Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01217:01218
Extra
PDB:
ATOM 1 O3' C A1216 12.927 104.420 113.278 1.00 49.63 O
ATOM 2 P G A1217 12.963 104.232 111.690 1.00 47.49 P
ATOM 3 OP1 G A1217 12.799 105.579 111.104 1.00 48.15 O
ATOM 4 OP2 G A1217 12.024 103.139 111.318 1.00 46.41 O
ATOM 5 O5' G A1217 14.452 103.760 111.388 1.00 48.71 O
ATOM 6 C5' G A1217 15.567 104.670 111.537 1.00 48.24 C
ATOM 7 C4' G A1217 16.864 103.949 111.254 1.00 46.87 C
ATOM 8 O4' G A1217 17.030 102.869 112.211 1.00 46.75 O
ATOM 9 C3' G A1217 16.899 103.274 109.894 1.00 45.85 C
ATOM 10 O3' G A1217 17.333 104.181 108.896 1.00 44.07 O
ATOM 11 C2' G A1217 17.862 102.118 110.103 1.00 46.44 C
ATOM 12 O2' G A1217 19.212 102.509 109.975 1.00 46.76 O
ATOM 13 C1' G A1217 17.553 101.727 111.554 1.00 46.92 C
ATOM 14 N9 G A1217 16.577 100.654 111.697 1.00 47.52 N
ATOM 15 C8 G A1217 15.207 100.769 111.661 1.00 48.08 C
ATOM 16 N7 G A1217 14.594 99.637 111.866 1.00 47.87 N
ATOM 17 C5 G A1217 15.616 98.721 112.045 1.00 47.25 C
ATOM 18 C6 G A1217 15.560 97.345 112.323 1.00 49.04 C
ATOM 19 O6 G A1217 14.557 96.639 112.493 1.00 52.66 O
ATOM 20 N1 G A1217 16.836 96.786 112.410 1.00 48.82 N
ATOM 21 C2 G A1217 18.015 97.479 112.260 1.00 48.27 C
ATOM 22 N2 G A1217 19.145 96.775 112.374 1.00 46.10 N
ATOM 23 N3 G A1217 18.076 98.775 112.016 1.00 48.97 N
ATOM 24 C4 G A1217 16.847 99.329 111.922 1.00 48.42 C
ATOM 25 P A A1218 16.710 104.091 107.423 1.00 46.46 P
ATOM 26 OP1 A A1218 16.807 105.432 106.782 1.00 42.29 O
ATOM 27 OP2 A A1218 15.395 103.396 107.487 1.00 47.22 O
ATOM 28 O5' A A1218 17.695 103.113 106.660 1.00 45.82 O
TER
ATOM 1 O3' G B1217 17.333 104.181 108.896 1.00 44.07 O
ATOM 2 P A B1218 16.710 104.091 107.423 1.00 46.46 P
ATOM 3 OP1 A B1218 16.807 105.432 106.782 1.00 42.29 O
ATOM 4 OP2 A B1218 15.395 103.396 107.487 1.00 47.22 O
ATOM 5 O5' A B1218 17.695 103.113 106.660 1.00 45.82 O
ATOM 6 C5' A B1218 17.305 102.532 105.419 1.00 44.97 C
ATOM 7 C4' A B1218 18.489 102.417 104.501 1.00 42.67 C
ATOM 8 O4' A B1218 19.488 101.551 105.092 1.00 42.46 O
ATOM 9 C3' A B1218 18.157 101.756 103.187 1.00 42.07 C
ATOM 10 O3' A B1218 17.635 102.727 102.302 1.00 42.84 O
ATOM 11 C2' A B1218 19.504 101.210 102.761 1.00 41.30 C
ATOM 12 O2' A B1218 20.342 102.253 102.314 1.00 41.41 O
ATOM 13 C1' A B1218 20.041 100.713 104.099 1.00 40.16 C
ATOM 14 N9 A B1218 19.668 99.345 104.441 1.00 39.98 N
ATOM 15 C8 A B1218 18.588 98.945 105.189 1.00 40.92 C
ATOM 16 N7 A B1218 18.543 97.653 105.404 1.00 41.33 N
ATOM 17 C5 A B1218 19.656 97.165 104.738 1.00 38.63 C
ATOM 18 C6 A B1218 20.170 95.876 104.595 1.00 37.16 C
ATOM 19 N6 A B1218 19.627 94.799 105.158 1.00 35.64 N
ATOM 20 N1 A B1218 21.284 95.725 103.850 1.00 39.22 N
ATOM 21 C2 A B1218 21.845 96.813 103.305 1.00 39.62 C
ATOM 22 N3 A B1218 21.463 98.083 103.382 1.00 38.88 N
ATOM 23 C4 A B1218 20.347 98.194 104.121 1.00 39.97 C
ATOM 24 P G B1219 16.414 102.347 101.339 1.00 42.18 P
ATOM 25 OP1 G B1219 15.794 103.634 100.967 1.00 43.58 O
ATOM 26 OP2 G B1219 15.588 101.280 101.965 1.00 41.42 O
ATOM 27 O5' G B1219 17.130 101.726 100.064 1.00 41.70 O
TER
ATOM 2 P G A1217 12.963 104.232 111.690 1.00 47.49 P
ATOM 3 OP1 G A1217 12.799 105.579 111.104 1.00 48.15 O
ATOM 4 OP2 G A1217 12.024 103.139 111.318 1.00 46.41 O
ATOM 5 O5' G A1217 14.452 103.760 111.388 1.00 48.71 O
ATOM 6 C5' G A1217 15.567 104.670 111.537 1.00 48.24 C
ATOM 7 C4' G A1217 16.864 103.949 111.254 1.00 46.87 C
ATOM 8 O4' G A1217 17.030 102.869 112.211 1.00 46.75 O
ATOM 9 C3' G A1217 16.899 103.274 109.894 1.00 45.85 C
ATOM 10 O3' G A1217 17.333 104.181 108.896 1.00 44.07 O
ATOM 11 C2' G A1217 17.862 102.118 110.103 1.00 46.44 C
ATOM 12 O2' G A1217 19.212 102.509 109.975 1.00 46.76 O
ATOM 13 C1' G A1217 17.553 101.727 111.554 1.00 46.92 C
ATOM 14 N9 G A1217 16.577 100.654 111.697 1.00 47.52 N
ATOM 15 C8 G A1217 15.207 100.769 111.661 1.00 48.08 C
ATOM 16 N7 G A1217 14.594 99.637 111.866 1.00 47.87 N
ATOM 17 C5 G A1217 15.616 98.721 112.045 1.00 47.25 C
ATOM 18 C6 G A1217 15.560 97.345 112.323 1.00 49.04 C
ATOM 19 O6 G A1217 14.557 96.639 112.493 1.00 52.66 O
ATOM 20 N1 G A1217 16.836 96.786 112.410 1.00 48.82 N
ATOM 21 C2 G A1217 18.015 97.479 112.260 1.00 48.27 C
ATOM 22 N2 G A1217 19.145 96.775 112.374 1.00 46.10 N
ATOM 23 N3 G A1217 18.076 98.775 112.016 1.00 48.97 N
ATOM 24 C4 G A1217 16.847 99.329 111.922 1.00 48.42 C
ATOM 25 P A A1218 16.710 104.091 107.423 1.00 46.46 P
ATOM 26 OP1 A A1218 16.807 105.432 106.782 1.00 42.29 O
ATOM 27 OP2 A A1218 15.395 103.396 107.487 1.00 47.22 O
ATOM 28 O5' A A1218 17.695 103.113 106.660 1.00 45.82 O
TER
ATOM 1 O3' G B1217 17.333 104.181 108.896 1.00 44.07 O
ATOM 2 P A B1218 16.710 104.091 107.423 1.00 46.46 P
ATOM 3 OP1 A B1218 16.807 105.432 106.782 1.00 42.29 O
ATOM 4 OP2 A B1218 15.395 103.396 107.487 1.00 47.22 O
ATOM 5 O5' A B1218 17.695 103.113 106.660 1.00 45.82 O
ATOM 6 C5' A B1218 17.305 102.532 105.419 1.00 44.97 C
ATOM 7 C4' A B1218 18.489 102.417 104.501 1.00 42.67 C
ATOM 8 O4' A B1218 19.488 101.551 105.092 1.00 42.46 O
ATOM 9 C3' A B1218 18.157 101.756 103.187 1.00 42.07 C
ATOM 10 O3' A B1218 17.635 102.727 102.302 1.00 42.84 O
ATOM 11 C2' A B1218 19.504 101.210 102.761 1.00 41.30 C
ATOM 12 O2' A B1218 20.342 102.253 102.314 1.00 41.41 O
ATOM 13 C1' A B1218 20.041 100.713 104.099 1.00 40.16 C
ATOM 14 N9 A B1218 19.668 99.345 104.441 1.00 39.98 N
ATOM 15 C8 A B1218 18.588 98.945 105.189 1.00 40.92 C
ATOM 16 N7 A B1218 18.543 97.653 105.404 1.00 41.33 N
ATOM 17 C5 A B1218 19.656 97.165 104.738 1.00 38.63 C
ATOM 18 C6 A B1218 20.170 95.876 104.595 1.00 37.16 C
ATOM 19 N6 A B1218 19.627 94.799 105.158 1.00 35.64 N
ATOM 20 N1 A B1218 21.284 95.725 103.850 1.00 39.22 N
ATOM 21 C2 A B1218 21.845 96.813 103.305 1.00 39.62 C
ATOM 22 N3 A B1218 21.463 98.083 103.382 1.00 38.88 N
ATOM 23 C4 A B1218 20.347 98.194 104.121 1.00 39.97 C
ATOM 24 P G B1219 16.414 102.347 101.339 1.00 42.18 P
ATOM 25 OP1 G B1219 15.794 103.634 100.967 1.00 43.58 O
ATOM 26 OP2 G B1219 15.588 101.280 101.965 1.00 41.42 O
ATOM 27 O5' G B1219 17.130 101.726 100.064 1.00 41.70 O
TER
Atoms:
OP1: (12.799,105.579,111.104)
OP2: (12.024,103.139,111.318)
C3': (16.899,103.274,109.894)
C1': (17.553,101.727,111.554)
C5': (15.567,104.670,111.537)
O6: (14.557,96.639,112.493)
O4': (17.030,102.869,112.211)
C8: (15.207,100.769,111.661)
C2: (18.015,97.479,112.260)
C6: (15.560,97.345,112.323)
C5: (15.616,98.721,112.045)
C4: (16.847,99.329,111.922)
P: (12.963,104.232,111.690)
C4': (16.864,103.949,111.254)
C2': (17.862,102.118,110.103)
O2': (19.212,102.509,109.975)
N1: (16.836,96.786,112.410)
N2: (19.145,96.775,112.374)
N3: (18.076,98.775,112.016)
N7: (14.594,99.637,111.866)
N9: (16.577,100.654,111.697)
O5': (14.452,103.760,111.388)
O3': (17.333,104.181,108.896)
OP2: (12.024,103.139,111.318)
C3': (16.899,103.274,109.894)
C1': (17.553,101.727,111.554)
C5': (15.567,104.670,111.537)
O6: (14.557,96.639,112.493)
O4': (17.030,102.869,112.211)
C8: (15.207,100.769,111.661)
C2: (18.015,97.479,112.260)
C6: (15.560,97.345,112.323)
C5: (15.616,98.721,112.045)
C4: (16.847,99.329,111.922)
P: (12.963,104.232,111.690)
C4': (16.864,103.949,111.254)
C2': (17.862,102.118,110.103)
O2': (19.212,102.509,109.975)
N1: (16.836,96.786,112.410)
N2: (19.145,96.775,112.374)
N3: (18.076,98.775,112.016)
N7: (14.594,99.637,111.866)
N9: (16.577,100.654,111.697)
O5': (14.452,103.760,111.388)
O3': (17.333,104.181,108.896)
OP1: (16.807,105.432,106.782)
OP2: (15.395,103.396,107.487)
C3': (18.157,101.756,103.187)
C1': (20.041,100.713,104.099)
C5': (17.305,102.532,105.419)
O4': (19.488,101.551,105.092)
C8: (18.588,98.945,105.189)
O2': (20.342,102.253,102.314)
C6: (20.170,95.876,104.595)
C5: (19.656,97.165,104.738)
C4: (20.347,98.194,104.121)
P: (16.710,104.091,107.423)
C4': (18.489,102.417,104.501)
C2': (19.504,101.210,102.761)
C2: (21.845,96.813,103.305)
N1: (21.284,95.725,103.850)
N3: (21.463,98.083,103.382)
N6: (19.627,94.799,105.158)
N7: (18.543,97.653,105.404)
N9: (19.668,99.345,104.441)
O5': (17.695,103.113,106.660)
O3': (17.635,102.727,102.302)
OP2: (15.395,103.396,107.487)
C3': (18.157,101.756,103.187)
C1': (20.041,100.713,104.099)
C5': (17.305,102.532,105.419)
O4': (19.488,101.551,105.092)
C8: (18.588,98.945,105.189)
O2': (20.342,102.253,102.314)
C6: (20.170,95.876,104.595)
C5: (19.656,97.165,104.738)
C4: (20.347,98.194,104.121)
P: (16.710,104.091,107.423)
C4': (18.489,102.417,104.501)
C2': (19.504,101.210,102.761)
C2: (21.845,96.813,103.305)
N1: (21.284,95.725,103.850)
N3: (21.463,98.083,103.382)
N6: (19.627,94.799,105.158)
N7: (18.543,97.653,105.404)
N9: (19.668,99.345,104.441)
O5': (17.695,103.113,106.660)
O3': (17.635,102.727,102.302)
Image (generated by PyMOL):