ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIJ:01217:01218

Extra

PDB:
ATOM 1 O3' C A1216 12.776 104.238 112.941 1.00 39.30 O
ATOM 2 P G A1217 12.807 104.014 111.355 1.00 39.31 P
ATOM 3 OP1 G A1217 12.553 105.344 110.756 1.00 37.91 O
ATOM 4 OP2 G A1217 11.940 102.858 111.000 1.00 37.82 O
ATOM 5 O5' G A1217 14.311 103.597 111.049 1.00 41.55 O
ATOM 6 C5' G A1217 15.400 104.526 111.227 1.00 40.39 C
ATOM 7 C4' G A1217 16.710 103.828 110.957 1.00 40.75 C
ATOM 8 O4' G A1217 16.886 102.759 111.922 1.00 41.21 O
ATOM 9 C3' G A1217 16.767 103.144 109.601 1.00 40.21 C
ATOM 10 O3' G A1217 17.177 104.073 108.601 1.00 38.88 O
ATOM 11 C2' G A1217 17.757 102.008 109.834 1.00 40.26 C
ATOM 12 O2' G A1217 19.104 102.427 109.766 1.00 40.79 O
ATOM 13 C1' G A1217 17.434 101.619 111.281 1.00 40.81 C
ATOM 14 N9 G A1217 16.484 100.522 111.430 1.00 40.79 N
ATOM 15 C8 G A1217 15.112 100.613 111.444 1.00 40.50 C
ATOM 16 N7 G A1217 14.525 99.463 111.625 1.00 39.94 N
ATOM 17 C5 G A1217 15.567 98.555 111.732 1.00 40.01 C
ATOM 18 C6 G A1217 15.545 97.155 111.945 1.00 41.04 C
ATOM 19 O6 G A1217 14.566 96.414 112.095 1.00 45.38 O
ATOM 20 N1 G A1217 16.829 96.621 111.985 1.00 40.64 N
ATOM 21 C2 G A1217 17.989 97.343 111.846 1.00 39.81 C
ATOM 22 N2 G A1217 19.131 96.648 111.931 1.00 36.47 N
ATOM 23 N3 G A1217 18.024 98.653 111.646 1.00 40.89 N
ATOM 24 C4 G A1217 16.785 99.190 111.603 1.00 41.16 C
ATOM 25 P A A1218 16.560 103.982 107.121 1.00 41.84 P
ATOM 26 OP1 A A1218 16.779 105.297 106.461 1.00 39.18 O
ATOM 27 OP2 A A1218 15.182 103.412 107.178 1.00 42.54 O
ATOM 28 O5' A A1218 17.484 102.904 106.409 1.00 38.90 O
TER

ATOM 1 O3' G B1217 17.177 104.073 108.601 1.00 38.88 O
ATOM 2 P A B1218 16.560 103.982 107.121 1.00 41.84 P
ATOM 3 OP1 A B1218 16.779 105.297 106.461 1.00 39.18 O
ATOM 4 OP2 A B1218 15.182 103.412 107.178 1.00 42.54 O
ATOM 5 O5' A B1218 17.484 102.904 106.409 1.00 38.90 O
ATOM 6 C5' A B1218 17.082 102.310 105.175 1.00 37.19 C
ATOM 7 C4' A B1218 18.260 102.194 104.244 1.00 37.35 C
ATOM 8 O4' A B1218 19.286 101.361 104.836 1.00 36.13 O
ATOM 9 C3' A B1218 17.930 101.521 102.929 1.00 37.08 C
ATOM 10 O3' A B1218 17.423 102.497 102.036 1.00 36.44 O
ATOM 11 C2' A B1218 19.280 100.980 102.502 1.00 36.02 C
ATOM 12 O2' A B1218 20.092 102.022 102.012 1.00 39.88 O
ATOM 13 C1' A B1218 19.852 100.527 103.844 1.00 35.29 C
ATOM 14 N9 A B1218 19.526 99.148 104.197 1.00 34.98 N
ATOM 15 C8 A B1218 18.465 98.721 104.954 1.00 35.90 C
ATOM 16 N7 A B1218 18.432 97.424 105.134 1.00 36.60 N
ATOM 17 C5 A B1218 19.540 96.963 104.446 1.00 33.13 C
ATOM 18 C6 A B1218 20.054 95.677 104.253 1.00 33.30 C
ATOM 19 N6 A B1218 19.505 94.578 104.771 1.00 32.40 N
ATOM 20 N1 A B1218 21.169 95.553 103.502 1.00 34.79 N
ATOM 21 C2 A B1218 21.724 96.662 102.993 1.00 35.91 C
ATOM 22 N3 A B1218 21.334 97.931 103.110 1.00 34.20 N
ATOM 23 C4 A B1218 20.221 98.013 103.856 1.00 34.79 C
ATOM 24 P G B1219 16.179 102.148 101.091 1.00 35.38 P
ATOM 25 OP1 G B1219 15.536 103.434 100.742 1.00 35.78 O
ATOM 26 OP2 G B1219 15.381 101.071 101.734 1.00 38.24 O
ATOM 27 O5' G B1219 16.861 101.552 99.785 1.00 34.85 O
TER

Atoms:
OP1: (12.553,105.344,110.756)
OP2: (11.940,102.858,111.000)
C3': (16.767,103.144,109.601)
C1': (17.434,101.619,111.281)
C5': (15.400,104.526,111.227)
O6: (14.566,96.414,112.095)
O4': (16.886,102.759,111.922)
C8: (15.112,100.613,111.444)
C2: (17.989,97.343,111.846)
C6: (15.545,97.155,111.945)
C5: (15.567,98.555,111.732)
C4: (16.785,99.190,111.603)
P: (12.807,104.014,111.355)
C4': (16.710,103.828,110.957)
C2': (17.757,102.008,109.834)
O2': (19.104,102.427,109.766)
N1: (16.829,96.621,111.985)
N2: (19.131,96.648,111.931)
N3: (18.024,98.653,111.646)
N7: (14.525,99.463,111.625)
N9: (16.484,100.522,111.430)
O5': (14.311,103.597,111.049)
O3': (17.177,104.073,108.601)
OP1: (16.779,105.297,106.461)
OP2: (15.182,103.412,107.178)
C3': (17.930,101.521,102.929)
C1': (19.852,100.527,103.844)
C5': (17.082,102.310,105.175)
O4': (19.286,101.361,104.836)
C8: (18.465,98.721,104.954)
O2': (20.092,102.022,102.012)
C6: (20.054,95.677,104.253)
C5: (19.540,96.963,104.446)
C4: (20.221,98.013,103.856)
P: (16.560,103.982,107.121)
C4': (18.260,102.194,104.244)
C2': (19.280,100.980,102.502)
C2: (21.724,96.662,102.993)
N1: (21.169,95.553,103.502)
N3: (21.334,97.931,103.110)
N6: (19.505,94.578,104.771)
N7: (18.432,97.424,105.134)
N9: (19.526,99.148,104.197)
O5': (17.484,102.904,106.409)
O3': (17.423,102.497,102.036)
Image (generated by PyMOL):
PyMOL image
show in jmol