Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VOD:D4:D6
Extra
PDB:
ATOM 1 O3' U A 3 -14.347 -24.953 -43.930 1.00 36.41 O
ATOM 2 P U A 4 -12.884 -24.990 -44.627 1.00 37.15 P
ATOM 3 OP1 U A 4 -12.820 -26.112 -45.596 1.00 35.41 O
ATOM 4 OP2 U A 4 -12.591 -23.603 -45.086 1.00 36.35 O
ATOM 5 O5' U A 4 -11.872 -25.344 -43.447 1.00 34.33 O
ATOM 6 C5' U A 4 -11.605 -24.398 -42.400 1.00 32.81 C
ATOM 7 C4' U A 4 -10.409 -24.839 -41.596 1.00 29.63 C
ATOM 8 O4' U A 4 -10.771 -25.960 -40.742 1.00 27.32 O
ATOM 9 C3' U A 4 -9.203 -25.275 -42.422 1.00 30.15 C
ATOM 10 O3' U A 4 -8.014 -24.726 -41.857 1.00 31.76 O
ATOM 11 C2' U A 4 -9.250 -26.803 -42.335 1.00 27.74 C
ATOM 12 O2' U A 4 -7.978 -27.418 -42.415 1.00 26.51 O
ATOM 13 C1' U A 4 -9.871 -27.022 -40.954 1.00 26.89 C
ATOM 14 N1 U A 4 -10.605 -28.286 -40.797 1.00 25.88 N
ATOM 15 C2 U A 4 -10.072 -29.236 -39.934 1.00 25.70 C
ATOM 16 O2 U A 4 -9.014 -29.078 -39.328 1.00 21.33 O
ATOM 17 N3 U A 4 -10.815 -30.383 -39.810 1.00 25.37 N
ATOM 18 C4 U A 4 -12.003 -30.682 -40.450 1.00 27.55 C
ATOM 19 O4 U A 4 -12.534 -31.777 -40.255 1.00 24.88 O
ATOM 20 C5 U A 4 -12.483 -29.658 -41.331 1.00 27.02 C
ATOM 21 C6 U A 4 -11.786 -28.524 -41.471 1.00 27.62 C
ATOM 22 P U A 5 -7.345 -23.428 -42.540 1.00 34.04 P
ATOM 23 OP1 U A 5 -6.788 -23.917 -43.829 1.00 34.32 O
ATOM 24 OP2 U A 5 -8.340 -22.320 -42.539 1.00 32.48 O
ATOM 25 O5' U A 5 -6.162 -23.000 -41.553 1.00 31.28 O
TER
ATOM 1 O3' U B 5 -5.700 -25.422 -38.278 1.00 20.30 O
ATOM 2 P U B 6 -6.466 -26.762 -38.727 1.00 19.28 P
ATOM 3 OP1 U B 6 -6.118 -27.028 -40.150 1.00 22.37 O
ATOM 4 OP2 U B 6 -6.186 -27.794 -37.703 1.00 20.27 O
ATOM 5 O5' U B 6 -8.006 -26.366 -38.651 1.00 20.11 O
ATOM 6 C5' U B 6 -8.593 -25.930 -37.411 1.00 20.47 C
ATOM 7 C4' U B 6 -10.086 -25.739 -37.567 1.00 20.17 C
ATOM 8 O4' U B 6 -10.734 -26.994 -37.845 1.00 17.75 O
ATOM 9 C3' U B 6 -10.806 -25.284 -36.309 1.00 20.60 C
ATOM 10 O3' U B 6 -10.585 -23.891 -36.068 1.00 23.27 O
ATOM 11 C2' U B 6 -12.252 -25.758 -36.494 1.00 22.38 C
ATOM 12 O2' U B 6 -13.115 -24.744 -36.959 1.00 26.42 O
ATOM 13 C1' U B 6 -12.106 -26.825 -37.585 1.00 20.85 C
ATOM 14 N1 U B 6 -12.739 -28.136 -37.383 1.00 24.34 N
ATOM 15 C2 U B 6 -13.903 -28.391 -38.099 1.00 26.07 C
ATOM 16 O2 U B 6 -14.434 -27.562 -38.830 1.00 26.27 O
ATOM 17 N3 U B 6 -14.422 -29.650 -37.927 1.00 27.35 N
ATOM 18 C4 U B 6 -13.914 -30.657 -37.127 1.00 27.54 C
ATOM 19 O4 U B 6 -14.457 -31.764 -37.133 1.00 26.98 O
ATOM 20 C5 U B 6 -12.729 -30.305 -36.398 1.00 24.53 C
ATOM 21 C6 U B 6 -12.198 -29.089 -36.544 1.00 24.37 C
TER
ATOM 2 P U A 4 -12.884 -24.990 -44.627 1.00 37.15 P
ATOM 3 OP1 U A 4 -12.820 -26.112 -45.596 1.00 35.41 O
ATOM 4 OP2 U A 4 -12.591 -23.603 -45.086 1.00 36.35 O
ATOM 5 O5' U A 4 -11.872 -25.344 -43.447 1.00 34.33 O
ATOM 6 C5' U A 4 -11.605 -24.398 -42.400 1.00 32.81 C
ATOM 7 C4' U A 4 -10.409 -24.839 -41.596 1.00 29.63 C
ATOM 8 O4' U A 4 -10.771 -25.960 -40.742 1.00 27.32 O
ATOM 9 C3' U A 4 -9.203 -25.275 -42.422 1.00 30.15 C
ATOM 10 O3' U A 4 -8.014 -24.726 -41.857 1.00 31.76 O
ATOM 11 C2' U A 4 -9.250 -26.803 -42.335 1.00 27.74 C
ATOM 12 O2' U A 4 -7.978 -27.418 -42.415 1.00 26.51 O
ATOM 13 C1' U A 4 -9.871 -27.022 -40.954 1.00 26.89 C
ATOM 14 N1 U A 4 -10.605 -28.286 -40.797 1.00 25.88 N
ATOM 15 C2 U A 4 -10.072 -29.236 -39.934 1.00 25.70 C
ATOM 16 O2 U A 4 -9.014 -29.078 -39.328 1.00 21.33 O
ATOM 17 N3 U A 4 -10.815 -30.383 -39.810 1.00 25.37 N
ATOM 18 C4 U A 4 -12.003 -30.682 -40.450 1.00 27.55 C
ATOM 19 O4 U A 4 -12.534 -31.777 -40.255 1.00 24.88 O
ATOM 20 C5 U A 4 -12.483 -29.658 -41.331 1.00 27.02 C
ATOM 21 C6 U A 4 -11.786 -28.524 -41.471 1.00 27.62 C
ATOM 22 P U A 5 -7.345 -23.428 -42.540 1.00 34.04 P
ATOM 23 OP1 U A 5 -6.788 -23.917 -43.829 1.00 34.32 O
ATOM 24 OP2 U A 5 -8.340 -22.320 -42.539 1.00 32.48 O
ATOM 25 O5' U A 5 -6.162 -23.000 -41.553 1.00 31.28 O
TER
ATOM 1 O3' U B 5 -5.700 -25.422 -38.278 1.00 20.30 O
ATOM 2 P U B 6 -6.466 -26.762 -38.727 1.00 19.28 P
ATOM 3 OP1 U B 6 -6.118 -27.028 -40.150 1.00 22.37 O
ATOM 4 OP2 U B 6 -6.186 -27.794 -37.703 1.00 20.27 O
ATOM 5 O5' U B 6 -8.006 -26.366 -38.651 1.00 20.11 O
ATOM 6 C5' U B 6 -8.593 -25.930 -37.411 1.00 20.47 C
ATOM 7 C4' U B 6 -10.086 -25.739 -37.567 1.00 20.17 C
ATOM 8 O4' U B 6 -10.734 -26.994 -37.845 1.00 17.75 O
ATOM 9 C3' U B 6 -10.806 -25.284 -36.309 1.00 20.60 C
ATOM 10 O3' U B 6 -10.585 -23.891 -36.068 1.00 23.27 O
ATOM 11 C2' U B 6 -12.252 -25.758 -36.494 1.00 22.38 C
ATOM 12 O2' U B 6 -13.115 -24.744 -36.959 1.00 26.42 O
ATOM 13 C1' U B 6 -12.106 -26.825 -37.585 1.00 20.85 C
ATOM 14 N1 U B 6 -12.739 -28.136 -37.383 1.00 24.34 N
ATOM 15 C2 U B 6 -13.903 -28.391 -38.099 1.00 26.07 C
ATOM 16 O2 U B 6 -14.434 -27.562 -38.830 1.00 26.27 O
ATOM 17 N3 U B 6 -14.422 -29.650 -37.927 1.00 27.35 N
ATOM 18 C4 U B 6 -13.914 -30.657 -37.127 1.00 27.54 C
ATOM 19 O4 U B 6 -14.457 -31.764 -37.133 1.00 26.98 O
ATOM 20 C5 U B 6 -12.729 -30.305 -36.398 1.00 24.53 C
ATOM 21 C6 U B 6 -12.198 -29.089 -36.544 1.00 24.37 C
TER
Atoms:
C4: (-12.003,-30.682,-40.450)
N3: (-10.815,-30.383,-39.810)
OP1: (-12.820,-26.112,-45.596)
OP2: (-12.591,-23.603,-45.086)
C2: (-10.072,-29.236,-39.934)
C1': (-9.871,-27.022,-40.954)
C3': (-9.203,-25.275,-42.422)
O5': (-11.872,-25.344,-43.447)
O4': (-10.771,-25.960,-40.742)
C5': (-11.605,-24.398,-42.400)
P: (-12.884,-24.990,-44.627)
C4': (-10.409,-24.839,-41.596)
C2': (-9.250,-26.803,-42.335)
O2': (-7.978,-27.418,-42.415)
N1: (-10.605,-28.286,-40.797)
O4: (-12.534,-31.777,-40.255)
O2: (-9.014,-29.078,-39.328)
C6: (-11.786,-28.524,-41.471)
C5: (-12.483,-29.658,-41.331)
O3': (-8.014,-24.726,-41.857)
N3: (-10.815,-30.383,-39.810)
OP1: (-12.820,-26.112,-45.596)
OP2: (-12.591,-23.603,-45.086)
C2: (-10.072,-29.236,-39.934)
C1': (-9.871,-27.022,-40.954)
C3': (-9.203,-25.275,-42.422)
O5': (-11.872,-25.344,-43.447)
O4': (-10.771,-25.960,-40.742)
C5': (-11.605,-24.398,-42.400)
P: (-12.884,-24.990,-44.627)
C4': (-10.409,-24.839,-41.596)
C2': (-9.250,-26.803,-42.335)
O2': (-7.978,-27.418,-42.415)
N1: (-10.605,-28.286,-40.797)
O4: (-12.534,-31.777,-40.255)
O2: (-9.014,-29.078,-39.328)
C6: (-11.786,-28.524,-41.471)
C5: (-12.483,-29.658,-41.331)
O3': (-8.014,-24.726,-41.857)
C4: (-13.914,-30.657,-37.127)
N3: (-14.422,-29.650,-37.927)
OP1: (-6.118,-27.028,-40.150)
OP2: (-6.186,-27.794,-37.703)
C2: (-13.903,-28.391,-38.099)
C1': (-12.106,-26.825,-37.585)
C3': (-10.806,-25.284,-36.309)
O5': (-8.006,-26.366,-38.651)
O4': (-10.734,-26.994,-37.845)
C5': (-8.593,-25.930,-37.411)
P: (-6.466,-26.762,-38.727)
C4': (-10.086,-25.739,-37.567)
C2': (-12.252,-25.758,-36.494)
O2': (-13.115,-24.744,-36.959)
N1: (-12.739,-28.136,-37.383)
O4: (-14.457,-31.764,-37.133)
O2: (-14.434,-27.562,-38.830)
C6: (-12.198,-29.089,-36.544)
C5: (-12.729,-30.305,-36.398)
O3': (-10.585,-23.891,-36.068)
N3: (-14.422,-29.650,-37.927)
OP1: (-6.118,-27.028,-40.150)
OP2: (-6.186,-27.794,-37.703)
C2: (-13.903,-28.391,-38.099)
C1': (-12.106,-26.825,-37.585)
C3': (-10.806,-25.284,-36.309)
O5': (-8.006,-26.366,-38.651)
O4': (-10.734,-26.994,-37.845)
C5': (-8.593,-25.930,-37.411)
P: (-6.466,-26.762,-38.727)
C4': (-10.086,-25.739,-37.567)
C2': (-12.252,-25.758,-36.494)
O2': (-13.115,-24.744,-36.959)
N1: (-12.739,-28.136,-37.383)
O4: (-14.457,-31.764,-37.133)
O2: (-14.434,-27.562,-38.830)
C6: (-12.198,-29.089,-36.544)
C5: (-12.729,-30.305,-36.398)
O3': (-10.585,-23.891,-36.068)
Image (generated by PyMOL):