Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0519:0520
Extra
PDB:
ATOM 1 O3' C A 518 17.103 136.472 103.495 1.00 49.90 O
ATOM 2 P G A 519 16.855 137.538 104.673 1.00 50.56 P
ATOM 3 OP1 G A 519 16.628 136.778 105.920 1.00 51.47 O
ATOM 4 OP2 G A 519 15.849 138.530 104.219 1.00 49.93 O
ATOM 5 O5' G A 519 18.246 138.290 104.828 1.00 50.68 O
ATOM 6 C5' G A 519 19.450 137.572 105.142 1.00 49.49 C
ATOM 7 C4' G A 519 20.639 138.471 104.938 1.00 49.15 C
ATOM 8 O4' G A 519 20.643 138.939 103.562 1.00 50.37 O
ATOM 9 C3' G A 519 20.604 139.746 105.757 1.00 49.15 C
ATOM 10 O3' G A 519 21.103 139.514 107.067 1.00 48.29 O
ATOM 11 C2' G A 519 21.476 140.682 104.935 1.00 51.47 C
ATOM 12 O2' G A 519 22.854 140.419 105.091 1.00 54.67 O
ATOM 13 C1' G A 519 21.074 140.289 103.514 1.00 52.04 C
ATOM 14 N9 G A 519 19.988 141.103 102.975 1.00 54.31 N
ATOM 15 C8 G A 519 18.647 140.799 102.961 1.00 55.37 C
ATOM 16 N7 G A 519 17.918 141.723 102.399 1.00 55.66 N
ATOM 17 C5 G A 519 18.831 142.696 102.022 1.00 56.51 C
ATOM 18 C6 G A 519 18.630 143.929 101.370 1.00 58.13 C
ATOM 19 O6 G A 519 17.570 144.423 100.975 1.00 62.55 O
ATOM 20 N1 G A 519 19.826 144.612 101.182 1.00 57.15 N
ATOM 21 C2 G A 519 21.059 144.159 101.567 1.00 55.71 C
ATOM 22 N2 G A 519 22.094 144.955 101.280 1.00 56.32 N
ATOM 23 N3 G A 519 21.262 143.009 102.181 1.00 55.50 N
ATOM 24 C4 G A 519 20.112 142.332 102.375 1.00 55.36 C
ATOM 25 P A A 520 20.837 140.590 108.231 1.00 48.08 P
ATOM 26 OP1 A A 520 20.566 139.828 109.476 1.00 47.60 O
ATOM 27 OP2 A A 520 19.836 141.556 107.740 1.00 48.86 O
ATOM 28 O5' A A 520 22.238 141.330 108.385 1.00 45.70 O
TER
ATOM 1 O3' G B 519 21.103 139.514 107.067 1.00 48.29 O
ATOM 2 P A B 520 20.837 140.590 108.231 1.00 48.08 P
ATOM 3 OP1 A B 520 20.566 139.828 109.476 1.00 47.60 O
ATOM 4 OP2 A B 520 19.836 141.556 107.740 1.00 48.86 O
ATOM 5 O5' A B 520 22.238 141.330 108.385 1.00 45.70 O
ATOM 6 C5' A B 520 23.460 140.572 108.341 1.00 45.03 C
ATOM 7 C4' A B 520 24.618 141.400 108.825 1.00 44.16 C
ATOM 8 O4' A B 520 24.820 142.515 107.938 1.00 45.07 O
ATOM 9 C3' A B 520 24.455 142.034 110.192 1.00 43.21 C
ATOM 10 O3' A B 520 24.843 141.096 111.177 1.00 42.97 O
ATOM 11 C2' A B 520 25.447 143.185 110.136 1.00 43.65 C
ATOM 12 O2' A B 520 26.767 142.752 110.372 1.00 43.87 O
ATOM 13 C1' A B 520 25.356 143.598 108.668 1.00 44.73 C
ATOM 14 N9 A B 520 24.569 144.789 108.368 1.00 45.86 N
ATOM 15 C8 A B 520 23.236 144.880 108.069 1.00 46.47 C
ATOM 16 N7 A B 520 22.846 146.091 107.761 1.00 46.37 N
ATOM 17 C5 A B 520 23.997 146.849 107.880 1.00 46.29 C
ATOM 18 C6 A B 520 24.255 148.205 107.666 1.00 47.05 C
ATOM 19 N6 A B 520 23.339 149.071 107.236 1.00 47.68 N
ATOM 20 N1 A B 520 25.507 148.650 107.899 1.00 47.39 N
ATOM 21 C2 A B 520 26.435 147.773 108.300 1.00 47.15 C
ATOM 22 N3 A B 520 26.320 146.468 108.514 1.00 46.60 N
ATOM 23 C4 A B 520 25.060 146.064 108.282 1.00 46.67 C
ATOM 24 P U B 521 23.808 140.655 112.307 1.00 42.57 P
ATOM 25 OP1 U B 521 22.504 140.380 111.667 1.00 43.08 O
ATOM 26 OP2 U B 521 23.901 141.681 113.362 1.00 44.29 O
ATOM 27 O5' U B 521 24.410 139.290 112.855 1.00 39.86 O
TER
ATOM 2 P G A 519 16.855 137.538 104.673 1.00 50.56 P
ATOM 3 OP1 G A 519 16.628 136.778 105.920 1.00 51.47 O
ATOM 4 OP2 G A 519 15.849 138.530 104.219 1.00 49.93 O
ATOM 5 O5' G A 519 18.246 138.290 104.828 1.00 50.68 O
ATOM 6 C5' G A 519 19.450 137.572 105.142 1.00 49.49 C
ATOM 7 C4' G A 519 20.639 138.471 104.938 1.00 49.15 C
ATOM 8 O4' G A 519 20.643 138.939 103.562 1.00 50.37 O
ATOM 9 C3' G A 519 20.604 139.746 105.757 1.00 49.15 C
ATOM 10 O3' G A 519 21.103 139.514 107.067 1.00 48.29 O
ATOM 11 C2' G A 519 21.476 140.682 104.935 1.00 51.47 C
ATOM 12 O2' G A 519 22.854 140.419 105.091 1.00 54.67 O
ATOM 13 C1' G A 519 21.074 140.289 103.514 1.00 52.04 C
ATOM 14 N9 G A 519 19.988 141.103 102.975 1.00 54.31 N
ATOM 15 C8 G A 519 18.647 140.799 102.961 1.00 55.37 C
ATOM 16 N7 G A 519 17.918 141.723 102.399 1.00 55.66 N
ATOM 17 C5 G A 519 18.831 142.696 102.022 1.00 56.51 C
ATOM 18 C6 G A 519 18.630 143.929 101.370 1.00 58.13 C
ATOM 19 O6 G A 519 17.570 144.423 100.975 1.00 62.55 O
ATOM 20 N1 G A 519 19.826 144.612 101.182 1.00 57.15 N
ATOM 21 C2 G A 519 21.059 144.159 101.567 1.00 55.71 C
ATOM 22 N2 G A 519 22.094 144.955 101.280 1.00 56.32 N
ATOM 23 N3 G A 519 21.262 143.009 102.181 1.00 55.50 N
ATOM 24 C4 G A 519 20.112 142.332 102.375 1.00 55.36 C
ATOM 25 P A A 520 20.837 140.590 108.231 1.00 48.08 P
ATOM 26 OP1 A A 520 20.566 139.828 109.476 1.00 47.60 O
ATOM 27 OP2 A A 520 19.836 141.556 107.740 1.00 48.86 O
ATOM 28 O5' A A 520 22.238 141.330 108.385 1.00 45.70 O
TER
ATOM 1 O3' G B 519 21.103 139.514 107.067 1.00 48.29 O
ATOM 2 P A B 520 20.837 140.590 108.231 1.00 48.08 P
ATOM 3 OP1 A B 520 20.566 139.828 109.476 1.00 47.60 O
ATOM 4 OP2 A B 520 19.836 141.556 107.740 1.00 48.86 O
ATOM 5 O5' A B 520 22.238 141.330 108.385 1.00 45.70 O
ATOM 6 C5' A B 520 23.460 140.572 108.341 1.00 45.03 C
ATOM 7 C4' A B 520 24.618 141.400 108.825 1.00 44.16 C
ATOM 8 O4' A B 520 24.820 142.515 107.938 1.00 45.07 O
ATOM 9 C3' A B 520 24.455 142.034 110.192 1.00 43.21 C
ATOM 10 O3' A B 520 24.843 141.096 111.177 1.00 42.97 O
ATOM 11 C2' A B 520 25.447 143.185 110.136 1.00 43.65 C
ATOM 12 O2' A B 520 26.767 142.752 110.372 1.00 43.87 O
ATOM 13 C1' A B 520 25.356 143.598 108.668 1.00 44.73 C
ATOM 14 N9 A B 520 24.569 144.789 108.368 1.00 45.86 N
ATOM 15 C8 A B 520 23.236 144.880 108.069 1.00 46.47 C
ATOM 16 N7 A B 520 22.846 146.091 107.761 1.00 46.37 N
ATOM 17 C5 A B 520 23.997 146.849 107.880 1.00 46.29 C
ATOM 18 C6 A B 520 24.255 148.205 107.666 1.00 47.05 C
ATOM 19 N6 A B 520 23.339 149.071 107.236 1.00 47.68 N
ATOM 20 N1 A B 520 25.507 148.650 107.899 1.00 47.39 N
ATOM 21 C2 A B 520 26.435 147.773 108.300 1.00 47.15 C
ATOM 22 N3 A B 520 26.320 146.468 108.514 1.00 46.60 N
ATOM 23 C4 A B 520 25.060 146.064 108.282 1.00 46.67 C
ATOM 24 P U B 521 23.808 140.655 112.307 1.00 42.57 P
ATOM 25 OP1 U B 521 22.504 140.380 111.667 1.00 43.08 O
ATOM 26 OP2 U B 521 23.901 141.681 113.362 1.00 44.29 O
ATOM 27 O5' U B 521 24.410 139.290 112.855 1.00 39.86 O
TER
Atoms:
OP1: (16.628,136.778,105.920)
OP2: (15.849,138.530,104.219)
C3': (20.604,139.746,105.757)
C1': (21.074,140.289,103.514)
C5': (19.450,137.572,105.142)
O6: (17.570,144.423,100.975)
O4': (20.643,138.939,103.562)
C8: (18.647,140.799,102.961)
C2: (21.059,144.159,101.567)
C6: (18.630,143.929,101.370)
C5: (18.831,142.696,102.022)
C4: (20.112,142.332,102.375)
P: (16.855,137.538,104.673)
C4': (20.639,138.471,104.938)
C2': (21.476,140.682,104.935)
O2': (22.854,140.419,105.091)
N1: (19.826,144.612,101.182)
N2: (22.094,144.955,101.280)
N3: (21.262,143.009,102.181)
N7: (17.918,141.723,102.399)
N9: (19.988,141.103,102.975)
O5': (18.246,138.290,104.828)
O3': (21.103,139.514,107.067)
OP2: (15.849,138.530,104.219)
C3': (20.604,139.746,105.757)
C1': (21.074,140.289,103.514)
C5': (19.450,137.572,105.142)
O6: (17.570,144.423,100.975)
O4': (20.643,138.939,103.562)
C8: (18.647,140.799,102.961)
C2: (21.059,144.159,101.567)
C6: (18.630,143.929,101.370)
C5: (18.831,142.696,102.022)
C4: (20.112,142.332,102.375)
P: (16.855,137.538,104.673)
C4': (20.639,138.471,104.938)
C2': (21.476,140.682,104.935)
O2': (22.854,140.419,105.091)
N1: (19.826,144.612,101.182)
N2: (22.094,144.955,101.280)
N3: (21.262,143.009,102.181)
N7: (17.918,141.723,102.399)
N9: (19.988,141.103,102.975)
O5': (18.246,138.290,104.828)
O3': (21.103,139.514,107.067)
OP1: (20.566,139.828,109.476)
OP2: (19.836,141.556,107.740)
C3': (24.455,142.034,110.192)
C1': (25.356,143.598,108.668)
C5': (23.460,140.572,108.341)
O4': (24.820,142.515,107.938)
C8: (23.236,144.880,108.069)
O2': (26.767,142.752,110.372)
C6: (24.255,148.205,107.666)
C5: (23.997,146.849,107.880)
C4: (25.060,146.064,108.282)
P: (20.837,140.590,108.231)
C4': (24.618,141.400,108.825)
C2': (25.447,143.185,110.136)
C2: (26.435,147.773,108.300)
N1: (25.507,148.650,107.899)
N3: (26.320,146.468,108.514)
N6: (23.339,149.071,107.236)
N7: (22.846,146.091,107.761)
N9: (24.569,144.789,108.368)
O5': (22.238,141.330,108.385)
O3': (24.843,141.096,111.177)
OP2: (19.836,141.556,107.740)
C3': (24.455,142.034,110.192)
C1': (25.356,143.598,108.668)
C5': (23.460,140.572,108.341)
O4': (24.820,142.515,107.938)
C8: (23.236,144.880,108.069)
O2': (26.767,142.752,110.372)
C6: (24.255,148.205,107.666)
C5: (23.997,146.849,107.880)
C4: (25.060,146.064,108.282)
P: (20.837,140.590,108.231)
C4': (24.618,141.400,108.825)
C2': (25.447,143.185,110.136)
C2: (26.435,147.773,108.300)
N1: (25.507,148.650,107.899)
N3: (26.320,146.468,108.514)
N6: (23.339,149.071,107.236)
N7: (22.846,146.091,107.761)
N9: (24.569,144.789,108.368)
O5': (22.238,141.330,108.385)
O3': (24.843,141.096,111.177)
Image (generated by PyMOL):