Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01217:01218
Extra
PDB:
ATOM 1 O3' C A1216 12.905 104.204 112.934 1.00 48.81 O
ATOM 2 P G A1217 12.898 104.027 111.343 1.00 47.40 P
ATOM 3 OP1 G A1217 12.707 105.388 110.772 1.00 45.43 O
ATOM 4 OP2 G A1217 11.957 102.929 110.985 1.00 44.99 O
ATOM 5 O5' G A1217 14.380 103.556 111.010 1.00 47.88 O
ATOM 6 C5' G A1217 15.501 104.453 111.166 1.00 47.11 C
ATOM 7 C4' G A1217 16.785 103.712 110.900 1.00 45.44 C
ATOM 8 O4' G A1217 16.917 102.645 111.873 1.00 45.34 O
ATOM 9 C3' G A1217 16.817 103.018 109.549 1.00 44.85 C
ATOM 10 O3' G A1217 17.286 103.909 108.546 1.00 43.29 O
ATOM 11 C2' G A1217 17.764 101.853 109.788 1.00 45.36 C
ATOM 12 O2' G A1217 19.118 102.239 109.686 1.00 46.65 O
ATOM 13 C1' G A1217 17.434 101.488 111.240 1.00 46.03 C
ATOM 14 N9 G A1217 16.452 100.421 111.394 1.00 46.04 N
ATOM 15 C8 G A1217 15.085 100.546 111.389 1.00 47.02 C
ATOM 16 N7 G A1217 14.467 99.413 111.582 1.00 48.06 N
ATOM 17 C5 G A1217 15.489 98.486 111.720 1.00 47.82 C
ATOM 18 C6 G A1217 15.436 97.089 111.960 1.00 49.00 C
ATOM 19 O6 G A1217 14.442 96.371 112.122 1.00 50.67 O
ATOM 20 N1 G A1217 16.711 96.533 112.016 1.00 48.55 N
ATOM 21 C2 G A1217 17.884 97.233 111.872 1.00 48.03 C
ATOM 22 N2 G A1217 19.012 96.525 111.961 1.00 48.02 N
ATOM 23 N3 G A1217 17.945 98.534 111.658 1.00 47.48 N
ATOM 24 C4 G A1217 16.720 99.093 111.594 1.00 47.06 C
ATOM 25 P A A1218 16.635 103.878 107.080 1.00 43.16 P
ATOM 26 OP1 A A1218 16.694 105.259 106.534 1.00 41.79 O
ATOM 27 OP2 A A1218 15.331 103.168 107.134 1.00 44.77 O
ATOM 28 O5' A A1218 17.634 102.965 106.248 1.00 43.11 O
TER
ATOM 1 O3' G B1217 17.286 103.909 108.546 1.00 43.29 O
ATOM 2 P A B1218 16.635 103.878 107.080 1.00 43.16 P
ATOM 3 OP1 A B1218 16.694 105.259 106.534 1.00 41.79 O
ATOM 4 OP2 A B1218 15.331 103.168 107.134 1.00 44.77 O
ATOM 5 O5' A B1218 17.634 102.965 106.248 1.00 43.11 O
ATOM 6 C5' A B1218 17.212 102.366 105.019 1.00 42.30 C
ATOM 7 C4' A B1218 18.386 102.181 104.093 1.00 41.48 C
ATOM 8 O4' A B1218 19.372 101.314 104.705 1.00 41.30 O
ATOM 9 C3' A B1218 18.021 101.489 102.797 1.00 41.55 C
ATOM 10 O3' A B1218 17.553 102.452 101.867 1.00 41.08 O
ATOM 11 C2' A B1218 19.339 100.863 102.380 1.00 41.95 C
ATOM 12 O2' A B1218 20.207 101.824 101.819 1.00 45.70 O
ATOM 13 C1' A B1218 19.902 100.433 103.734 1.00 40.75 C
ATOM 14 N9 A B1218 19.534 99.077 104.127 1.00 39.91 N
ATOM 15 C8 A B1218 18.461 98.699 104.891 1.00 40.46 C
ATOM 16 N7 A B1218 18.404 97.412 105.121 1.00 41.53 N
ATOM 17 C5 A B1218 19.507 96.905 104.453 1.00 40.80 C
ATOM 18 C6 A B1218 20.004 95.601 104.308 1.00 40.72 C
ATOM 19 N6 A B1218 19.441 94.529 104.867 1.00 40.74 N
ATOM 20 N1 A B1218 21.114 95.432 103.561 1.00 41.89 N
ATOM 21 C2 A B1218 21.681 96.510 103.006 1.00 42.52 C
ATOM 22 N3 A B1218 21.312 97.788 103.077 1.00 42.18 N
ATOM 23 C4 A B1218 20.205 97.919 103.825 1.00 40.74 C
ATOM 24 P G B1219 16.262 102.137 100.971 1.00 42.07 P
ATOM 25 OP1 G B1219 15.564 103.430 100.759 1.00 42.28 O
ATOM 26 OP2 G B1219 15.525 100.992 101.588 1.00 40.49 O
ATOM 27 O5' G B1219 16.883 101.666 99.584 1.00 38.71 O
TER
ATOM 2 P G A1217 12.898 104.027 111.343 1.00 47.40 P
ATOM 3 OP1 G A1217 12.707 105.388 110.772 1.00 45.43 O
ATOM 4 OP2 G A1217 11.957 102.929 110.985 1.00 44.99 O
ATOM 5 O5' G A1217 14.380 103.556 111.010 1.00 47.88 O
ATOM 6 C5' G A1217 15.501 104.453 111.166 1.00 47.11 C
ATOM 7 C4' G A1217 16.785 103.712 110.900 1.00 45.44 C
ATOM 8 O4' G A1217 16.917 102.645 111.873 1.00 45.34 O
ATOM 9 C3' G A1217 16.817 103.018 109.549 1.00 44.85 C
ATOM 10 O3' G A1217 17.286 103.909 108.546 1.00 43.29 O
ATOM 11 C2' G A1217 17.764 101.853 109.788 1.00 45.36 C
ATOM 12 O2' G A1217 19.118 102.239 109.686 1.00 46.65 O
ATOM 13 C1' G A1217 17.434 101.488 111.240 1.00 46.03 C
ATOM 14 N9 G A1217 16.452 100.421 111.394 1.00 46.04 N
ATOM 15 C8 G A1217 15.085 100.546 111.389 1.00 47.02 C
ATOM 16 N7 G A1217 14.467 99.413 111.582 1.00 48.06 N
ATOM 17 C5 G A1217 15.489 98.486 111.720 1.00 47.82 C
ATOM 18 C6 G A1217 15.436 97.089 111.960 1.00 49.00 C
ATOM 19 O6 G A1217 14.442 96.371 112.122 1.00 50.67 O
ATOM 20 N1 G A1217 16.711 96.533 112.016 1.00 48.55 N
ATOM 21 C2 G A1217 17.884 97.233 111.872 1.00 48.03 C
ATOM 22 N2 G A1217 19.012 96.525 111.961 1.00 48.02 N
ATOM 23 N3 G A1217 17.945 98.534 111.658 1.00 47.48 N
ATOM 24 C4 G A1217 16.720 99.093 111.594 1.00 47.06 C
ATOM 25 P A A1218 16.635 103.878 107.080 1.00 43.16 P
ATOM 26 OP1 A A1218 16.694 105.259 106.534 1.00 41.79 O
ATOM 27 OP2 A A1218 15.331 103.168 107.134 1.00 44.77 O
ATOM 28 O5' A A1218 17.634 102.965 106.248 1.00 43.11 O
TER
ATOM 1 O3' G B1217 17.286 103.909 108.546 1.00 43.29 O
ATOM 2 P A B1218 16.635 103.878 107.080 1.00 43.16 P
ATOM 3 OP1 A B1218 16.694 105.259 106.534 1.00 41.79 O
ATOM 4 OP2 A B1218 15.331 103.168 107.134 1.00 44.77 O
ATOM 5 O5' A B1218 17.634 102.965 106.248 1.00 43.11 O
ATOM 6 C5' A B1218 17.212 102.366 105.019 1.00 42.30 C
ATOM 7 C4' A B1218 18.386 102.181 104.093 1.00 41.48 C
ATOM 8 O4' A B1218 19.372 101.314 104.705 1.00 41.30 O
ATOM 9 C3' A B1218 18.021 101.489 102.797 1.00 41.55 C
ATOM 10 O3' A B1218 17.553 102.452 101.867 1.00 41.08 O
ATOM 11 C2' A B1218 19.339 100.863 102.380 1.00 41.95 C
ATOM 12 O2' A B1218 20.207 101.824 101.819 1.00 45.70 O
ATOM 13 C1' A B1218 19.902 100.433 103.734 1.00 40.75 C
ATOM 14 N9 A B1218 19.534 99.077 104.127 1.00 39.91 N
ATOM 15 C8 A B1218 18.461 98.699 104.891 1.00 40.46 C
ATOM 16 N7 A B1218 18.404 97.412 105.121 1.00 41.53 N
ATOM 17 C5 A B1218 19.507 96.905 104.453 1.00 40.80 C
ATOM 18 C6 A B1218 20.004 95.601 104.308 1.00 40.72 C
ATOM 19 N6 A B1218 19.441 94.529 104.867 1.00 40.74 N
ATOM 20 N1 A B1218 21.114 95.432 103.561 1.00 41.89 N
ATOM 21 C2 A B1218 21.681 96.510 103.006 1.00 42.52 C
ATOM 22 N3 A B1218 21.312 97.788 103.077 1.00 42.18 N
ATOM 23 C4 A B1218 20.205 97.919 103.825 1.00 40.74 C
ATOM 24 P G B1219 16.262 102.137 100.971 1.00 42.07 P
ATOM 25 OP1 G B1219 15.564 103.430 100.759 1.00 42.28 O
ATOM 26 OP2 G B1219 15.525 100.992 101.588 1.00 40.49 O
ATOM 27 O5' G B1219 16.883 101.666 99.584 1.00 38.71 O
TER
Atoms:
OP1: (12.707,105.388,110.772)
OP2: (11.957,102.929,110.985)
C3': (16.817,103.018,109.549)
C1': (17.434,101.488,111.240)
C5': (15.501,104.453,111.166)
O6: (14.442,96.371,112.122)
O4': (16.917,102.645,111.873)
C8: (15.085,100.546,111.389)
C2: (17.884,97.233,111.872)
C6: (15.436,97.089,111.960)
C5: (15.489,98.486,111.720)
C4: (16.720,99.093,111.594)
P: (12.898,104.027,111.343)
C4': (16.785,103.712,110.900)
C2': (17.764,101.853,109.788)
O2': (19.118,102.239,109.686)
N1: (16.711,96.533,112.016)
N2: (19.012,96.525,111.961)
N3: (17.945,98.534,111.658)
N7: (14.467,99.413,111.582)
N9: (16.452,100.421,111.394)
O5': (14.380,103.556,111.010)
O3': (17.286,103.909,108.546)
OP2: (11.957,102.929,110.985)
C3': (16.817,103.018,109.549)
C1': (17.434,101.488,111.240)
C5': (15.501,104.453,111.166)
O6: (14.442,96.371,112.122)
O4': (16.917,102.645,111.873)
C8: (15.085,100.546,111.389)
C2: (17.884,97.233,111.872)
C6: (15.436,97.089,111.960)
C5: (15.489,98.486,111.720)
C4: (16.720,99.093,111.594)
P: (12.898,104.027,111.343)
C4': (16.785,103.712,110.900)
C2': (17.764,101.853,109.788)
O2': (19.118,102.239,109.686)
N1: (16.711,96.533,112.016)
N2: (19.012,96.525,111.961)
N3: (17.945,98.534,111.658)
N7: (14.467,99.413,111.582)
N9: (16.452,100.421,111.394)
O5': (14.380,103.556,111.010)
O3': (17.286,103.909,108.546)
OP1: (16.694,105.259,106.534)
OP2: (15.331,103.168,107.134)
C3': (18.021,101.489,102.797)
C1': (19.902,100.433,103.734)
C5': (17.212,102.366,105.019)
O4': (19.372,101.314,104.705)
C8: (18.461,98.699,104.891)
O2': (20.207,101.824,101.819)
C6: (20.004,95.601,104.308)
C5: (19.507,96.905,104.453)
C4: (20.205,97.919,103.825)
P: (16.635,103.878,107.080)
C4': (18.386,102.181,104.093)
C2': (19.339,100.863,102.380)
C2: (21.681,96.510,103.006)
N1: (21.114,95.432,103.561)
N3: (21.312,97.788,103.077)
N6: (19.441,94.529,104.867)
N7: (18.404,97.412,105.121)
N9: (19.534,99.077,104.127)
O5': (17.634,102.965,106.248)
O3': (17.553,102.452,101.867)
OP2: (15.331,103.168,107.134)
C3': (18.021,101.489,102.797)
C1': (19.902,100.433,103.734)
C5': (17.212,102.366,105.019)
O4': (19.372,101.314,104.705)
C8: (18.461,98.699,104.891)
O2': (20.207,101.824,101.819)
C6: (20.004,95.601,104.308)
C5: (19.507,96.905,104.453)
C4: (20.205,97.919,103.825)
P: (16.635,103.878,107.080)
C4': (18.386,102.181,104.093)
C2': (19.339,100.863,102.380)
C2: (21.681,96.510,103.006)
N1: (21.114,95.432,103.561)
N3: (21.312,97.788,103.077)
N6: (19.441,94.529,104.867)
N7: (18.404,97.412,105.121)
N9: (19.534,99.077,104.127)
O5': (17.634,102.965,106.248)
O3': (17.553,102.452,101.867)
Image (generated by PyMOL):