Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0519:0520
Extra
PDB:
ATOM 1 O3' C A 518 17.256 136.666 103.791 1.00 54.24 O
ATOM 2 P G A 519 16.811 137.642 104.987 1.00 56.17 P
ATOM 3 OP1 G A 519 16.421 136.763 106.114 1.00 56.00 O
ATOM 4 OP2 G A 519 15.854 138.648 104.467 1.00 55.82 O
ATOM 5 O5' G A 519 18.131 138.431 105.401 1.00 56.39 O
ATOM 6 C5' G A 519 19.366 137.740 105.657 1.00 55.40 C
ATOM 7 C4' G A 519 20.534 138.661 105.401 1.00 54.34 C
ATOM 8 O4' G A 519 20.484 139.139 104.030 1.00 54.74 O
ATOM 9 C3' G A 519 20.542 139.934 106.226 1.00 53.78 C
ATOM 10 O3' G A 519 21.091 139.689 107.514 1.00 51.77 O
ATOM 11 C2' G A 519 21.409 140.859 105.385 1.00 54.57 C
ATOM 12 O2' G A 519 22.786 140.597 105.529 1.00 55.73 O
ATOM 13 C1' G A 519 20.982 140.464 103.972 1.00 55.04 C
ATOM 14 N9 G A 519 19.948 141.338 103.428 1.00 56.86 N
ATOM 15 C8 G A 519 18.587 141.128 103.396 1.00 56.96 C
ATOM 16 N7 G A 519 17.931 142.114 102.846 1.00 56.31 N
ATOM 17 C5 G A 519 18.917 143.027 102.495 1.00 58.23 C
ATOM 18 C6 G A 519 18.819 144.294 101.870 1.00 58.76 C
ATOM 19 O6 G A 519 17.810 144.887 101.490 1.00 62.42 O
ATOM 20 N1 G A 519 20.068 144.878 101.700 1.00 58.74 N
ATOM 21 C2 G A 519 21.261 144.315 102.075 1.00 57.51 C
ATOM 22 N2 G A 519 22.366 145.020 101.798 1.00 57.85 N
ATOM 23 N3 G A 519 21.366 143.143 102.669 1.00 57.29 N
ATOM 24 C4 G A 519 20.165 142.558 102.845 1.00 57.74 C
ATOM 25 P A A 520 20.898 140.767 108.685 1.00 47.46 P
ATOM 26 OP1 A A 520 20.691 140.017 109.947 1.00 47.02 O
ATOM 27 OP2 A A 520 19.880 141.733 108.234 1.00 48.40 O
ATOM 28 O5' A A 520 22.310 141.492 108.756 1.00 46.37 O
TER
ATOM 1 O3' G B 519 21.091 139.689 107.514 1.00 51.77 O
ATOM 2 P A B 520 20.898 140.767 108.685 1.00 47.46 P
ATOM 3 OP1 A B 520 20.691 140.017 109.947 1.00 47.02 O
ATOM 4 OP2 A B 520 19.880 141.733 108.234 1.00 48.40 O
ATOM 5 O5' A B 520 22.310 141.492 108.756 1.00 46.37 O
ATOM 6 C5' A B 520 23.520 140.720 108.732 1.00 45.80 C
ATOM 7 C4' A B 520 24.684 141.550 109.198 1.00 45.33 C
ATOM 8 O4' A B 520 24.892 142.657 108.291 1.00 46.45 O
ATOM 9 C3' A B 520 24.504 142.205 110.551 1.00 44.91 C
ATOM 10 O3' A B 520 24.867 141.270 111.552 1.00 45.11 O
ATOM 11 C2' A B 520 25.492 143.367 110.487 1.00 46.15 C
ATOM 12 O2' A B 520 26.822 142.974 110.745 1.00 46.35 O
ATOM 13 C1' A B 520 25.419 143.754 109.010 1.00 47.05 C
ATOM 14 N9 A B 520 24.641 144.946 108.685 1.00 49.39 N
ATOM 15 C8 A B 520 23.331 145.025 108.287 1.00 50.28 C
ATOM 16 N7 A B 520 22.944 146.240 107.987 1.00 51.25 N
ATOM 17 C5 A B 520 24.068 147.015 108.216 1.00 50.77 C
ATOM 18 C6 A B 520 24.316 148.382 108.055 1.00 51.64 C
ATOM 19 N6 A B 520 23.414 149.243 107.584 1.00 51.34 N
ATOM 20 N1 A B 520 25.544 148.843 108.389 1.00 52.29 N
ATOM 21 C2 A B 520 26.455 147.974 108.840 1.00 51.38 C
ATOM 22 N3 A B 520 26.346 146.659 109.015 1.00 51.76 N
ATOM 23 C4 A B 520 25.113 146.237 108.677 1.00 51.14 C
ATOM 24 P U B 521 23.846 140.921 112.733 1.00 43.33 P
ATOM 25 OP1 U B 521 22.500 140.785 112.133 1.00 43.18 O
ATOM 26 OP2 U B 521 24.076 141.919 113.799 1.00 42.83 O
ATOM 27 O5' U B 521 24.344 139.497 113.242 1.00 40.91 O
TER
ATOM 2 P G A 519 16.811 137.642 104.987 1.00 56.17 P
ATOM 3 OP1 G A 519 16.421 136.763 106.114 1.00 56.00 O
ATOM 4 OP2 G A 519 15.854 138.648 104.467 1.00 55.82 O
ATOM 5 O5' G A 519 18.131 138.431 105.401 1.00 56.39 O
ATOM 6 C5' G A 519 19.366 137.740 105.657 1.00 55.40 C
ATOM 7 C4' G A 519 20.534 138.661 105.401 1.00 54.34 C
ATOM 8 O4' G A 519 20.484 139.139 104.030 1.00 54.74 O
ATOM 9 C3' G A 519 20.542 139.934 106.226 1.00 53.78 C
ATOM 10 O3' G A 519 21.091 139.689 107.514 1.00 51.77 O
ATOM 11 C2' G A 519 21.409 140.859 105.385 1.00 54.57 C
ATOM 12 O2' G A 519 22.786 140.597 105.529 1.00 55.73 O
ATOM 13 C1' G A 519 20.982 140.464 103.972 1.00 55.04 C
ATOM 14 N9 G A 519 19.948 141.338 103.428 1.00 56.86 N
ATOM 15 C8 G A 519 18.587 141.128 103.396 1.00 56.96 C
ATOM 16 N7 G A 519 17.931 142.114 102.846 1.00 56.31 N
ATOM 17 C5 G A 519 18.917 143.027 102.495 1.00 58.23 C
ATOM 18 C6 G A 519 18.819 144.294 101.870 1.00 58.76 C
ATOM 19 O6 G A 519 17.810 144.887 101.490 1.00 62.42 O
ATOM 20 N1 G A 519 20.068 144.878 101.700 1.00 58.74 N
ATOM 21 C2 G A 519 21.261 144.315 102.075 1.00 57.51 C
ATOM 22 N2 G A 519 22.366 145.020 101.798 1.00 57.85 N
ATOM 23 N3 G A 519 21.366 143.143 102.669 1.00 57.29 N
ATOM 24 C4 G A 519 20.165 142.558 102.845 1.00 57.74 C
ATOM 25 P A A 520 20.898 140.767 108.685 1.00 47.46 P
ATOM 26 OP1 A A 520 20.691 140.017 109.947 1.00 47.02 O
ATOM 27 OP2 A A 520 19.880 141.733 108.234 1.00 48.40 O
ATOM 28 O5' A A 520 22.310 141.492 108.756 1.00 46.37 O
TER
ATOM 1 O3' G B 519 21.091 139.689 107.514 1.00 51.77 O
ATOM 2 P A B 520 20.898 140.767 108.685 1.00 47.46 P
ATOM 3 OP1 A B 520 20.691 140.017 109.947 1.00 47.02 O
ATOM 4 OP2 A B 520 19.880 141.733 108.234 1.00 48.40 O
ATOM 5 O5' A B 520 22.310 141.492 108.756 1.00 46.37 O
ATOM 6 C5' A B 520 23.520 140.720 108.732 1.00 45.80 C
ATOM 7 C4' A B 520 24.684 141.550 109.198 1.00 45.33 C
ATOM 8 O4' A B 520 24.892 142.657 108.291 1.00 46.45 O
ATOM 9 C3' A B 520 24.504 142.205 110.551 1.00 44.91 C
ATOM 10 O3' A B 520 24.867 141.270 111.552 1.00 45.11 O
ATOM 11 C2' A B 520 25.492 143.367 110.487 1.00 46.15 C
ATOM 12 O2' A B 520 26.822 142.974 110.745 1.00 46.35 O
ATOM 13 C1' A B 520 25.419 143.754 109.010 1.00 47.05 C
ATOM 14 N9 A B 520 24.641 144.946 108.685 1.00 49.39 N
ATOM 15 C8 A B 520 23.331 145.025 108.287 1.00 50.28 C
ATOM 16 N7 A B 520 22.944 146.240 107.987 1.00 51.25 N
ATOM 17 C5 A B 520 24.068 147.015 108.216 1.00 50.77 C
ATOM 18 C6 A B 520 24.316 148.382 108.055 1.00 51.64 C
ATOM 19 N6 A B 520 23.414 149.243 107.584 1.00 51.34 N
ATOM 20 N1 A B 520 25.544 148.843 108.389 1.00 52.29 N
ATOM 21 C2 A B 520 26.455 147.974 108.840 1.00 51.38 C
ATOM 22 N3 A B 520 26.346 146.659 109.015 1.00 51.76 N
ATOM 23 C4 A B 520 25.113 146.237 108.677 1.00 51.14 C
ATOM 24 P U B 521 23.846 140.921 112.733 1.00 43.33 P
ATOM 25 OP1 U B 521 22.500 140.785 112.133 1.00 43.18 O
ATOM 26 OP2 U B 521 24.076 141.919 113.799 1.00 42.83 O
ATOM 27 O5' U B 521 24.344 139.497 113.242 1.00 40.91 O
TER
Atoms:
OP1: (16.421,136.763,106.114)
OP2: (15.854,138.648,104.467)
C3': (20.542,139.934,106.226)
C1': (20.982,140.464,103.972)
C5': (19.366,137.740,105.657)
O6: (17.810,144.887,101.490)
O4': (20.484,139.139,104.030)
C8: (18.587,141.128,103.396)
C2: (21.261,144.315,102.075)
C6: (18.819,144.294,101.870)
C5: (18.917,143.027,102.495)
C4: (20.165,142.558,102.845)
P: (16.811,137.642,104.987)
C4': (20.534,138.661,105.401)
C2': (21.409,140.859,105.385)
O2': (22.786,140.597,105.529)
N1: (20.068,144.878,101.700)
N2: (22.366,145.020,101.798)
N3: (21.366,143.143,102.669)
N7: (17.931,142.114,102.846)
N9: (19.948,141.338,103.428)
O5': (18.131,138.431,105.401)
O3': (21.091,139.689,107.514)
OP2: (15.854,138.648,104.467)
C3': (20.542,139.934,106.226)
C1': (20.982,140.464,103.972)
C5': (19.366,137.740,105.657)
O6: (17.810,144.887,101.490)
O4': (20.484,139.139,104.030)
C8: (18.587,141.128,103.396)
C2: (21.261,144.315,102.075)
C6: (18.819,144.294,101.870)
C5: (18.917,143.027,102.495)
C4: (20.165,142.558,102.845)
P: (16.811,137.642,104.987)
C4': (20.534,138.661,105.401)
C2': (21.409,140.859,105.385)
O2': (22.786,140.597,105.529)
N1: (20.068,144.878,101.700)
N2: (22.366,145.020,101.798)
N3: (21.366,143.143,102.669)
N7: (17.931,142.114,102.846)
N9: (19.948,141.338,103.428)
O5': (18.131,138.431,105.401)
O3': (21.091,139.689,107.514)
OP1: (20.691,140.017,109.947)
OP2: (19.880,141.733,108.234)
C3': (24.504,142.205,110.551)
C1': (25.419,143.754,109.010)
C5': (23.520,140.720,108.732)
O4': (24.892,142.657,108.291)
C8: (23.331,145.025,108.287)
O2': (26.822,142.974,110.745)
C6: (24.316,148.382,108.055)
C5: (24.068,147.015,108.216)
C4: (25.113,146.237,108.677)
P: (20.898,140.767,108.685)
C4': (24.684,141.550,109.198)
C2': (25.492,143.367,110.487)
C2: (26.455,147.974,108.840)
N1: (25.544,148.843,108.389)
N3: (26.346,146.659,109.015)
N6: (23.414,149.243,107.584)
N7: (22.944,146.240,107.987)
N9: (24.641,144.946,108.685)
O5': (22.310,141.492,108.756)
O3': (24.867,141.270,111.552)
OP2: (19.880,141.733,108.234)
C3': (24.504,142.205,110.551)
C1': (25.419,143.754,109.010)
C5': (23.520,140.720,108.732)
O4': (24.892,142.657,108.291)
C8: (23.331,145.025,108.287)
O2': (26.822,142.974,110.745)
C6: (24.316,148.382,108.055)
C5: (24.068,147.015,108.216)
C4: (25.113,146.237,108.677)
P: (20.898,140.767,108.685)
C4': (24.684,141.550,109.198)
C2': (25.492,143.367,110.487)
C2: (26.455,147.974,108.840)
N1: (25.544,148.843,108.389)
N3: (26.346,146.659,109.015)
N6: (23.414,149.243,107.584)
N7: (22.944,146.240,107.987)
N9: (24.641,144.946,108.685)
O5': (22.310,141.492,108.756)
O3': (24.867,141.270,111.552)
Image (generated by PyMOL):