Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12568:12622
Extra
PDB:
ATOM 1 O3' G A2567 39.182 -9.047 62.915 1.00 36.64 O
ATOM 2 P G A2568 40.593 -8.403 62.425 1.00 39.71 P
ATOM 3 OP1 G A2568 41.478 -9.529 61.981 1.00 39.72 O
ATOM 4 OP2 G A2568 41.092 -7.488 63.484 1.00 39.69 O
ATOM 5 O5' G A2568 40.150 -7.560 61.179 1.00 39.75 O
ATOM 6 C5' G A2568 39.288 -6.468 61.363 1.00 39.77 C
ATOM 7 C4' G A2568 38.029 -6.669 60.621 1.00 39.82 C
ATOM 8 O4' G A2568 37.026 -5.754 61.113 1.00 39.85 O
ATOM 9 C3' G A2568 38.126 -6.405 59.128 1.00 39.88 C
ATOM 10 O3' G A2568 37.274 -7.313 58.450 1.00 39.92 O
ATOM 11 C2' G A2568 37.532 -5.021 59.024 1.00 39.92 C
ATOM 12 O2' G A2568 37.076 -4.687 57.748 1.00 40.01 O
ATOM 13 C1' G A2568 36.406 -5.199 59.993 1.00 39.92 C
ATOM 14 N9 G A2568 35.670 -3.996 60.348 1.00 39.96 N
ATOM 15 C8 G A2568 36.099 -2.813 60.889 1.00 39.97 C
ATOM 16 N7 G A2568 35.122 -1.990 61.031 1.00 40.03 N
ATOM 17 C5 G A2568 34.018 -2.696 60.567 1.00 40.07 C
ATOM 18 C6 G A2568 32.702 -2.285 60.478 1.00 40.15 C
ATOM 19 O6 G A2568 32.301 -1.194 60.812 1.00 40.21 O
ATOM 20 N1 G A2568 31.832 -3.207 60.002 1.00 40.18 N
ATOM 21 C2 G A2568 32.218 -4.432 59.609 1.00 40.13 C
ATOM 22 N2 G A2568 31.190 -5.173 59.139 1.00 40.19 N
ATOM 23 N3 G A2568 33.491 -4.850 59.651 1.00 40.06 N
ATOM 24 C4 G A2568 34.319 -3.925 60.151 1.00 40.03 C
ATOM 25 P A A2569 37.852 -8.561 57.649 1.00 35.47 P
ATOM 26 OP1 A A2569 39.227 -8.202 57.141 1.00 35.46 O
ATOM 27 OP2 A A2569 36.869 -8.905 56.650 1.00 35.56 O
ATOM 28 O5' A A2569 37.925 -9.672 58.750 1.00 35.42 O
TER
ATOM 1 O3' U B2621 38.332 0.591 61.307 1.00 38.54 O
ATOM 2 P C B2622 38.781 -0.504 62.381 1.00 55.35 P
ATOM 3 OP1 C B2622 39.761 0.129 63.267 1.00 55.35 O
ATOM 4 OP2 C B2622 39.197 -1.713 61.627 1.00 55.30 O
ATOM 5 O5' C B2622 37.446 -0.800 63.171 1.00 55.36 O
ATOM 6 C5' C B2622 37.040 0.006 64.249 1.00 55.40 C
ATOM 7 C4' C B2622 35.979 -0.684 65.081 1.00 55.39 C
ATOM 8 O4' C B2622 35.056 -1.425 64.237 1.00 55.39 O
ATOM 9 C3' C B2622 36.467 -1.720 66.088 1.00 55.32 C
ATOM 10 O3' C B2622 36.991 -1.123 67.314 1.00 55.34 O
ATOM 11 C2' C B2622 35.224 -2.638 66.283 1.00 55.32 C
ATOM 12 O2' C B2622 34.495 -2.296 67.452 1.00 55.37 O
ATOM 13 C1' C B2622 34.353 -2.322 65.054 1.00 55.37 C
ATOM 14 N1 C B2622 33.918 -3.529 64.289 1.00 55.35 N
ATOM 15 C2 C B2622 32.546 -3.525 64.134 1.00 55.42 C
ATOM 16 O2 C B2622 31.939 -2.554 64.579 1.00 55.48 O
ATOM 17 N3 C B2622 31.918 -4.534 63.485 1.00 55.43 N
ATOM 18 C4 C B2622 32.596 -5.567 63.041 1.00 55.37 C
ATOM 19 N4 C B2622 31.821 -6.440 62.448 1.00 55.41 N
ATOM 20 C5 C B2622 34.011 -5.690 63.169 1.00 55.30 C
ATOM 21 C6 C B2622 34.605 -4.639 63.800 1.00 55.30 C
ATOM 22 P G B2623 38.471 -1.542 67.928 1.00 87.03 P
ATOM 23 OP1 G B2623 39.441 -1.584 66.798 1.00 87.00 O
ATOM 24 OP2 G B2623 38.278 -2.782 68.777 1.00 87.00 O
ATOM 25 O5' G B2623 38.816 -0.320 68.879 1.00 87.11 O
TER
ATOM 2 P G A2568 40.593 -8.403 62.425 1.00 39.71 P
ATOM 3 OP1 G A2568 41.478 -9.529 61.981 1.00 39.72 O
ATOM 4 OP2 G A2568 41.092 -7.488 63.484 1.00 39.69 O
ATOM 5 O5' G A2568 40.150 -7.560 61.179 1.00 39.75 O
ATOM 6 C5' G A2568 39.288 -6.468 61.363 1.00 39.77 C
ATOM 7 C4' G A2568 38.029 -6.669 60.621 1.00 39.82 C
ATOM 8 O4' G A2568 37.026 -5.754 61.113 1.00 39.85 O
ATOM 9 C3' G A2568 38.126 -6.405 59.128 1.00 39.88 C
ATOM 10 O3' G A2568 37.274 -7.313 58.450 1.00 39.92 O
ATOM 11 C2' G A2568 37.532 -5.021 59.024 1.00 39.92 C
ATOM 12 O2' G A2568 37.076 -4.687 57.748 1.00 40.01 O
ATOM 13 C1' G A2568 36.406 -5.199 59.993 1.00 39.92 C
ATOM 14 N9 G A2568 35.670 -3.996 60.348 1.00 39.96 N
ATOM 15 C8 G A2568 36.099 -2.813 60.889 1.00 39.97 C
ATOM 16 N7 G A2568 35.122 -1.990 61.031 1.00 40.03 N
ATOM 17 C5 G A2568 34.018 -2.696 60.567 1.00 40.07 C
ATOM 18 C6 G A2568 32.702 -2.285 60.478 1.00 40.15 C
ATOM 19 O6 G A2568 32.301 -1.194 60.812 1.00 40.21 O
ATOM 20 N1 G A2568 31.832 -3.207 60.002 1.00 40.18 N
ATOM 21 C2 G A2568 32.218 -4.432 59.609 1.00 40.13 C
ATOM 22 N2 G A2568 31.190 -5.173 59.139 1.00 40.19 N
ATOM 23 N3 G A2568 33.491 -4.850 59.651 1.00 40.06 N
ATOM 24 C4 G A2568 34.319 -3.925 60.151 1.00 40.03 C
ATOM 25 P A A2569 37.852 -8.561 57.649 1.00 35.47 P
ATOM 26 OP1 A A2569 39.227 -8.202 57.141 1.00 35.46 O
ATOM 27 OP2 A A2569 36.869 -8.905 56.650 1.00 35.56 O
ATOM 28 O5' A A2569 37.925 -9.672 58.750 1.00 35.42 O
TER
ATOM 1 O3' U B2621 38.332 0.591 61.307 1.00 38.54 O
ATOM 2 P C B2622 38.781 -0.504 62.381 1.00 55.35 P
ATOM 3 OP1 C B2622 39.761 0.129 63.267 1.00 55.35 O
ATOM 4 OP2 C B2622 39.197 -1.713 61.627 1.00 55.30 O
ATOM 5 O5' C B2622 37.446 -0.800 63.171 1.00 55.36 O
ATOM 6 C5' C B2622 37.040 0.006 64.249 1.00 55.40 C
ATOM 7 C4' C B2622 35.979 -0.684 65.081 1.00 55.39 C
ATOM 8 O4' C B2622 35.056 -1.425 64.237 1.00 55.39 O
ATOM 9 C3' C B2622 36.467 -1.720 66.088 1.00 55.32 C
ATOM 10 O3' C B2622 36.991 -1.123 67.314 1.00 55.34 O
ATOM 11 C2' C B2622 35.224 -2.638 66.283 1.00 55.32 C
ATOM 12 O2' C B2622 34.495 -2.296 67.452 1.00 55.37 O
ATOM 13 C1' C B2622 34.353 -2.322 65.054 1.00 55.37 C
ATOM 14 N1 C B2622 33.918 -3.529 64.289 1.00 55.35 N
ATOM 15 C2 C B2622 32.546 -3.525 64.134 1.00 55.42 C
ATOM 16 O2 C B2622 31.939 -2.554 64.579 1.00 55.48 O
ATOM 17 N3 C B2622 31.918 -4.534 63.485 1.00 55.43 N
ATOM 18 C4 C B2622 32.596 -5.567 63.041 1.00 55.37 C
ATOM 19 N4 C B2622 31.821 -6.440 62.448 1.00 55.41 N
ATOM 20 C5 C B2622 34.011 -5.690 63.169 1.00 55.30 C
ATOM 21 C6 C B2622 34.605 -4.639 63.800 1.00 55.30 C
ATOM 22 P G B2623 38.471 -1.542 67.928 1.00 87.03 P
ATOM 23 OP1 G B2623 39.441 -1.584 66.798 1.00 87.00 O
ATOM 24 OP2 G B2623 38.278 -2.782 68.777 1.00 87.00 O
ATOM 25 O5' G B2623 38.816 -0.320 68.879 1.00 87.11 O
TER
Atoms:
OP1: (41.478,-9.529,61.981)
OP2: (41.092,-7.488,63.484)
C3': (38.126,-6.405,59.128)
C1': (36.406,-5.199,59.993)
C5': (39.288,-6.468,61.363)
O6: (32.301,-1.194,60.812)
O4': (37.026,-5.754,61.113)
C8: (36.099,-2.813,60.889)
C2: (32.218,-4.432,59.609)
C6: (32.702,-2.285,60.478)
C5: (34.018,-2.696,60.567)
C4: (34.319,-3.925,60.151)
P: (40.593,-8.403,62.425)
C4': (38.029,-6.669,60.621)
C2': (37.532,-5.021,59.024)
O2': (37.076,-4.687,57.748)
N1: (31.832,-3.207,60.002)
N2: (31.190,-5.173,59.139)
N3: (33.491,-4.850,59.651)
N7: (35.122,-1.990,61.031)
N9: (35.670,-3.996,60.348)
O5': (40.150,-7.560,61.179)
O3': (37.274,-7.313,58.450)
OP2: (41.092,-7.488,63.484)
C3': (38.126,-6.405,59.128)
C1': (36.406,-5.199,59.993)
C5': (39.288,-6.468,61.363)
O6: (32.301,-1.194,60.812)
O4': (37.026,-5.754,61.113)
C8: (36.099,-2.813,60.889)
C2: (32.218,-4.432,59.609)
C6: (32.702,-2.285,60.478)
C5: (34.018,-2.696,60.567)
C4: (34.319,-3.925,60.151)
P: (40.593,-8.403,62.425)
C4': (38.029,-6.669,60.621)
C2': (37.532,-5.021,59.024)
O2': (37.076,-4.687,57.748)
N1: (31.832,-3.207,60.002)
N2: (31.190,-5.173,59.139)
N3: (33.491,-4.850,59.651)
N7: (35.122,-1.990,61.031)
N9: (35.670,-3.996,60.348)
O5': (40.150,-7.560,61.179)
O3': (37.274,-7.313,58.450)
C2: (32.546,-3.525,64.134)
OP1: (39.761,0.129,63.267)
OP2: (39.197,-1.713,61.627)
C4: (32.596,-5.567,63.041)
O5': (37.446,-0.800,63.171)
C3': (36.467,-1.720,66.088)
C1': (34.353,-2.322,65.054)
O4': (35.056,-1.425,64.237)
C5': (37.040,0.006,64.249)
P: (38.781,-0.504,62.381)
O2: (31.939,-2.554,64.579)
C4': (35.979,-0.684,65.081)
C2': (35.224,-2.638,66.283)
O2': (34.495,-2.296,67.452)
N1: (33.918,-3.529,64.289)
N3: (31.918,-4.534,63.485)
N4: (31.821,-6.440,62.448)
C6: (34.605,-4.639,63.800)
C5: (34.011,-5.690,63.169)
O3': (36.991,-1.123,67.314)
OP1: (39.761,0.129,63.267)
OP2: (39.197,-1.713,61.627)
C4: (32.596,-5.567,63.041)
O5': (37.446,-0.800,63.171)
C3': (36.467,-1.720,66.088)
C1': (34.353,-2.322,65.054)
O4': (35.056,-1.425,64.237)
C5': (37.040,0.006,64.249)
P: (38.781,-0.504,62.381)
O2: (31.939,-2.554,64.579)
C4': (35.979,-0.684,65.081)
C2': (35.224,-2.638,66.283)
O2': (34.495,-2.296,67.452)
N1: (33.918,-3.529,64.289)
N3: (31.918,-4.534,63.485)
N4: (31.821,-6.440,62.448)
C6: (34.605,-4.639,63.800)
C5: (34.011,-5.690,63.169)
O3': (36.991,-1.123,67.314)
Image (generated by PyMOL):