Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0519:0520
Extra
PDB:
ATOM 1 O3' C A 518 17.259 136.246 103.455 1.00 44.98 O
ATOM 2 P G A 519 16.970 137.264 104.666 1.00 45.49 P
ATOM 3 OP1 G A 519 16.827 136.441 105.891 1.00 46.05 O
ATOM 4 OP2 G A 519 15.895 138.211 104.286 1.00 43.26 O
ATOM 5 O5' G A 519 18.321 138.088 104.814 1.00 46.93 O
ATOM 6 C5' G A 519 19.569 137.417 105.064 1.00 44.67 C
ATOM 7 C4' G A 519 20.715 138.373 104.869 1.00 43.84 C
ATOM 8 O4' G A 519 20.717 138.864 103.503 1.00 44.17 O
ATOM 9 C3' G A 519 20.645 139.632 105.711 1.00 43.39 C
ATOM 10 O3' G A 519 21.138 139.367 107.017 1.00 42.25 O
ATOM 11 C2' G A 519 21.519 140.589 104.917 1.00 45.42 C
ATOM 12 O2' G A 519 22.897 140.332 105.088 1.00 48.41 O
ATOM 13 C1' G A 519 21.143 140.213 103.485 1.00 46.11 C
ATOM 14 N9 G A 519 20.061 141.033 102.955 1.00 49.01 N
ATOM 15 C8 G A 519 18.717 140.740 102.946 1.00 50.60 C
ATOM 16 N7 G A 519 17.993 141.678 102.397 1.00 50.79 N
ATOM 17 C5 G A 519 18.913 142.645 102.023 1.00 50.99 C
ATOM 18 C6 G A 519 18.721 143.888 101.386 1.00 52.10 C
ATOM 19 O6 G A 519 17.664 144.400 101.005 1.00 55.53 O
ATOM 20 N1 G A 519 19.924 144.558 101.197 1.00 52.01 N
ATOM 21 C2 G A 519 21.156 144.084 101.565 1.00 51.39 C
ATOM 22 N2 G A 519 22.205 144.868 101.274 1.00 52.17 N
ATOM 23 N3 G A 519 21.349 142.926 102.165 1.00 50.69 N
ATOM 24 C4 G A 519 20.192 142.263 102.361 1.00 50.26 C
ATOM 25 P A A 520 20.945 140.449 108.190 1.00 41.36 P
ATOM 26 OP1 A A 520 20.806 139.692 109.459 1.00 40.81 O
ATOM 27 OP2 A A 520 19.889 141.409 107.794 1.00 42.10 O
ATOM 28 O5' A A 520 22.343 141.201 108.217 1.00 39.06 O
TER
ATOM 1 O3' G B 519 21.138 139.367 107.017 1.00 42.25 O
ATOM 2 P A B 520 20.945 140.449 108.190 1.00 41.36 P
ATOM 3 OP1 A B 520 20.806 139.692 109.459 1.00 40.81 O
ATOM 4 OP2 A B 520 19.889 141.409 107.794 1.00 42.10 O
ATOM 5 O5' A B 520 22.343 141.201 108.217 1.00 39.06 O
ATOM 6 C5' A B 520 23.558 140.450 108.111 1.00 37.56 C
ATOM 7 C4' A B 520 24.708 141.243 108.650 1.00 36.76 C
ATOM 8 O4' A B 520 24.951 142.380 107.803 1.00 37.01 O
ATOM 9 C3' A B 520 24.493 141.831 110.028 1.00 36.53 C
ATOM 10 O3' A B 520 24.842 140.837 110.973 1.00 38.45 O
ATOM 11 C2' A B 520 25.490 142.982 110.044 1.00 36.88 C
ATOM 12 O2' A B 520 26.802 142.539 110.306 1.00 36.00 O
ATOM 13 C1' A B 520 25.456 143.440 108.584 1.00 38.41 C
ATOM 14 N9 A B 520 24.678 144.635 108.280 1.00 41.83 N
ATOM 15 C8 A B 520 23.353 144.720 107.939 1.00 42.51 C
ATOM 16 N7 A B 520 22.964 145.932 107.632 1.00 43.55 N
ATOM 17 C5 A B 520 24.103 146.699 107.801 1.00 43.28 C
ATOM 18 C6 A B 520 24.353 148.057 107.612 1.00 44.07 C
ATOM 19 N6 A B 520 23.438 148.917 107.166 1.00 45.98 N
ATOM 20 N1 A B 520 25.594 148.511 107.885 1.00 44.66 N
ATOM 21 C2 A B 520 26.519 147.641 108.302 1.00 44.27 C
ATOM 22 N3 A B 520 26.410 146.332 108.499 1.00 44.56 N
ATOM 23 C4 A B 520 25.161 145.918 108.226 1.00 43.80 C
ATOM 24 P U B 521 23.905 140.559 112.236 1.00 37.15 P
ATOM 25 OP1 U B 521 22.524 140.360 111.751 1.00 36.98 O
ATOM 26 OP2 U B 521 24.198 141.634 113.209 1.00 36.95 O
ATOM 27 O5' U B 521 24.452 139.178 112.810 1.00 34.84 O
TER
ATOM 2 P G A 519 16.970 137.264 104.666 1.00 45.49 P
ATOM 3 OP1 G A 519 16.827 136.441 105.891 1.00 46.05 O
ATOM 4 OP2 G A 519 15.895 138.211 104.286 1.00 43.26 O
ATOM 5 O5' G A 519 18.321 138.088 104.814 1.00 46.93 O
ATOM 6 C5' G A 519 19.569 137.417 105.064 1.00 44.67 C
ATOM 7 C4' G A 519 20.715 138.373 104.869 1.00 43.84 C
ATOM 8 O4' G A 519 20.717 138.864 103.503 1.00 44.17 O
ATOM 9 C3' G A 519 20.645 139.632 105.711 1.00 43.39 C
ATOM 10 O3' G A 519 21.138 139.367 107.017 1.00 42.25 O
ATOM 11 C2' G A 519 21.519 140.589 104.917 1.00 45.42 C
ATOM 12 O2' G A 519 22.897 140.332 105.088 1.00 48.41 O
ATOM 13 C1' G A 519 21.143 140.213 103.485 1.00 46.11 C
ATOM 14 N9 G A 519 20.061 141.033 102.955 1.00 49.01 N
ATOM 15 C8 G A 519 18.717 140.740 102.946 1.00 50.60 C
ATOM 16 N7 G A 519 17.993 141.678 102.397 1.00 50.79 N
ATOM 17 C5 G A 519 18.913 142.645 102.023 1.00 50.99 C
ATOM 18 C6 G A 519 18.721 143.888 101.386 1.00 52.10 C
ATOM 19 O6 G A 519 17.664 144.400 101.005 1.00 55.53 O
ATOM 20 N1 G A 519 19.924 144.558 101.197 1.00 52.01 N
ATOM 21 C2 G A 519 21.156 144.084 101.565 1.00 51.39 C
ATOM 22 N2 G A 519 22.205 144.868 101.274 1.00 52.17 N
ATOM 23 N3 G A 519 21.349 142.926 102.165 1.00 50.69 N
ATOM 24 C4 G A 519 20.192 142.263 102.361 1.00 50.26 C
ATOM 25 P A A 520 20.945 140.449 108.190 1.00 41.36 P
ATOM 26 OP1 A A 520 20.806 139.692 109.459 1.00 40.81 O
ATOM 27 OP2 A A 520 19.889 141.409 107.794 1.00 42.10 O
ATOM 28 O5' A A 520 22.343 141.201 108.217 1.00 39.06 O
TER
ATOM 1 O3' G B 519 21.138 139.367 107.017 1.00 42.25 O
ATOM 2 P A B 520 20.945 140.449 108.190 1.00 41.36 P
ATOM 3 OP1 A B 520 20.806 139.692 109.459 1.00 40.81 O
ATOM 4 OP2 A B 520 19.889 141.409 107.794 1.00 42.10 O
ATOM 5 O5' A B 520 22.343 141.201 108.217 1.00 39.06 O
ATOM 6 C5' A B 520 23.558 140.450 108.111 1.00 37.56 C
ATOM 7 C4' A B 520 24.708 141.243 108.650 1.00 36.76 C
ATOM 8 O4' A B 520 24.951 142.380 107.803 1.00 37.01 O
ATOM 9 C3' A B 520 24.493 141.831 110.028 1.00 36.53 C
ATOM 10 O3' A B 520 24.842 140.837 110.973 1.00 38.45 O
ATOM 11 C2' A B 520 25.490 142.982 110.044 1.00 36.88 C
ATOM 12 O2' A B 520 26.802 142.539 110.306 1.00 36.00 O
ATOM 13 C1' A B 520 25.456 143.440 108.584 1.00 38.41 C
ATOM 14 N9 A B 520 24.678 144.635 108.280 1.00 41.83 N
ATOM 15 C8 A B 520 23.353 144.720 107.939 1.00 42.51 C
ATOM 16 N7 A B 520 22.964 145.932 107.632 1.00 43.55 N
ATOM 17 C5 A B 520 24.103 146.699 107.801 1.00 43.28 C
ATOM 18 C6 A B 520 24.353 148.057 107.612 1.00 44.07 C
ATOM 19 N6 A B 520 23.438 148.917 107.166 1.00 45.98 N
ATOM 20 N1 A B 520 25.594 148.511 107.885 1.00 44.66 N
ATOM 21 C2 A B 520 26.519 147.641 108.302 1.00 44.27 C
ATOM 22 N3 A B 520 26.410 146.332 108.499 1.00 44.56 N
ATOM 23 C4 A B 520 25.161 145.918 108.226 1.00 43.80 C
ATOM 24 P U B 521 23.905 140.559 112.236 1.00 37.15 P
ATOM 25 OP1 U B 521 22.524 140.360 111.751 1.00 36.98 O
ATOM 26 OP2 U B 521 24.198 141.634 113.209 1.00 36.95 O
ATOM 27 O5' U B 521 24.452 139.178 112.810 1.00 34.84 O
TER
Atoms:
OP1: (16.827,136.441,105.891)
OP2: (15.895,138.211,104.286)
C3': (20.645,139.632,105.711)
C1': (21.143,140.213,103.485)
C5': (19.569,137.417,105.064)
O6: (17.664,144.400,101.005)
O4': (20.717,138.864,103.503)
C8: (18.717,140.740,102.946)
C2: (21.156,144.084,101.565)
C6: (18.721,143.888,101.386)
C5: (18.913,142.645,102.023)
C4: (20.192,142.263,102.361)
P: (16.970,137.264,104.666)
C4': (20.715,138.373,104.869)
C2': (21.519,140.589,104.917)
O2': (22.897,140.332,105.088)
N1: (19.924,144.558,101.197)
N2: (22.205,144.868,101.274)
N3: (21.349,142.926,102.165)
N7: (17.993,141.678,102.397)
N9: (20.061,141.033,102.955)
O5': (18.321,138.088,104.814)
O3': (21.138,139.367,107.017)
OP2: (15.895,138.211,104.286)
C3': (20.645,139.632,105.711)
C1': (21.143,140.213,103.485)
C5': (19.569,137.417,105.064)
O6: (17.664,144.400,101.005)
O4': (20.717,138.864,103.503)
C8: (18.717,140.740,102.946)
C2: (21.156,144.084,101.565)
C6: (18.721,143.888,101.386)
C5: (18.913,142.645,102.023)
C4: (20.192,142.263,102.361)
P: (16.970,137.264,104.666)
C4': (20.715,138.373,104.869)
C2': (21.519,140.589,104.917)
O2': (22.897,140.332,105.088)
N1: (19.924,144.558,101.197)
N2: (22.205,144.868,101.274)
N3: (21.349,142.926,102.165)
N7: (17.993,141.678,102.397)
N9: (20.061,141.033,102.955)
O5': (18.321,138.088,104.814)
O3': (21.138,139.367,107.017)
OP1: (20.806,139.692,109.459)
OP2: (19.889,141.409,107.794)
C3': (24.493,141.831,110.028)
C1': (25.456,143.440,108.584)
C5': (23.558,140.450,108.111)
O4': (24.951,142.380,107.803)
C8: (23.353,144.720,107.939)
O2': (26.802,142.539,110.306)
C6: (24.353,148.057,107.612)
C5: (24.103,146.699,107.801)
C4: (25.161,145.918,108.226)
P: (20.945,140.449,108.190)
C4': (24.708,141.243,108.650)
C2': (25.490,142.982,110.044)
C2: (26.519,147.641,108.302)
N1: (25.594,148.511,107.885)
N3: (26.410,146.332,108.499)
N6: (23.438,148.917,107.166)
N7: (22.964,145.932,107.632)
N9: (24.678,144.635,108.280)
O5': (22.343,141.201,108.217)
O3': (24.842,140.837,110.973)
OP2: (19.889,141.409,107.794)
C3': (24.493,141.831,110.028)
C1': (25.456,143.440,108.584)
C5': (23.558,140.450,108.111)
O4': (24.951,142.380,107.803)
C8: (23.353,144.720,107.939)
O2': (26.802,142.539,110.306)
C6: (24.353,148.057,107.612)
C5: (24.103,146.699,107.801)
C4: (25.161,145.918,108.226)
P: (20.945,140.449,108.190)
C4': (24.708,141.243,108.650)
C2': (25.490,142.982,110.044)
C2: (26.519,147.641,108.302)
N1: (25.594,148.511,107.885)
N3: (26.410,146.332,108.499)
N6: (23.438,148.917,107.166)
N7: (22.964,145.932,107.632)
N9: (24.678,144.635,108.280)
O5': (22.343,141.201,108.217)
O3': (24.842,140.837,110.973)
Image (generated by PyMOL):