ATOM 14 N9 G A 11 -7.279 -0.103 -0.735 1.00 33.61 N
ATOM 15 C8 G A 11 -7.659 1.216 -0.801 1.00 33.99 C
ATOM 16 N7 G A 11 -8.916 1.411 -0.519 1.00 35.11 N
ATOM 17 C5 G A 11 -9.406 0.140 -0.250 1.00 35.87 C
ATOM 18 C6 G A 11 -10.713 -0.278 0.117 1.00 37.69 C
ATOM 19 O6 G A 11 -11.724 0.422 0.281 1.00 39.44 O
ATOM 20 N1 G A 11 -10.786 -1.663 0.301 1.00 38.00 N
ATOM 21 C2 G A 11 -9.725 -2.532 0.146 1.00 36.82 C
ATOM 22 N2 G A 11 -9.986 -3.829 0.363 1.00 37.83 N
ATOM 23 N3 G A 11 -8.495 -2.151 -0.198 1.00 35.31 N
ATOM 24 C4 G A 11 -8.408 -0.806 -0.377 1.00 34.88 C
ATOM 25 P G A 12 -2.781 -2.348 -3.851 1.00 32.02 P
ATOM 26 OP1 G A 12 -1.552 -1.531 -3.968 1.00 32.46 O
ATOM 27 OP2 G A 12 -3.807 -2.301 -4.920 1.00 30.49 O
ATOM 28 O5' G A 12 -2.421 -3.888 -3.617 1.00 33.21 O
TER
ATOM 1 O3' C B 38 -6.344 3.789 1.344 1.00 37.82 O
ATOM 2 P C B 39 -7.181 4.687 0.315 1.00 40.38 P
ATOM 3 OP1 C B 39 -8.624 4.514 0.604 1.00 40.28 O
ATOM 4 OP2 C B 39 -6.664 4.413 -1.048 1.00 38.62 O
ATOM 5 O5' C B 39 -6.769 6.178 0.729 1.00 42.02 O
ATOM 6 C5' C B 39 -5.414 6.608 0.624 1.00 43.40 C
ATOM 7 C4' C B 39 -5.070 7.539 1.770 1.00 46.27 C
ATOM 8 O4' C B 39 -5.050 6.797 3.018 1.00 48.11 O
ATOM 9 C3' C B 39 -3.684 8.152 1.675 1.00 47.56 C
ATOM 10 O3' C B 39 -3.702 9.303 0.835 1.00 47.76 O
ATOM 11 C2' C B 39 -3.393 8.480 3.134 1.00 50.20 C
ATOM 12 O2' C B 39 -4.051 9.652 3.584 1.00 51.41 O
ATOM 13 C1' C B 39 -3.972 7.245 3.826 1.00 50.35 C
ATOM 14 N1 C B 39 -2.979 6.116 4.040 1.00 50.68 N
ATOM 15 C2 C B 39 -1.963 6.239 5.012 1.00 53.27 C
ATOM 16 O2 C B 39 -1.877 7.270 5.693 1.00 55.41 O
ATOM 17 N3 C B 39 -1.088 5.211 5.185 1.00 53.53 N
ATOM 18 C4 C B 39 -1.190 4.101 4.446 1.00 51.53 C
ATOM 19 N4 C B 39 -0.302 3.123 4.659 1.00 52.23 N
ATOM 20 C5 C B 39 -2.210 3.952 3.456 1.00 49.15 C
ATOM 21 C6 C B 39 -3.069 4.968 3.292 1.00 48.66 C
ATOM 22 P U B 40 -2.451 9.628 -0.111 1.00 48.04 P
ATOM 23 OP1 U B 40 -2.854 10.713 -1.038 1.00 47.07 O
ATOM 24 OP2 U B 40 -1.929 8.351 -0.656 1.00 46.65 O
ATOM 25 O5' U B 40 -1.363 10.201 0.915 1.00 51.00 O
TER
Atoms:
OP1: (-0.100,1.932,0.709)
OP2: (-0.953,0.779,2.816)
C3': (-3.953,-0.644,-2.253)
C1': (-5.950,-0.655,-0.989)
C5': (-2.712,0.856,-0.572)
O6: (-11.724,0.422,0.281)
O4': (-4.993,0.061,-0.248)
C8: (-7.659,1.216,-0.801)
C2: (-9.725,-2.532,0.146)
C6: (-10.713,-0.278,0.117)
C5: (-9.406,0.140,-0.250)
C4: (-8.408,-0.806,-0.377)
P: (-0.901,0.864,1.344)
C4': (-3.698,-0.279,-0.794)
C2': (-5.472,-0.530,-2.426)
O2': (-6.022,-1.570,-3.210)
N1: (-10.786,-1.663,0.301)
N2: (-9.986,-3.829,0.363)
N3: (-8.495,-2.151,-0.198)
N7: (-8.916,1.411,-0.519)
N9: (-7.279,-0.103,-0.735)
O5': (-2.404,0.979,0.812)
O3': (-3.493,-1.965,-2.474)
OP2: (-0.953,0.779,2.816)
C3': (-3.953,-0.644,-2.253)
C1': (-5.950,-0.655,-0.989)
C5': (-2.712,0.856,-0.572)
O6: (-11.724,0.422,0.281)
O4': (-4.993,0.061,-0.248)
C8: (-7.659,1.216,-0.801)
C2: (-9.725,-2.532,0.146)
C6: (-10.713,-0.278,0.117)
C5: (-9.406,0.140,-0.250)
C4: (-8.408,-0.806,-0.377)
P: (-0.901,0.864,1.344)
C4': (-3.698,-0.279,-0.794)
C2': (-5.472,-0.530,-2.426)
O2': (-6.022,-1.570,-3.210)
N1: (-10.786,-1.663,0.301)
N2: (-9.986,-3.829,0.363)
N3: (-8.495,-2.151,-0.198)
N7: (-8.916,1.411,-0.519)
N9: (-7.279,-0.103,-0.735)
O5': (-2.404,0.979,0.812)
O3': (-3.493,-1.965,-2.474)
C2: (-1.963,6.239,5.012)
OP1: (-8.624,4.514,0.604)
OP2: (-6.664,4.413,-1.048)
C4: (-1.190,4.101,4.446)
O5': (-6.769,6.178,0.729)
C3': (-3.684,8.152,1.675)
C1': (-3.972,7.245,3.826)
O4': (-5.050,6.797,3.018)
C5': (-5.414,6.608,0.624)
P: (-7.181,4.687,0.315)
O2: (-1.877,7.270,5.693)
C4': (-5.070,7.539,1.770)
C2': (-3.393,8.480,3.134)
O2': (-4.051,9.652,3.584)
N1: (-2.979,6.116,4.040)
N3: (-1.088,5.211,5.185)
N4: (-0.302,3.123,4.659)
C6: (-3.069,4.968,3.292)
C5: (-2.210,3.952,3.456)
O3': (-3.702,9.303,0.835)
OP1: (-8.624,4.514,0.604)
OP2: (-6.664,4.413,-1.048)
C4: (-1.190,4.101,4.446)
O5': (-6.769,6.178,0.729)
C3': (-3.684,8.152,1.675)
C1': (-3.972,7.245,3.826)
O4': (-5.050,6.797,3.018)
C5': (-5.414,6.608,0.624)
P: (-7.181,4.687,0.315)
O2: (-1.877,7.270,5.693)
C4': (-5.070,7.539,1.770)
C2': (-3.393,8.480,3.134)
O2': (-4.051,9.652,3.584)
N1: (-2.979,6.116,4.040)
N3: (-1.088,5.211,5.185)
N4: (-0.302,3.123,4.659)
C6: (-3.069,4.968,3.292)
C5: (-2.210,3.952,3.456)
O3': (-3.702,9.303,0.835)
Image (generated by PyMOL):