Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12668:12687
Extra
PDB:
ATOM 1 O3' U A2667 10.151 26.872 43.073 1.00 42.74 O
ATOM 2 P U A2668 10.375 25.822 44.276 1.00 48.10 P
ATOM 3 OP1 U A2668 11.750 25.355 44.222 1.00 47.77 O
ATOM 4 OP2 U A2668 9.278 24.823 44.173 1.00 48.09 O
ATOM 5 O5' U A2668 10.158 26.743 45.569 1.00 48.16 O
ATOM 6 C5' U A2668 10.552 28.126 45.583 1.00 48.41 C
ATOM 7 C4' U A2668 9.385 29.098 45.821 1.00 48.82 C
ATOM 8 O4' U A2668 8.422 29.012 44.731 1.00 49.12 O
ATOM 9 C3' U A2668 8.517 28.875 47.043 1.00 48.76 C
ATOM 10 O3' U A2668 9.069 29.304 48.267 1.00 48.61 O
ATOM 11 C2' U A2668 7.241 29.617 46.679 1.00 49.22 C
ATOM 12 O2' U A2668 7.399 31.009 46.836 1.00 49.52 O
ATOM 13 C1' U A2668 7.123 29.317 45.210 1.00 49.37 C
ATOM 14 N1 U A2668 6.242 28.182 45.003 1.00 49.30 N
ATOM 15 C2 U A2668 4.879 28.414 45.013 1.00 49.62 C
ATOM 16 O2 U A2668 4.433 29.549 45.114 1.00 49.97 O
ATOM 17 N3 U A2668 4.056 27.316 44.837 1.00 49.56 N
ATOM 18 C4 U A2668 4.513 26.008 44.687 1.00 49.19 C
ATOM 19 O4 U A2668 3.766 25.020 44.552 1.00 49.14 O
ATOM 20 C5 U A2668 5.931 25.900 44.756 1.00 48.87 C
ATOM 21 C6 U A2668 6.737 26.948 44.903 1.00 48.93 C
ATOM 22 P G A2669 8.367 28.810 49.633 1.00 42.48 P
ATOM 23 OP1 G A2669 9.228 29.237 50.769 1.00 42.30 O
ATOM 24 OP2 G A2669 8.058 27.367 49.473 1.00 42.21 O
ATOM 25 O5' G A2669 7.006 29.613 49.653 1.00 42.92 O
TER
ATOM 1 O3' A B2686 3.764 24.442 36.232 1.00 43.88 O
ATOM 2 P U B2687 2.286 24.263 36.786 1.00 50.39 P
ATOM 3 OP1 U B2687 1.805 22.923 36.332 1.00 50.31 O
ATOM 4 OP2 U B2687 1.557 25.448 36.398 1.00 50.88 O
ATOM 5 O5' U B2687 2.481 24.262 38.354 1.00 50.04 O
ATOM 6 C5' U B2687 3.080 23.158 38.996 1.00 49.56 C
ATOM 7 C4' U B2687 4.534 23.402 39.327 1.00 49.25 C
ATOM 8 O4' U B2687 4.798 24.820 39.344 1.00 49.49 O
ATOM 9 C3' U B2687 4.948 22.871 40.698 1.00 48.81 C
ATOM 10 O3' U B2687 6.246 22.336 40.654 1.00 48.46 O
ATOM 11 C2' U B2687 4.989 24.099 41.561 1.00 48.91 C
ATOM 12 O2' U B2687 5.908 23.989 42.623 1.00 48.53 O
ATOM 13 C1' U B2687 5.432 25.147 40.559 1.00 49.22 C
ATOM 14 N1 U B2687 5.104 26.539 40.940 1.00 49.53 N
ATOM 15 C2 U B2687 3.889 26.893 41.474 1.00 49.77 C
ATOM 16 O2 U B2687 2.928 26.143 41.643 1.00 49.77 O
ATOM 17 N3 U B2687 3.800 28.236 41.763 1.00 50.05 N
ATOM 18 C4 U B2687 4.715 29.235 41.637 1.00 50.12 C
ATOM 19 O4 U B2687 4.425 30.374 41.997 1.00 50.41 O
ATOM 20 C5 U B2687 5.950 28.771 41.122 1.00 49.85 C
ATOM 21 C6 U B2687 6.089 27.486 40.810 1.00 49.57 C
ATOM 22 P A B2688 6.515 20.954 39.918 1.00 44.31 P
ATOM 23 OP1 A B2688 5.304 20.594 39.154 1.00 44.61 O
ATOM 24 OP2 A B2688 7.025 20.004 40.930 1.00 43.85 O
ATOM 25 O5' A B2688 7.639 21.396 38.912 1.00 44.36 O
TER
ATOM 2 P U A2668 10.375 25.822 44.276 1.00 48.10 P
ATOM 3 OP1 U A2668 11.750 25.355 44.222 1.00 47.77 O
ATOM 4 OP2 U A2668 9.278 24.823 44.173 1.00 48.09 O
ATOM 5 O5' U A2668 10.158 26.743 45.569 1.00 48.16 O
ATOM 6 C5' U A2668 10.552 28.126 45.583 1.00 48.41 C
ATOM 7 C4' U A2668 9.385 29.098 45.821 1.00 48.82 C
ATOM 8 O4' U A2668 8.422 29.012 44.731 1.00 49.12 O
ATOM 9 C3' U A2668 8.517 28.875 47.043 1.00 48.76 C
ATOM 10 O3' U A2668 9.069 29.304 48.267 1.00 48.61 O
ATOM 11 C2' U A2668 7.241 29.617 46.679 1.00 49.22 C
ATOM 12 O2' U A2668 7.399 31.009 46.836 1.00 49.52 O
ATOM 13 C1' U A2668 7.123 29.317 45.210 1.00 49.37 C
ATOM 14 N1 U A2668 6.242 28.182 45.003 1.00 49.30 N
ATOM 15 C2 U A2668 4.879 28.414 45.013 1.00 49.62 C
ATOM 16 O2 U A2668 4.433 29.549 45.114 1.00 49.97 O
ATOM 17 N3 U A2668 4.056 27.316 44.837 1.00 49.56 N
ATOM 18 C4 U A2668 4.513 26.008 44.687 1.00 49.19 C
ATOM 19 O4 U A2668 3.766 25.020 44.552 1.00 49.14 O
ATOM 20 C5 U A2668 5.931 25.900 44.756 1.00 48.87 C
ATOM 21 C6 U A2668 6.737 26.948 44.903 1.00 48.93 C
ATOM 22 P G A2669 8.367 28.810 49.633 1.00 42.48 P
ATOM 23 OP1 G A2669 9.228 29.237 50.769 1.00 42.30 O
ATOM 24 OP2 G A2669 8.058 27.367 49.473 1.00 42.21 O
ATOM 25 O5' G A2669 7.006 29.613 49.653 1.00 42.92 O
TER
ATOM 1 O3' A B2686 3.764 24.442 36.232 1.00 43.88 O
ATOM 2 P U B2687 2.286 24.263 36.786 1.00 50.39 P
ATOM 3 OP1 U B2687 1.805 22.923 36.332 1.00 50.31 O
ATOM 4 OP2 U B2687 1.557 25.448 36.398 1.00 50.88 O
ATOM 5 O5' U B2687 2.481 24.262 38.354 1.00 50.04 O
ATOM 6 C5' U B2687 3.080 23.158 38.996 1.00 49.56 C
ATOM 7 C4' U B2687 4.534 23.402 39.327 1.00 49.25 C
ATOM 8 O4' U B2687 4.798 24.820 39.344 1.00 49.49 O
ATOM 9 C3' U B2687 4.948 22.871 40.698 1.00 48.81 C
ATOM 10 O3' U B2687 6.246 22.336 40.654 1.00 48.46 O
ATOM 11 C2' U B2687 4.989 24.099 41.561 1.00 48.91 C
ATOM 12 O2' U B2687 5.908 23.989 42.623 1.00 48.53 O
ATOM 13 C1' U B2687 5.432 25.147 40.559 1.00 49.22 C
ATOM 14 N1 U B2687 5.104 26.539 40.940 1.00 49.53 N
ATOM 15 C2 U B2687 3.889 26.893 41.474 1.00 49.77 C
ATOM 16 O2 U B2687 2.928 26.143 41.643 1.00 49.77 O
ATOM 17 N3 U B2687 3.800 28.236 41.763 1.00 50.05 N
ATOM 18 C4 U B2687 4.715 29.235 41.637 1.00 50.12 C
ATOM 19 O4 U B2687 4.425 30.374 41.997 1.00 50.41 O
ATOM 20 C5 U B2687 5.950 28.771 41.122 1.00 49.85 C
ATOM 21 C6 U B2687 6.089 27.486 40.810 1.00 49.57 C
ATOM 22 P A B2688 6.515 20.954 39.918 1.00 44.31 P
ATOM 23 OP1 A B2688 5.304 20.594 39.154 1.00 44.61 O
ATOM 24 OP2 A B2688 7.025 20.004 40.930 1.00 43.85 O
ATOM 25 O5' A B2688 7.639 21.396 38.912 1.00 44.36 O
TER
Atoms:
C4: (4.513,26.008,44.687)
N3: (4.056,27.316,44.837)
OP1: (11.750,25.355,44.222)
OP2: (9.278,24.823,44.173)
C2: (4.879,28.414,45.013)
C1': (7.123,29.317,45.210)
C3': (8.517,28.875,47.043)
O5': (10.158,26.743,45.569)
O4': (8.422,29.012,44.731)
C5': (10.552,28.126,45.583)
P: (10.375,25.822,44.276)
C4': (9.385,29.098,45.821)
C2': (7.241,29.617,46.679)
O2': (7.399,31.009,46.836)
N1: (6.242,28.182,45.003)
O4: (3.766,25.020,44.552)
O2: (4.433,29.549,45.114)
C6: (6.737,26.948,44.903)
C5: (5.931,25.900,44.756)
O3': (9.069,29.304,48.267)
N3: (4.056,27.316,44.837)
OP1: (11.750,25.355,44.222)
OP2: (9.278,24.823,44.173)
C2: (4.879,28.414,45.013)
C1': (7.123,29.317,45.210)
C3': (8.517,28.875,47.043)
O5': (10.158,26.743,45.569)
O4': (8.422,29.012,44.731)
C5': (10.552,28.126,45.583)
P: (10.375,25.822,44.276)
C4': (9.385,29.098,45.821)
C2': (7.241,29.617,46.679)
O2': (7.399,31.009,46.836)
N1: (6.242,28.182,45.003)
O4: (3.766,25.020,44.552)
O2: (4.433,29.549,45.114)
C6: (6.737,26.948,44.903)
C5: (5.931,25.900,44.756)
O3': (9.069,29.304,48.267)
C4: (4.715,29.235,41.637)
N3: (3.800,28.236,41.763)
OP1: (1.805,22.923,36.332)
OP2: (1.557,25.448,36.398)
C2: (3.889,26.893,41.474)
C1': (5.432,25.147,40.559)
C3': (4.948,22.871,40.698)
O5': (2.481,24.262,38.354)
O4': (4.798,24.820,39.344)
C5': (3.080,23.158,38.996)
P: (2.286,24.263,36.786)
C4': (4.534,23.402,39.327)
C2': (4.989,24.099,41.561)
O2': (5.908,23.989,42.623)
N1: (5.104,26.539,40.940)
O4: (4.425,30.374,41.997)
O2: (2.928,26.143,41.643)
C6: (6.089,27.486,40.810)
C5: (5.950,28.771,41.122)
O3': (6.246,22.336,40.654)
N3: (3.800,28.236,41.763)
OP1: (1.805,22.923,36.332)
OP2: (1.557,25.448,36.398)
C2: (3.889,26.893,41.474)
C1': (5.432,25.147,40.559)
C3': (4.948,22.871,40.698)
O5': (2.481,24.262,38.354)
O4': (4.798,24.820,39.344)
C5': (3.080,23.158,38.996)
P: (2.286,24.263,36.786)
C4': (4.534,23.402,39.327)
C2': (4.989,24.099,41.561)
O2': (5.908,23.989,42.623)
N1: (5.104,26.539,40.940)
O4: (4.425,30.374,41.997)
O2: (2.928,26.143,41.643)
C6: (6.089,27.486,40.810)
C5: (5.950,28.771,41.122)
O3': (6.246,22.336,40.654)
Image (generated by PyMOL):