Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0519:0520
Extra
PDB:
ATOM 1 O3' C A 518 17.036 136.478 103.525 1.00 46.18 O
ATOM 2 P G A 519 16.683 137.496 104.720 1.00 46.44 P
ATOM 3 OP1 G A 519 16.395 136.667 105.917 1.00 46.35 O
ATOM 4 OP2 G A 519 15.682 138.484 104.251 1.00 45.30 O
ATOM 5 O5' G A 519 18.039 138.281 104.990 1.00 46.60 O
ATOM 6 C5' G A 519 19.266 137.579 105.256 1.00 45.13 C
ATOM 7 C4' G A 519 20.440 138.497 105.032 1.00 46.06 C
ATOM 8 O4' G A 519 20.442 138.956 103.653 1.00 46.21 O
ATOM 9 C3' G A 519 20.414 139.784 105.836 1.00 45.36 C
ATOM 10 O3' G A 519 20.893 139.572 107.157 1.00 44.69 O
ATOM 11 C2' G A 519 21.316 140.692 105.014 1.00 46.58 C
ATOM 12 O2' G A 519 22.689 140.423 105.197 1.00 47.91 O
ATOM 13 C1' G A 519 20.923 140.288 103.595 1.00 46.26 C
ATOM 14 N9 G A 519 19.875 141.145 103.052 1.00 48.51 N
ATOM 15 C8 G A 519 18.525 140.890 102.990 1.00 49.05 C
ATOM 16 N7 G A 519 17.845 141.865 102.449 1.00 49.10 N
ATOM 17 C5 G A 519 18.803 142.817 102.136 1.00 49.59 C
ATOM 18 C6 G A 519 18.668 144.091 101.537 1.00 51.01 C
ATOM 19 O6 G A 519 17.638 144.656 101.152 1.00 54.30 O
ATOM 20 N1 G A 519 19.897 144.727 101.403 1.00 50.74 N
ATOM 21 C2 G A 519 21.103 144.203 101.795 1.00 50.38 C
ATOM 22 N2 G A 519 22.188 144.961 101.566 1.00 49.51 N
ATOM 23 N3 G A 519 21.239 143.021 102.365 1.00 49.89 N
ATOM 24 C4 G A 519 20.059 142.387 102.501 1.00 49.14 C
ATOM 25 P A A 520 20.706 140.717 108.272 1.00 43.39 P
ATOM 26 OP1 A A 520 20.422 140.020 109.556 1.00 43.30 O
ATOM 27 OP2 A A 520 19.751 141.724 107.761 1.00 42.99 O
ATOM 28 O5' A A 520 22.147 141.390 108.359 1.00 42.44 O
TER
ATOM 1 O3' G B 519 20.893 139.572 107.157 1.00 44.69 O
ATOM 2 P A B 520 20.706 140.717 108.272 1.00 43.39 P
ATOM 3 OP1 A B 520 20.422 140.020 109.556 1.00 43.30 O
ATOM 4 OP2 A B 520 19.751 141.724 107.761 1.00 42.99 O
ATOM 5 O5' A B 520 22.147 141.390 108.359 1.00 42.44 O
ATOM 6 C5' A B 520 23.337 140.576 108.391 1.00 38.85 C
ATOM 7 C4' A B 520 24.513 141.384 108.874 1.00 38.33 C
ATOM 8 O4' A B 520 24.721 142.502 107.985 1.00 38.24 O
ATOM 9 C3' A B 520 24.348 142.023 110.239 1.00 38.11 C
ATOM 10 O3' A B 520 24.735 141.087 111.227 1.00 38.91 O
ATOM 11 C2' A B 520 25.337 143.182 110.185 1.00 38.50 C
ATOM 12 O2' A B 520 26.663 142.779 110.445 1.00 39.45 O
ATOM 13 C1' A B 520 25.256 143.589 108.714 1.00 38.69 C
ATOM 14 N9 A B 520 24.468 144.778 108.409 1.00 39.93 N
ATOM 15 C8 A B 520 23.139 144.848 108.098 1.00 39.91 C
ATOM 16 N7 A B 520 22.734 146.050 107.777 1.00 42.68 N
ATOM 17 C5 A B 520 23.869 146.830 107.903 1.00 41.96 C
ATOM 18 C6 A B 520 24.106 148.191 107.676 1.00 42.54 C
ATOM 19 N6 A B 520 23.176 149.035 107.228 1.00 44.27 N
ATOM 20 N1 A B 520 25.348 148.660 107.913 1.00 41.89 N
ATOM 21 C2 A B 520 26.287 147.805 108.334 1.00 41.72 C
ATOM 22 N3 A B 520 26.193 146.497 108.562 1.00 43.10 N
ATOM 23 C4 A B 520 24.940 146.066 108.322 1.00 42.33 C
ATOM 24 P U B 521 23.722 140.686 112.396 1.00 38.98 P
ATOM 25 OP1 U B 521 22.400 140.397 111.789 1.00 39.63 O
ATOM 26 OP2 U B 521 23.845 141.731 113.437 1.00 37.76 O
ATOM 27 O5' U B 521 24.331 139.325 112.949 1.00 38.25 O
TER
ATOM 2 P G A 519 16.683 137.496 104.720 1.00 46.44 P
ATOM 3 OP1 G A 519 16.395 136.667 105.917 1.00 46.35 O
ATOM 4 OP2 G A 519 15.682 138.484 104.251 1.00 45.30 O
ATOM 5 O5' G A 519 18.039 138.281 104.990 1.00 46.60 O
ATOM 6 C5' G A 519 19.266 137.579 105.256 1.00 45.13 C
ATOM 7 C4' G A 519 20.440 138.497 105.032 1.00 46.06 C
ATOM 8 O4' G A 519 20.442 138.956 103.653 1.00 46.21 O
ATOM 9 C3' G A 519 20.414 139.784 105.836 1.00 45.36 C
ATOM 10 O3' G A 519 20.893 139.572 107.157 1.00 44.69 O
ATOM 11 C2' G A 519 21.316 140.692 105.014 1.00 46.58 C
ATOM 12 O2' G A 519 22.689 140.423 105.197 1.00 47.91 O
ATOM 13 C1' G A 519 20.923 140.288 103.595 1.00 46.26 C
ATOM 14 N9 G A 519 19.875 141.145 103.052 1.00 48.51 N
ATOM 15 C8 G A 519 18.525 140.890 102.990 1.00 49.05 C
ATOM 16 N7 G A 519 17.845 141.865 102.449 1.00 49.10 N
ATOM 17 C5 G A 519 18.803 142.817 102.136 1.00 49.59 C
ATOM 18 C6 G A 519 18.668 144.091 101.537 1.00 51.01 C
ATOM 19 O6 G A 519 17.638 144.656 101.152 1.00 54.30 O
ATOM 20 N1 G A 519 19.897 144.727 101.403 1.00 50.74 N
ATOM 21 C2 G A 519 21.103 144.203 101.795 1.00 50.38 C
ATOM 22 N2 G A 519 22.188 144.961 101.566 1.00 49.51 N
ATOM 23 N3 G A 519 21.239 143.021 102.365 1.00 49.89 N
ATOM 24 C4 G A 519 20.059 142.387 102.501 1.00 49.14 C
ATOM 25 P A A 520 20.706 140.717 108.272 1.00 43.39 P
ATOM 26 OP1 A A 520 20.422 140.020 109.556 1.00 43.30 O
ATOM 27 OP2 A A 520 19.751 141.724 107.761 1.00 42.99 O
ATOM 28 O5' A A 520 22.147 141.390 108.359 1.00 42.44 O
TER
ATOM 1 O3' G B 519 20.893 139.572 107.157 1.00 44.69 O
ATOM 2 P A B 520 20.706 140.717 108.272 1.00 43.39 P
ATOM 3 OP1 A B 520 20.422 140.020 109.556 1.00 43.30 O
ATOM 4 OP2 A B 520 19.751 141.724 107.761 1.00 42.99 O
ATOM 5 O5' A B 520 22.147 141.390 108.359 1.00 42.44 O
ATOM 6 C5' A B 520 23.337 140.576 108.391 1.00 38.85 C
ATOM 7 C4' A B 520 24.513 141.384 108.874 1.00 38.33 C
ATOM 8 O4' A B 520 24.721 142.502 107.985 1.00 38.24 O
ATOM 9 C3' A B 520 24.348 142.023 110.239 1.00 38.11 C
ATOM 10 O3' A B 520 24.735 141.087 111.227 1.00 38.91 O
ATOM 11 C2' A B 520 25.337 143.182 110.185 1.00 38.50 C
ATOM 12 O2' A B 520 26.663 142.779 110.445 1.00 39.45 O
ATOM 13 C1' A B 520 25.256 143.589 108.714 1.00 38.69 C
ATOM 14 N9 A B 520 24.468 144.778 108.409 1.00 39.93 N
ATOM 15 C8 A B 520 23.139 144.848 108.098 1.00 39.91 C
ATOM 16 N7 A B 520 22.734 146.050 107.777 1.00 42.68 N
ATOM 17 C5 A B 520 23.869 146.830 107.903 1.00 41.96 C
ATOM 18 C6 A B 520 24.106 148.191 107.676 1.00 42.54 C
ATOM 19 N6 A B 520 23.176 149.035 107.228 1.00 44.27 N
ATOM 20 N1 A B 520 25.348 148.660 107.913 1.00 41.89 N
ATOM 21 C2 A B 520 26.287 147.805 108.334 1.00 41.72 C
ATOM 22 N3 A B 520 26.193 146.497 108.562 1.00 43.10 N
ATOM 23 C4 A B 520 24.940 146.066 108.322 1.00 42.33 C
ATOM 24 P U B 521 23.722 140.686 112.396 1.00 38.98 P
ATOM 25 OP1 U B 521 22.400 140.397 111.789 1.00 39.63 O
ATOM 26 OP2 U B 521 23.845 141.731 113.437 1.00 37.76 O
ATOM 27 O5' U B 521 24.331 139.325 112.949 1.00 38.25 O
TER
Atoms:
OP1: (16.395,136.667,105.917)
OP2: (15.682,138.484,104.251)
C3': (20.414,139.784,105.836)
C1': (20.923,140.288,103.595)
C5': (19.266,137.579,105.256)
O6: (17.638,144.656,101.152)
O4': (20.442,138.956,103.653)
C8: (18.525,140.890,102.990)
C2: (21.103,144.203,101.795)
C6: (18.668,144.091,101.537)
C5: (18.803,142.817,102.136)
C4: (20.059,142.387,102.501)
P: (16.683,137.496,104.720)
C4': (20.440,138.497,105.032)
C2': (21.316,140.692,105.014)
O2': (22.689,140.423,105.197)
N1: (19.897,144.727,101.403)
N2: (22.188,144.961,101.566)
N3: (21.239,143.021,102.365)
N7: (17.845,141.865,102.449)
N9: (19.875,141.145,103.052)
O5': (18.039,138.281,104.990)
O3': (20.893,139.572,107.157)
OP2: (15.682,138.484,104.251)
C3': (20.414,139.784,105.836)
C1': (20.923,140.288,103.595)
C5': (19.266,137.579,105.256)
O6: (17.638,144.656,101.152)
O4': (20.442,138.956,103.653)
C8: (18.525,140.890,102.990)
C2: (21.103,144.203,101.795)
C6: (18.668,144.091,101.537)
C5: (18.803,142.817,102.136)
C4: (20.059,142.387,102.501)
P: (16.683,137.496,104.720)
C4': (20.440,138.497,105.032)
C2': (21.316,140.692,105.014)
O2': (22.689,140.423,105.197)
N1: (19.897,144.727,101.403)
N2: (22.188,144.961,101.566)
N3: (21.239,143.021,102.365)
N7: (17.845,141.865,102.449)
N9: (19.875,141.145,103.052)
O5': (18.039,138.281,104.990)
O3': (20.893,139.572,107.157)
OP1: (20.422,140.020,109.556)
OP2: (19.751,141.724,107.761)
C3': (24.348,142.023,110.239)
C1': (25.256,143.589,108.714)
C5': (23.337,140.576,108.391)
O4': (24.721,142.502,107.985)
C8: (23.139,144.848,108.098)
O2': (26.663,142.779,110.445)
C6: (24.106,148.191,107.676)
C5: (23.869,146.830,107.903)
C4: (24.940,146.066,108.322)
P: (20.706,140.717,108.272)
C4': (24.513,141.384,108.874)
C2': (25.337,143.182,110.185)
C2: (26.287,147.805,108.334)
N1: (25.348,148.660,107.913)
N3: (26.193,146.497,108.562)
N6: (23.176,149.035,107.228)
N7: (22.734,146.050,107.777)
N9: (24.468,144.778,108.409)
O5': (22.147,141.390,108.359)
O3': (24.735,141.087,111.227)
OP2: (19.751,141.724,107.761)
C3': (24.348,142.023,110.239)
C1': (25.256,143.589,108.714)
C5': (23.337,140.576,108.391)
O4': (24.721,142.502,107.985)
C8: (23.139,144.848,108.098)
O2': (26.663,142.779,110.445)
C6: (24.106,148.191,107.676)
C5: (23.869,146.830,107.903)
C4: (24.940,146.066,108.322)
P: (20.706,140.717,108.272)
C4': (24.513,141.384,108.874)
C2': (25.337,143.182,110.185)
C2: (26.287,147.805,108.334)
N1: (25.348,148.660,107.913)
N3: (26.193,146.497,108.562)
N6: (23.176,149.035,107.228)
N7: (22.734,146.050,107.777)
N9: (24.468,144.778,108.409)
O5': (22.147,141.390,108.359)
O3': (24.735,141.087,111.227)
Image (generated by PyMOL):