ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIJ:01081:01082

Extra

PDB:
ATOM 1 O3' G A1080 35.900 101.276 128.345 1.00 35.44 O
ATOM 2 P U A1081 35.796 101.955 126.892 1.00 37.40 P
ATOM 3 OP1 U A1081 35.735 100.864 125.885 1.00 39.61 O
ATOM 4 OP2 U A1081 36.845 102.994 126.783 1.00 35.24 O
ATOM 5 O5' U A1081 34.374 102.668 126.909 1.00 37.42 O
ATOM 6 C5' U A1081 33.178 101.884 126.818 1.00 34.99 C
ATOM 7 C4' U A1081 31.970 102.777 126.763 1.00 36.71 C
ATOM 8 O4' U A1081 31.890 103.564 127.978 1.00 36.81 O
ATOM 9 C3' U A1081 31.946 103.843 125.685 1.00 37.89 C
ATOM 10 O3' U A1081 31.600 103.331 124.406 1.00 41.31 O
ATOM 11 C2' U A1081 30.860 104.762 126.214 1.00 37.61 C
ATOM 12 O2' U A1081 29.568 104.213 126.020 1.00 39.78 O
ATOM 13 C1' U A1081 31.191 104.767 127.706 1.00 35.98 C
ATOM 14 N1 U A1081 32.039 105.915 128.059 1.00 35.69 N
ATOM 15 C2 U A1081 31.400 107.103 128.349 1.00 35.98 C
ATOM 16 O2 U A1081 30.194 107.212 128.364 1.00 40.70 O
ATOM 17 N3 U A1081 32.225 108.163 128.614 1.00 35.71 N
ATOM 18 C4 U A1081 33.595 108.159 128.619 1.00 35.02 C
ATOM 19 O4 U A1081 34.196 109.208 128.832 1.00 35.67 O
ATOM 20 C5 U A1081 34.189 106.891 128.336 1.00 35.58 C
ATOM 21 C6 U A1081 33.410 105.835 128.077 1.00 36.53 C
ATOM 22 P A A1082 32.200 104.026 123.086 1.00 41.39 P
ATOM 23 OP1 A A1082 32.064 105.503 123.207 1.00 39.80 O
ATOM 24 OP2 A A1082 31.616 103.317 121.916 1.00 39.77 O
ATOM 25 O5' A A1082 33.751 103.690 123.153 1.00 42.83 O
TER

ATOM 1 O3' U B1081 31.600 103.331 124.406 1.00 41.31 O
ATOM 2 P A B1082 32.200 104.026 123.086 1.00 41.39 P
ATOM 3 OP1 A B1082 32.064 105.503 123.207 1.00 39.80 O
ATOM 4 OP2 A B1082 31.616 103.317 121.916 1.00 39.77 O
ATOM 5 O5' A B1082 33.751 103.690 123.153 1.00 42.83 O
ATOM 6 C5' A B1082 34.210 102.336 123.153 1.00 41.87 C
ATOM 7 C4' A B1082 35.212 102.141 122.047 1.00 44.16 C
ATOM 8 O4' A B1082 36.262 103.143 122.146 1.00 43.65 O
ATOM 9 C3' A B1082 35.917 100.793 122.038 1.00 44.79 C
ATOM 10 O3' A B1082 36.221 100.478 120.687 1.00 47.70 O
ATOM 11 C2' A B1082 37.202 101.100 122.793 1.00 43.07 C
ATOM 12 O2' A B1082 38.239 100.208 122.474 1.00 44.75 O
ATOM 13 C1' A B1082 37.515 102.501 122.271 1.00 42.95 C
ATOM 14 N9 A B1082 38.369 103.329 123.125 1.00 42.87 N
ATOM 15 C8 A B1082 38.758 103.114 124.424 1.00 42.17 C
ATOM 16 N7 A B1082 39.511 104.069 124.914 1.00 42.87 N
ATOM 17 C5 A B1082 39.631 104.970 123.867 1.00 41.03 C
ATOM 18 C6 A B1082 40.302 106.200 123.749 1.00 40.62 C
ATOM 19 N6 A B1082 40.999 106.761 124.740 1.00 40.39 N
ATOM 20 N1 A B1082 40.228 106.844 122.566 1.00 38.05 N
ATOM 21 C2 A B1082 39.521 106.286 121.580 1.00 37.85 C
ATOM 22 N3 A B1082 38.846 105.144 121.569 1.00 38.76 N
ATOM 23 C4 A B1082 38.941 104.525 122.757 1.00 41.24 C
ATOM 24 P A B1083 35.126 99.742 119.772 1.00 49.46 P
ATOM 25 OP1 A B1083 35.576 99.941 118.372 1.00 48.50 O
ATOM 26 OP2 A B1083 33.756 100.165 120.173 1.00 51.29 O
ATOM 27 O5' A B1083 35.264 98.209 120.170 1.00 47.10 O
TER

Atoms:
C4: (33.595,108.159,128.619)
N3: (32.225,108.163,128.614)
OP1: (35.735,100.864,125.885)
OP2: (36.845,102.994,126.783)
C2: (31.400,107.103,128.349)
C1': (31.191,104.767,127.706)
C3': (31.946,103.843,125.685)
O5': (34.374,102.668,126.909)
O4': (31.890,103.564,127.978)
C5': (33.178,101.884,126.818)
P: (35.796,101.955,126.892)
C4': (31.970,102.777,126.763)
C2': (30.860,104.762,126.214)
O2': (29.568,104.213,126.020)
N1: (32.039,105.915,128.059)
O4: (34.196,109.208,128.832)
O2: (30.194,107.212,128.364)
C6: (33.410,105.835,128.077)
C5: (34.189,106.891,128.336)
O3': (31.600,103.331,124.406)
OP1: (32.064,105.503,123.207)
OP2: (31.616,103.317,121.916)
C3': (35.917,100.793,122.038)
C1': (37.515,102.501,122.271)
C5': (34.210,102.336,123.153)
O4': (36.262,103.143,122.146)
C8: (38.758,103.114,124.424)
O2': (38.239,100.208,122.474)
C6: (40.302,106.200,123.749)
C5: (39.631,104.970,123.867)
C4: (38.941,104.525,122.757)
P: (32.200,104.026,123.086)
C4': (35.212,102.141,122.047)
C2': (37.202,101.100,122.793)
C2: (39.521,106.286,121.580)
N1: (40.228,106.844,122.566)
N3: (38.846,105.144,121.569)
N6: (40.999,106.761,124.740)
N7: (39.511,104.069,124.914)
N9: (38.369,103.329,123.125)
O5': (33.751,103.690,123.153)
O3': (36.221,100.478,120.687)
Image (generated by PyMOL):
PyMOL image
show in jmol