Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VOD:C4:C6
Extra
PDB:
ATOM 1 O3' U A 3 35.430 -9.954 -2.893 1.00 48.67 O
ATOM 2 P U A 4 35.061 -9.882 -4.461 1.00 47.01 P
ATOM 3 OP1 U A 4 35.721 -8.679 -5.039 1.00 46.83 O
ATOM 4 OP2 U A 4 35.307 -11.218 -5.070 1.00 46.69 O
ATOM 5 O5' U A 4 33.492 -9.616 -4.466 1.00 43.46 O
ATOM 6 C5' U A 4 32.573 -10.619 -4.010 1.00 38.07 C
ATOM 7 C4' U A 4 31.167 -10.226 -4.372 1.00 33.46 C
ATOM 8 O4' U A 4 30.761 -9.107 -3.537 1.00 30.00 O
ATOM 9 C3' U A 4 30.960 -9.803 -5.826 1.00 31.52 C
ATOM 10 O3' U A 4 29.754 -10.374 -6.331 1.00 33.44 O
ATOM 11 C2' U A 4 30.895 -8.273 -5.742 1.00 30.35 C
ATOM 12 O2' U A 4 30.078 -7.676 -6.731 1.00 25.12 O
ATOM 13 C1' U A 4 30.293 -8.055 -4.353 1.00 29.50 C
ATOM 14 N1 U A 4 30.644 -6.777 -3.714 1.00 29.46 N
ATOM 15 C2 U A 4 29.637 -5.826 -3.574 1.00 26.26 C
ATOM 16 O2 U A 4 28.501 -5.988 -3.984 1.00 22.94 O
ATOM 17 N3 U A 4 30.016 -4.673 -2.939 1.00 27.99 N
ATOM 18 C4 U A 4 31.268 -4.365 -2.443 1.00 28.99 C
ATOM 19 O4 U A 4 31.441 -3.285 -1.873 1.00 25.60 O
ATOM 20 C5 U A 4 32.257 -5.386 -2.639 1.00 28.99 C
ATOM 21 C6 U A 4 31.921 -6.527 -3.253 1.00 29.05 C
ATOM 22 P U A 5 29.840 -11.599 -7.379 1.00 35.44 P
ATOM 23 OP1 U A 5 30.400 -11.028 -8.634 1.00 35.76 O
ATOM 24 OP2 U A 5 30.525 -12.737 -6.722 1.00 36.26 O
ATOM 25 O5' U A 5 28.326 -12.032 -7.632 1.00 33.87 O
TER
ATOM 1 O3' U B 5 25.555 -9.597 -5.828 1.00 21.05 O
ATOM 2 P U B 6 26.391 -8.256 -5.506 1.00 22.59 P
ATOM 3 OP1 U B 6 27.234 -7.967 -6.694 1.00 22.22 O
ATOM 4 OP2 U B 6 25.460 -7.223 -4.998 1.00 21.28 O
ATOM 5 O5' U B 6 27.339 -8.691 -4.305 1.00 19.07 O
ATOM 6 C5' U B 6 26.771 -9.076 -3.038 1.00 20.51 C
ATOM 7 C4' U B 6 27.856 -9.278 -2.010 1.00 22.73 C
ATOM 8 O4' U B 6 28.558 -8.045 -1.762 1.00 22.30 O
ATOM 9 C3' U B 6 27.343 -9.644 -0.628 1.00 24.26 C
ATOM 10 O3' U B 6 26.938 -11.009 -0.583 1.00 27.48 O
ATOM 11 C2' U B 6 28.445 -9.188 0.331 1.00 23.26 C
ATOM 12 O2' U B 6 29.333 -10.216 0.688 1.00 26.22 O
ATOM 13 C1' U B 6 29.208 -8.165 -0.516 1.00 24.94 C
ATOM 14 N1 U B 6 29.431 -6.835 0.062 1.00 27.54 N
ATOM 15 C2 U B 6 30.730 -6.530 0.469 1.00 29.54 C
ATOM 16 O2 U B 6 31.658 -7.333 0.407 1.00 26.66 O
ATOM 17 N3 U B 6 30.898 -5.254 0.955 1.00 30.47 N
ATOM 18 C4 U B 6 29.924 -4.282 1.087 1.00 30.04 C
ATOM 19 O4 U B 6 30.238 -3.162 1.484 1.00 31.15 O
ATOM 20 C5 U B 6 28.613 -4.687 0.675 1.00 30.69 C
ATOM 21 C6 U B 6 28.416 -5.916 0.187 1.00 30.03 C
TER
ATOM 2 P U A 4 35.061 -9.882 -4.461 1.00 47.01 P
ATOM 3 OP1 U A 4 35.721 -8.679 -5.039 1.00 46.83 O
ATOM 4 OP2 U A 4 35.307 -11.218 -5.070 1.00 46.69 O
ATOM 5 O5' U A 4 33.492 -9.616 -4.466 1.00 43.46 O
ATOM 6 C5' U A 4 32.573 -10.619 -4.010 1.00 38.07 C
ATOM 7 C4' U A 4 31.167 -10.226 -4.372 1.00 33.46 C
ATOM 8 O4' U A 4 30.761 -9.107 -3.537 1.00 30.00 O
ATOM 9 C3' U A 4 30.960 -9.803 -5.826 1.00 31.52 C
ATOM 10 O3' U A 4 29.754 -10.374 -6.331 1.00 33.44 O
ATOM 11 C2' U A 4 30.895 -8.273 -5.742 1.00 30.35 C
ATOM 12 O2' U A 4 30.078 -7.676 -6.731 1.00 25.12 O
ATOM 13 C1' U A 4 30.293 -8.055 -4.353 1.00 29.50 C
ATOM 14 N1 U A 4 30.644 -6.777 -3.714 1.00 29.46 N
ATOM 15 C2 U A 4 29.637 -5.826 -3.574 1.00 26.26 C
ATOM 16 O2 U A 4 28.501 -5.988 -3.984 1.00 22.94 O
ATOM 17 N3 U A 4 30.016 -4.673 -2.939 1.00 27.99 N
ATOM 18 C4 U A 4 31.268 -4.365 -2.443 1.00 28.99 C
ATOM 19 O4 U A 4 31.441 -3.285 -1.873 1.00 25.60 O
ATOM 20 C5 U A 4 32.257 -5.386 -2.639 1.00 28.99 C
ATOM 21 C6 U A 4 31.921 -6.527 -3.253 1.00 29.05 C
ATOM 22 P U A 5 29.840 -11.599 -7.379 1.00 35.44 P
ATOM 23 OP1 U A 5 30.400 -11.028 -8.634 1.00 35.76 O
ATOM 24 OP2 U A 5 30.525 -12.737 -6.722 1.00 36.26 O
ATOM 25 O5' U A 5 28.326 -12.032 -7.632 1.00 33.87 O
TER
ATOM 1 O3' U B 5 25.555 -9.597 -5.828 1.00 21.05 O
ATOM 2 P U B 6 26.391 -8.256 -5.506 1.00 22.59 P
ATOM 3 OP1 U B 6 27.234 -7.967 -6.694 1.00 22.22 O
ATOM 4 OP2 U B 6 25.460 -7.223 -4.998 1.00 21.28 O
ATOM 5 O5' U B 6 27.339 -8.691 -4.305 1.00 19.07 O
ATOM 6 C5' U B 6 26.771 -9.076 -3.038 1.00 20.51 C
ATOM 7 C4' U B 6 27.856 -9.278 -2.010 1.00 22.73 C
ATOM 8 O4' U B 6 28.558 -8.045 -1.762 1.00 22.30 O
ATOM 9 C3' U B 6 27.343 -9.644 -0.628 1.00 24.26 C
ATOM 10 O3' U B 6 26.938 -11.009 -0.583 1.00 27.48 O
ATOM 11 C2' U B 6 28.445 -9.188 0.331 1.00 23.26 C
ATOM 12 O2' U B 6 29.333 -10.216 0.688 1.00 26.22 O
ATOM 13 C1' U B 6 29.208 -8.165 -0.516 1.00 24.94 C
ATOM 14 N1 U B 6 29.431 -6.835 0.062 1.00 27.54 N
ATOM 15 C2 U B 6 30.730 -6.530 0.469 1.00 29.54 C
ATOM 16 O2 U B 6 31.658 -7.333 0.407 1.00 26.66 O
ATOM 17 N3 U B 6 30.898 -5.254 0.955 1.00 30.47 N
ATOM 18 C4 U B 6 29.924 -4.282 1.087 1.00 30.04 C
ATOM 19 O4 U B 6 30.238 -3.162 1.484 1.00 31.15 O
ATOM 20 C5 U B 6 28.613 -4.687 0.675 1.00 30.69 C
ATOM 21 C6 U B 6 28.416 -5.916 0.187 1.00 30.03 C
TER
Atoms:
C4: (31.268,-4.365,-2.443)
N3: (30.016,-4.673,-2.939)
OP1: (35.721,-8.679,-5.039)
OP2: (35.307,-11.218,-5.070)
C2: (29.637,-5.826,-3.574)
C1': (30.293,-8.055,-4.353)
C3': (30.960,-9.803,-5.826)
O5': (33.492,-9.616,-4.466)
O4': (30.761,-9.107,-3.537)
C5': (32.573,-10.619,-4.010)
P: (35.061,-9.882,-4.461)
C4': (31.167,-10.226,-4.372)
C2': (30.895,-8.273,-5.742)
O2': (30.078,-7.676,-6.731)
N1: (30.644,-6.777,-3.714)
O4: (31.441,-3.285,-1.873)
O2: (28.501,-5.988,-3.984)
C6: (31.921,-6.527,-3.253)
C5: (32.257,-5.386,-2.639)
O3': (29.754,-10.374,-6.331)
N3: (30.016,-4.673,-2.939)
OP1: (35.721,-8.679,-5.039)
OP2: (35.307,-11.218,-5.070)
C2: (29.637,-5.826,-3.574)
C1': (30.293,-8.055,-4.353)
C3': (30.960,-9.803,-5.826)
O5': (33.492,-9.616,-4.466)
O4': (30.761,-9.107,-3.537)
C5': (32.573,-10.619,-4.010)
P: (35.061,-9.882,-4.461)
C4': (31.167,-10.226,-4.372)
C2': (30.895,-8.273,-5.742)
O2': (30.078,-7.676,-6.731)
N1: (30.644,-6.777,-3.714)
O4: (31.441,-3.285,-1.873)
O2: (28.501,-5.988,-3.984)
C6: (31.921,-6.527,-3.253)
C5: (32.257,-5.386,-2.639)
O3': (29.754,-10.374,-6.331)
C4: (29.924,-4.282,1.087)
N3: (30.898,-5.254,0.955)
OP1: (27.234,-7.967,-6.694)
OP2: (25.460,-7.223,-4.998)
C2: (30.730,-6.530,0.469)
C1': (29.208,-8.165,-0.516)
C3': (27.343,-9.644,-0.628)
O5': (27.339,-8.691,-4.305)
O4': (28.558,-8.045,-1.762)
C5': (26.771,-9.076,-3.038)
P: (26.391,-8.256,-5.506)
C4': (27.856,-9.278,-2.010)
C2': (28.445,-9.188,0.331)
O2': (29.333,-10.216,0.688)
N1: (29.431,-6.835,0.062)
O4: (30.238,-3.162,1.484)
O2: (31.658,-7.333,0.407)
C6: (28.416,-5.916,0.187)
C5: (28.613,-4.687,0.675)
O3': (26.938,-11.009,-0.583)
N3: (30.898,-5.254,0.955)
OP1: (27.234,-7.967,-6.694)
OP2: (25.460,-7.223,-4.998)
C2: (30.730,-6.530,0.469)
C1': (29.208,-8.165,-0.516)
C3': (27.343,-9.644,-0.628)
O5': (27.339,-8.691,-4.305)
O4': (28.558,-8.045,-1.762)
C5': (26.771,-9.076,-3.038)
P: (26.391,-8.256,-5.506)
C4': (27.856,-9.278,-2.010)
C2': (28.445,-9.188,0.331)
O2': (29.333,-10.216,0.688)
N1: (29.431,-6.835,0.062)
O4: (30.238,-3.162,1.484)
O2: (31.658,-7.333,0.407)
C6: (28.416,-5.916,0.187)
C5: (28.613,-4.687,0.675)
O3': (26.938,-11.009,-0.583)
Image (generated by PyMOL):