Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1804:1840
Extra
PDB:
ATOM 1 O3' G A 803 -5.798 22.939 106.679 1.00 52.22 O
ATOM 2 P G A 804 -5.594 21.350 106.731 1.00 49.01 P
ATOM 3 OP1 G A 804 -6.373 20.773 105.628 1.00 48.79 O
ATOM 4 OP2 G A 804 -5.903 20.921 108.117 1.00 49.31 O
ATOM 5 O5' G A 804 -4.038 21.161 106.447 1.00 48.59 O
ATOM 6 C5' G A 804 -3.410 21.712 105.301 1.00 48.33 C
ATOM 7 C4' G A 804 -1.915 21.466 105.330 1.00 48.00 C
ATOM 8 O4' G A 804 -1.631 20.193 105.942 1.00 47.82 O
ATOM 9 C3' G A 804 -1.245 21.412 103.982 1.00 47.56 C
ATOM 10 O3' G A 804 -0.802 22.663 103.596 1.00 47.67 O
ATOM 11 C2' G A 804 -0.102 20.431 104.140 1.00 47.18 C
ATOM 12 O2' G A 804 1.095 21.114 104.446 1.00 47.19 O
ATOM 13 C1' G A 804 -0.514 19.589 105.339 1.00 47.35 C
ATOM 14 N9 G A 804 -0.859 18.202 104.956 1.00 47.04 N
ATOM 15 C8 G A 804 -0.394 17.067 105.579 1.00 46.88 C
ATOM 16 N7 G A 804 -0.871 15.957 105.033 1.00 46.63 N
ATOM 17 C5 G A 804 -1.703 16.370 103.998 1.00 46.63 C
ATOM 18 C6 G A 804 -2.473 15.619 103.066 1.00 46.43 C
ATOM 19 O6 G A 804 -2.596 14.399 102.985 1.00 46.22 O
ATOM 20 N1 G A 804 -3.116 16.451 102.160 1.00 46.52 N
ATOM 21 C2 G A 804 -3.054 17.817 102.187 1.00 46.77 C
ATOM 22 N2 G A 804 -3.732 18.511 101.296 1.00 46.86 N
ATOM 23 N3 G A 804 -2.371 18.514 103.045 1.00 46.96 N
ATOM 24 C4 G A 804 -1.702 17.750 103.932 1.00 46.88 C
ATOM 25 P C A 805 -1.410 23.336 102.317 1.00 42.80 P
ATOM 26 OP1 C A 805 -1.849 22.223 101.428 1.00 42.45 O
ATOM 27 OP2 C A 805 -0.397 24.297 101.807 1.00 42.74 O
ATOM 28 O5' C A 805 -2.644 24.160 102.929 1.00 43.36 O
TER
ATOM 1 O3' A B 839 2.367 19.937 107.993 1.00 61.17 O
ATOM 2 P A B 840 2.294 18.583 108.879 1.00 43.53 P
ATOM 3 OP1 A B 840 0.885 18.171 108.912 1.00 43.69 O
ATOM 4 OP2 A B 840 2.998 18.827 110.159 1.00 43.80 O
ATOM 5 O5' A B 840 3.128 17.556 108.009 1.00 42.97 O
ATOM 6 C5' A B 840 3.707 16.416 108.621 1.00 42.82 C
ATOM 7 C4' A B 840 4.780 15.810 107.770 1.00 42.33 C
ATOM 8 O4' A B 840 4.181 14.854 106.868 1.00 42.03 O
ATOM 9 C3' A B 840 5.579 16.801 106.914 1.00 42.18 C
ATOM 10 O3' A B 840 6.990 16.696 107.207 1.00 42.03 O
ATOM 11 C2' A B 840 5.325 16.351 105.466 1.00 41.79 C
ATOM 12 O2' A B 840 6.504 16.387 104.633 1.00 41.43 O
ATOM 13 C1' A B 840 4.830 14.915 105.637 1.00 41.65 C
ATOM 14 N9 A B 840 3.936 14.446 104.564 1.00 41.46 N
ATOM 15 C8 A B 840 3.025 15.135 103.824 1.00 41.56 C
ATOM 16 N7 A B 840 2.460 14.441 102.859 1.00 41.32 N
ATOM 17 C5 A B 840 3.065 13.194 102.941 1.00 41.03 C
ATOM 18 C6 A B 840 2.933 11.997 102.217 1.00 40.70 C
ATOM 19 N6 A B 840 2.099 11.810 101.208 1.00 40.60 N
ATOM 20 N1 A B 840 3.699 10.960 102.538 1.00 40.49 N
ATOM 21 C2 A B 840 4.528 11.086 103.537 1.00 40.59 C
ATOM 22 N3 A B 840 4.764 12.138 104.295 1.00 40.89 N
ATOM 23 C4 A B 840 3.986 13.191 103.958 1.00 41.10 C
ATOM 24 P U B 841 7.705 17.751 108.195 1.00 42.13 P
ATOM 25 OP1 U B 841 8.676 16.984 108.997 1.00 42.06 O
ATOM 26 OP2 U B 841 6.639 18.500 108.912 1.00 42.61 O
ATOM 27 O5' U B 841 8.480 18.736 107.198 1.00 41.97 O
TER
ATOM 2 P G A 804 -5.594 21.350 106.731 1.00 49.01 P
ATOM 3 OP1 G A 804 -6.373 20.773 105.628 1.00 48.79 O
ATOM 4 OP2 G A 804 -5.903 20.921 108.117 1.00 49.31 O
ATOM 5 O5' G A 804 -4.038 21.161 106.447 1.00 48.59 O
ATOM 6 C5' G A 804 -3.410 21.712 105.301 1.00 48.33 C
ATOM 7 C4' G A 804 -1.915 21.466 105.330 1.00 48.00 C
ATOM 8 O4' G A 804 -1.631 20.193 105.942 1.00 47.82 O
ATOM 9 C3' G A 804 -1.245 21.412 103.982 1.00 47.56 C
ATOM 10 O3' G A 804 -0.802 22.663 103.596 1.00 47.67 O
ATOM 11 C2' G A 804 -0.102 20.431 104.140 1.00 47.18 C
ATOM 12 O2' G A 804 1.095 21.114 104.446 1.00 47.19 O
ATOM 13 C1' G A 804 -0.514 19.589 105.339 1.00 47.35 C
ATOM 14 N9 G A 804 -0.859 18.202 104.956 1.00 47.04 N
ATOM 15 C8 G A 804 -0.394 17.067 105.579 1.00 46.88 C
ATOM 16 N7 G A 804 -0.871 15.957 105.033 1.00 46.63 N
ATOM 17 C5 G A 804 -1.703 16.370 103.998 1.00 46.63 C
ATOM 18 C6 G A 804 -2.473 15.619 103.066 1.00 46.43 C
ATOM 19 O6 G A 804 -2.596 14.399 102.985 1.00 46.22 O
ATOM 20 N1 G A 804 -3.116 16.451 102.160 1.00 46.52 N
ATOM 21 C2 G A 804 -3.054 17.817 102.187 1.00 46.77 C
ATOM 22 N2 G A 804 -3.732 18.511 101.296 1.00 46.86 N
ATOM 23 N3 G A 804 -2.371 18.514 103.045 1.00 46.96 N
ATOM 24 C4 G A 804 -1.702 17.750 103.932 1.00 46.88 C
ATOM 25 P C A 805 -1.410 23.336 102.317 1.00 42.80 P
ATOM 26 OP1 C A 805 -1.849 22.223 101.428 1.00 42.45 O
ATOM 27 OP2 C A 805 -0.397 24.297 101.807 1.00 42.74 O
ATOM 28 O5' C A 805 -2.644 24.160 102.929 1.00 43.36 O
TER
ATOM 1 O3' A B 839 2.367 19.937 107.993 1.00 61.17 O
ATOM 2 P A B 840 2.294 18.583 108.879 1.00 43.53 P
ATOM 3 OP1 A B 840 0.885 18.171 108.912 1.00 43.69 O
ATOM 4 OP2 A B 840 2.998 18.827 110.159 1.00 43.80 O
ATOM 5 O5' A B 840 3.128 17.556 108.009 1.00 42.97 O
ATOM 6 C5' A B 840 3.707 16.416 108.621 1.00 42.82 C
ATOM 7 C4' A B 840 4.780 15.810 107.770 1.00 42.33 C
ATOM 8 O4' A B 840 4.181 14.854 106.868 1.00 42.03 O
ATOM 9 C3' A B 840 5.579 16.801 106.914 1.00 42.18 C
ATOM 10 O3' A B 840 6.990 16.696 107.207 1.00 42.03 O
ATOM 11 C2' A B 840 5.325 16.351 105.466 1.00 41.79 C
ATOM 12 O2' A B 840 6.504 16.387 104.633 1.00 41.43 O
ATOM 13 C1' A B 840 4.830 14.915 105.637 1.00 41.65 C
ATOM 14 N9 A B 840 3.936 14.446 104.564 1.00 41.46 N
ATOM 15 C8 A B 840 3.025 15.135 103.824 1.00 41.56 C
ATOM 16 N7 A B 840 2.460 14.441 102.859 1.00 41.32 N
ATOM 17 C5 A B 840 3.065 13.194 102.941 1.00 41.03 C
ATOM 18 C6 A B 840 2.933 11.997 102.217 1.00 40.70 C
ATOM 19 N6 A B 840 2.099 11.810 101.208 1.00 40.60 N
ATOM 20 N1 A B 840 3.699 10.960 102.538 1.00 40.49 N
ATOM 21 C2 A B 840 4.528 11.086 103.537 1.00 40.59 C
ATOM 22 N3 A B 840 4.764 12.138 104.295 1.00 40.89 N
ATOM 23 C4 A B 840 3.986 13.191 103.958 1.00 41.10 C
ATOM 24 P U B 841 7.705 17.751 108.195 1.00 42.13 P
ATOM 25 OP1 U B 841 8.676 16.984 108.997 1.00 42.06 O
ATOM 26 OP2 U B 841 6.639 18.500 108.912 1.00 42.61 O
ATOM 27 O5' U B 841 8.480 18.736 107.198 1.00 41.97 O
TER
Atoms:
OP1: (-6.373,20.773,105.628)
OP2: (-5.903,20.921,108.117)
C3': (-1.245,21.412,103.982)
C1': (-0.514,19.589,105.339)
C5': (-3.410,21.712,105.301)
O6: (-2.596,14.399,102.985)
O4': (-1.631,20.193,105.942)
C8: (-0.394,17.067,105.579)
C2: (-3.054,17.817,102.187)
C6: (-2.473,15.619,103.066)
C5: (-1.703,16.370,103.998)
C4: (-1.702,17.750,103.932)
P: (-5.594,21.350,106.731)
C4': (-1.915,21.466,105.330)
C2': (-0.102,20.431,104.140)
O2': (1.095,21.114,104.446)
N1: (-3.116,16.451,102.160)
N2: (-3.732,18.511,101.296)
N3: (-2.371,18.514,103.045)
N7: (-0.871,15.957,105.033)
N9: (-0.859,18.202,104.956)
O5': (-4.038,21.161,106.447)
O3': (-0.802,22.663,103.596)
OP2: (-5.903,20.921,108.117)
C3': (-1.245,21.412,103.982)
C1': (-0.514,19.589,105.339)
C5': (-3.410,21.712,105.301)
O6: (-2.596,14.399,102.985)
O4': (-1.631,20.193,105.942)
C8: (-0.394,17.067,105.579)
C2: (-3.054,17.817,102.187)
C6: (-2.473,15.619,103.066)
C5: (-1.703,16.370,103.998)
C4: (-1.702,17.750,103.932)
P: (-5.594,21.350,106.731)
C4': (-1.915,21.466,105.330)
C2': (-0.102,20.431,104.140)
O2': (1.095,21.114,104.446)
N1: (-3.116,16.451,102.160)
N2: (-3.732,18.511,101.296)
N3: (-2.371,18.514,103.045)
N7: (-0.871,15.957,105.033)
N9: (-0.859,18.202,104.956)
O5': (-4.038,21.161,106.447)
O3': (-0.802,22.663,103.596)
OP1: (0.885,18.171,108.912)
OP2: (2.998,18.827,110.159)
C3': (5.579,16.801,106.914)
C1': (4.830,14.915,105.637)
C5': (3.707,16.416,108.621)
O4': (4.181,14.854,106.868)
C8: (3.025,15.135,103.824)
O2': (6.504,16.387,104.633)
C6: (2.933,11.997,102.217)
C5: (3.065,13.194,102.941)
C4: (3.986,13.191,103.958)
P: (2.294,18.583,108.879)
C4': (4.780,15.810,107.770)
C2': (5.325,16.351,105.466)
C2: (4.528,11.086,103.537)
N1: (3.699,10.960,102.538)
N3: (4.764,12.138,104.295)
N6: (2.099,11.810,101.208)
N7: (2.460,14.441,102.859)
N9: (3.936,14.446,104.564)
O5': (3.128,17.556,108.009)
O3': (6.990,16.696,107.207)
OP2: (2.998,18.827,110.159)
C3': (5.579,16.801,106.914)
C1': (4.830,14.915,105.637)
C5': (3.707,16.416,108.621)
O4': (4.181,14.854,106.868)
C8: (3.025,15.135,103.824)
O2': (6.504,16.387,104.633)
C6: (2.933,11.997,102.217)
C5: (3.065,13.194,102.941)
C4: (3.986,13.191,103.958)
P: (2.294,18.583,108.879)
C4': (4.780,15.810,107.770)
C2': (5.325,16.351,105.466)
C2: (4.528,11.086,103.537)
N1: (3.699,10.960,102.538)
N3: (4.764,12.138,104.295)
N6: (2.099,11.810,101.208)
N7: (2.460,14.441,102.859)
N9: (3.936,14.446,104.564)
O5': (3.128,17.556,108.009)
O3': (6.990,16.696,107.207)
Image (generated by PyMOL):