Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:X30:X31
Extra
PDB:
ATOM 1 O3' A A 29 -7.482 -5.918 13.288 1.00 39.07 O
ATOM 2 P G A 30 -8.711 -6.907 13.586 1.00 40.41 P
ATOM 3 OP1 G A 30 -8.784 -7.732 12.353 1.00 47.70 O
ATOM 4 OP2 G A 30 -9.880 -6.074 13.959 1.00 38.57 O
ATOM 5 O5' G A 30 -8.306 -7.759 14.880 1.00 44.77 O
ATOM 6 C5' G A 30 -7.118 -8.527 15.000 1.00 39.17 C
ATOM 7 C4' G A 30 -6.632 -8.632 16.432 1.00 36.22 C
ATOM 8 O4' G A 30 -6.709 -7.344 17.093 1.00 36.76 O
ATOM 9 C3' G A 30 -7.365 -9.564 17.391 1.00 32.34 C
ATOM 10 O3' G A 30 -7.007 -10.917 17.188 1.00 31.79 O
ATOM 11 C2' G A 30 -6.910 -9.032 18.747 1.00 30.47 C
ATOM 12 O2' G A 30 -5.583 -9.443 19.023 1.00 30.70 O
ATOM 13 C1' G A 30 -6.852 -7.532 18.481 1.00 31.97 C
ATOM 14 N9 G A 30 -8.056 -6.830 18.941 1.00 28.62 N
ATOM 15 C8 G A 30 -9.065 -6.330 18.161 1.00 31.09 C
ATOM 16 N7 G A 30 -9.987 -5.738 18.869 1.00 34.78 N
ATOM 17 C5 G A 30 -9.554 -5.857 20.186 1.00 29.33 C
ATOM 18 C6 G A 30 -10.155 -5.408 21.388 1.00 31.88 C
ATOM 19 O6 G A 30 -11.221 -4.796 21.532 1.00 29.85 O
ATOM 20 N1 G A 30 -9.385 -5.747 22.493 1.00 27.36 N
ATOM 21 C2 G A 30 -8.190 -6.418 22.456 1.00 25.59 C
ATOM 22 N2 G A 30 -7.613 -6.631 23.655 1.00 24.35 N
ATOM 23 N3 G A 30 -7.616 -6.844 21.340 1.00 25.36 N
ATOM 24 C4 G A 30 -8.354 -6.524 20.250 1.00 28.72 C
ATOM 25 P A A 31 -7.773 -12.151 17.889 1.00 34.61 P
ATOM 26 OP1 A A 31 -7.393 -13.295 17.026 1.00 35.46 O
ATOM 27 OP2 A A 31 -9.201 -11.797 18.128 1.00 31.24 O
ATOM 28 O5' A A 31 -7.016 -12.260 19.299 1.00 28.00 O
TER
ATOM 1 O3' G B 30 -7.007 -10.917 17.188 1.00 31.79 O
ATOM 2 P A B 31 -7.773 -12.151 17.889 1.00 34.61 P
ATOM 3 OP1 A B 31 -7.393 -13.295 17.026 1.00 35.46 O
ATOM 4 OP2 A B 31 -9.201 -11.797 18.128 1.00 31.24 O
ATOM 5 O5' A B 31 -7.016 -12.260 19.299 1.00 28.00 O
ATOM 6 C5' A B 31 -5.658 -12.676 19.376 1.00 28.99 C
ATOM 7 C4' A B 31 -5.534 -13.925 20.210 1.00 29.01 C
ATOM 8 O4' A B 31 -5.832 -13.630 21.607 1.00 25.29 O
ATOM 9 C3' A B 31 -6.467 -15.063 19.812 1.00 26.06 C
ATOM 10 O3' A B 31 -5.783 -16.285 20.057 1.00 25.80 O
ATOM 11 C2' A B 31 -7.606 -14.925 20.818 1.00 25.91 C
ATOM 12 O2' A B 31 -8.354 -16.103 21.024 1.00 23.82 O
ATOM 13 C1' A B 31 -6.821 -14.534 22.066 1.00 23.40 C
ATOM 14 N9 A B 31 -7.619 -13.917 23.128 1.00 22.87 N
ATOM 15 C8 A B 31 -8.683 -13.050 23.018 1.00 23.66 C
ATOM 16 N7 A B 31 -9.189 -12.688 24.178 1.00 23.04 N
ATOM 17 C5 A B 31 -8.414 -13.357 25.112 1.00 22.13 C
ATOM 18 C6 A B 31 -8.447 -13.388 26.522 1.00 22.83 C
ATOM 19 N6 A B 31 -9.328 -12.702 27.273 1.00 20.29 N
ATOM 20 N1 A B 31 -7.525 -14.152 27.150 1.00 20.59 N
ATOM 21 C2 A B 31 -6.647 -14.839 26.405 1.00 24.71 C
ATOM 22 N3 A B 31 -6.526 -14.885 25.072 1.00 23.05 N
ATOM 23 C4 A B 31 -7.447 -14.115 24.479 1.00 21.59 C
ATOM 24 P U B 32 -5.725 -17.425 18.937 1.00 32.16 P
ATOM 25 OP1 U B 32 -7.129 -17.693 18.535 1.00 28.43 O
ATOM 26 OP2 U B 32 -4.919 -18.551 19.481 1.00 33.19 O
ATOM 27 O5' U B 32 -4.978 -16.659 17.777 1.00 39.27 O
TER
ATOM 2 P G A 30 -8.711 -6.907 13.586 1.00 40.41 P
ATOM 3 OP1 G A 30 -8.784 -7.732 12.353 1.00 47.70 O
ATOM 4 OP2 G A 30 -9.880 -6.074 13.959 1.00 38.57 O
ATOM 5 O5' G A 30 -8.306 -7.759 14.880 1.00 44.77 O
ATOM 6 C5' G A 30 -7.118 -8.527 15.000 1.00 39.17 C
ATOM 7 C4' G A 30 -6.632 -8.632 16.432 1.00 36.22 C
ATOM 8 O4' G A 30 -6.709 -7.344 17.093 1.00 36.76 O
ATOM 9 C3' G A 30 -7.365 -9.564 17.391 1.00 32.34 C
ATOM 10 O3' G A 30 -7.007 -10.917 17.188 1.00 31.79 O
ATOM 11 C2' G A 30 -6.910 -9.032 18.747 1.00 30.47 C
ATOM 12 O2' G A 30 -5.583 -9.443 19.023 1.00 30.70 O
ATOM 13 C1' G A 30 -6.852 -7.532 18.481 1.00 31.97 C
ATOM 14 N9 G A 30 -8.056 -6.830 18.941 1.00 28.62 N
ATOM 15 C8 G A 30 -9.065 -6.330 18.161 1.00 31.09 C
ATOM 16 N7 G A 30 -9.987 -5.738 18.869 1.00 34.78 N
ATOM 17 C5 G A 30 -9.554 -5.857 20.186 1.00 29.33 C
ATOM 18 C6 G A 30 -10.155 -5.408 21.388 1.00 31.88 C
ATOM 19 O6 G A 30 -11.221 -4.796 21.532 1.00 29.85 O
ATOM 20 N1 G A 30 -9.385 -5.747 22.493 1.00 27.36 N
ATOM 21 C2 G A 30 -8.190 -6.418 22.456 1.00 25.59 C
ATOM 22 N2 G A 30 -7.613 -6.631 23.655 1.00 24.35 N
ATOM 23 N3 G A 30 -7.616 -6.844 21.340 1.00 25.36 N
ATOM 24 C4 G A 30 -8.354 -6.524 20.250 1.00 28.72 C
ATOM 25 P A A 31 -7.773 -12.151 17.889 1.00 34.61 P
ATOM 26 OP1 A A 31 -7.393 -13.295 17.026 1.00 35.46 O
ATOM 27 OP2 A A 31 -9.201 -11.797 18.128 1.00 31.24 O
ATOM 28 O5' A A 31 -7.016 -12.260 19.299 1.00 28.00 O
TER
ATOM 1 O3' G B 30 -7.007 -10.917 17.188 1.00 31.79 O
ATOM 2 P A B 31 -7.773 -12.151 17.889 1.00 34.61 P
ATOM 3 OP1 A B 31 -7.393 -13.295 17.026 1.00 35.46 O
ATOM 4 OP2 A B 31 -9.201 -11.797 18.128 1.00 31.24 O
ATOM 5 O5' A B 31 -7.016 -12.260 19.299 1.00 28.00 O
ATOM 6 C5' A B 31 -5.658 -12.676 19.376 1.00 28.99 C
ATOM 7 C4' A B 31 -5.534 -13.925 20.210 1.00 29.01 C
ATOM 8 O4' A B 31 -5.832 -13.630 21.607 1.00 25.29 O
ATOM 9 C3' A B 31 -6.467 -15.063 19.812 1.00 26.06 C
ATOM 10 O3' A B 31 -5.783 -16.285 20.057 1.00 25.80 O
ATOM 11 C2' A B 31 -7.606 -14.925 20.818 1.00 25.91 C
ATOM 12 O2' A B 31 -8.354 -16.103 21.024 1.00 23.82 O
ATOM 13 C1' A B 31 -6.821 -14.534 22.066 1.00 23.40 C
ATOM 14 N9 A B 31 -7.619 -13.917 23.128 1.00 22.87 N
ATOM 15 C8 A B 31 -8.683 -13.050 23.018 1.00 23.66 C
ATOM 16 N7 A B 31 -9.189 -12.688 24.178 1.00 23.04 N
ATOM 17 C5 A B 31 -8.414 -13.357 25.112 1.00 22.13 C
ATOM 18 C6 A B 31 -8.447 -13.388 26.522 1.00 22.83 C
ATOM 19 N6 A B 31 -9.328 -12.702 27.273 1.00 20.29 N
ATOM 20 N1 A B 31 -7.525 -14.152 27.150 1.00 20.59 N
ATOM 21 C2 A B 31 -6.647 -14.839 26.405 1.00 24.71 C
ATOM 22 N3 A B 31 -6.526 -14.885 25.072 1.00 23.05 N
ATOM 23 C4 A B 31 -7.447 -14.115 24.479 1.00 21.59 C
ATOM 24 P U B 32 -5.725 -17.425 18.937 1.00 32.16 P
ATOM 25 OP1 U B 32 -7.129 -17.693 18.535 1.00 28.43 O
ATOM 26 OP2 U B 32 -4.919 -18.551 19.481 1.00 33.19 O
ATOM 27 O5' U B 32 -4.978 -16.659 17.777 1.00 39.27 O
TER
Atoms:
OP1: (-8.784,-7.732,12.353)
OP2: (-9.880,-6.074,13.959)
C3': (-7.365,-9.564,17.391)
C1': (-6.852,-7.532,18.481)
C5': (-7.118,-8.527,15.000)
O6: (-11.221,-4.796,21.532)
O4': (-6.709,-7.344,17.093)
C8: (-9.065,-6.330,18.161)
C2: (-8.190,-6.418,22.456)
C6: (-10.155,-5.408,21.388)
C5: (-9.554,-5.857,20.186)
C4: (-8.354,-6.524,20.250)
P: (-8.711,-6.907,13.586)
C4': (-6.632,-8.632,16.432)
C2': (-6.910,-9.032,18.747)
O2': (-5.583,-9.443,19.023)
N1: (-9.385,-5.747,22.493)
N2: (-7.613,-6.631,23.655)
N3: (-7.616,-6.844,21.340)
N7: (-9.987,-5.738,18.869)
N9: (-8.056,-6.830,18.941)
O5': (-8.306,-7.759,14.880)
O3': (-7.007,-10.917,17.188)
OP2: (-9.880,-6.074,13.959)
C3': (-7.365,-9.564,17.391)
C1': (-6.852,-7.532,18.481)
C5': (-7.118,-8.527,15.000)
O6: (-11.221,-4.796,21.532)
O4': (-6.709,-7.344,17.093)
C8: (-9.065,-6.330,18.161)
C2: (-8.190,-6.418,22.456)
C6: (-10.155,-5.408,21.388)
C5: (-9.554,-5.857,20.186)
C4: (-8.354,-6.524,20.250)
P: (-8.711,-6.907,13.586)
C4': (-6.632,-8.632,16.432)
C2': (-6.910,-9.032,18.747)
O2': (-5.583,-9.443,19.023)
N1: (-9.385,-5.747,22.493)
N2: (-7.613,-6.631,23.655)
N3: (-7.616,-6.844,21.340)
N7: (-9.987,-5.738,18.869)
N9: (-8.056,-6.830,18.941)
O5': (-8.306,-7.759,14.880)
O3': (-7.007,-10.917,17.188)
OP1: (-7.393,-13.295,17.026)
OP2: (-9.201,-11.797,18.128)
C3': (-6.467,-15.063,19.812)
C1': (-6.821,-14.534,22.066)
C5': (-5.658,-12.676,19.376)
O4': (-5.832,-13.630,21.607)
C8: (-8.683,-13.050,23.018)
O2': (-8.354,-16.103,21.024)
C6: (-8.447,-13.388,26.522)
C5: (-8.414,-13.357,25.112)
C4: (-7.447,-14.115,24.479)
P: (-7.773,-12.151,17.889)
C4': (-5.534,-13.925,20.210)
C2': (-7.606,-14.925,20.818)
C2: (-6.647,-14.839,26.405)
N1: (-7.525,-14.152,27.150)
N3: (-6.526,-14.885,25.072)
N6: (-9.328,-12.702,27.273)
N7: (-9.189,-12.688,24.178)
N9: (-7.619,-13.917,23.128)
O5': (-7.016,-12.260,19.299)
O3': (-5.783,-16.285,20.057)
OP2: (-9.201,-11.797,18.128)
C3': (-6.467,-15.063,19.812)
C1': (-6.821,-14.534,22.066)
C5': (-5.658,-12.676,19.376)
O4': (-5.832,-13.630,21.607)
C8: (-8.683,-13.050,23.018)
O2': (-8.354,-16.103,21.024)
C6: (-8.447,-13.388,26.522)
C5: (-8.414,-13.357,25.112)
C4: (-7.447,-14.115,24.479)
P: (-7.773,-12.151,17.889)
C4': (-5.534,-13.925,20.210)
C2': (-7.606,-14.925,20.818)
C2: (-6.647,-14.839,26.405)
N1: (-7.525,-14.152,27.150)
N3: (-6.526,-14.885,25.072)
N6: (-9.328,-12.702,27.273)
N7: (-9.189,-12.688,24.178)
N9: (-7.619,-13.917,23.128)
O5': (-7.016,-12.260,19.299)
O3': (-5.783,-16.285,20.057)
Image (generated by PyMOL):