ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:01081:01082

Extra

PDB:
ATOM 1 O3' G A1080 36.117 101.421 128.727 1.00 43.06 O
ATOM 2 P U A1081 35.858 102.053 127.271 1.00 45.07 P
ATOM 3 OP1 U A1081 35.714 100.928 126.307 1.00 42.55 O
ATOM 4 OP2 U A1081 36.869 103.110 127.030 1.00 43.62 O
ATOM 5 O5' U A1081 34.441 102.760 127.408 1.00 45.11 O
ATOM 6 C5' U A1081 33.235 101.993 127.302 1.00 43.06 C
ATOM 7 C4' U A1081 32.050 102.907 127.184 1.00 42.51 C
ATOM 8 O4' U A1081 31.962 103.723 128.378 1.00 42.35 O
ATOM 9 C3' U A1081 32.085 103.946 126.080 1.00 42.00 C
ATOM 10 O3' U A1081 31.764 103.419 124.797 1.00 44.80 O
ATOM 11 C2' U A1081 31.023 104.912 126.568 1.00 41.49 C
ATOM 12 O2' U A1081 29.721 104.400 126.367 1.00 40.87 O
ATOM 13 C1' U A1081 31.333 104.949 128.063 1.00 40.57 C
ATOM 14 N1 U A1081 32.244 106.049 128.409 1.00 41.57 N
ATOM 15 C2 U A1081 31.687 107.287 128.650 1.00 42.69 C
ATOM 16 O2 U A1081 30.495 107.491 128.616 1.00 45.96 O
ATOM 17 N3 U A1081 32.579 108.285 128.928 1.00 44.25 N
ATOM 18 C4 U A1081 33.945 108.178 128.990 1.00 44.70 C
ATOM 19 O4 U A1081 34.622 109.186 129.207 1.00 46.36 O
ATOM 20 C5 U A1081 34.448 106.865 128.748 1.00 44.06 C
ATOM 21 C6 U A1081 33.599 105.868 128.474 1.00 42.99 C
ATOM 22 P A A1082 32.324 104.147 123.473 1.00 44.31 P
ATOM 23 OP1 A A1082 32.122 105.613 123.608 1.00 43.02 O
ATOM 24 OP2 A A1082 31.767 103.423 122.298 1.00 43.04 O
ATOM 25 O5' A A1082 33.891 103.882 123.512 1.00 47.82 O
TER

ATOM 1 O3' U B1081 31.764 103.419 124.797 1.00 44.80 O
ATOM 2 P A B1082 32.324 104.147 123.473 1.00 44.31 P
ATOM 3 OP1 A B1082 32.122 105.613 123.608 1.00 43.02 O
ATOM 4 OP2 A B1082 31.767 103.423 122.298 1.00 43.04 O
ATOM 5 O5' A B1082 33.891 103.882 123.512 1.00 47.82 O
ATOM 6 C5' A B1082 34.418 102.541 123.546 1.00 48.46 C
ATOM 7 C4' A B1082 35.415 102.358 122.432 1.00 48.67 C
ATOM 8 O4' A B1082 36.458 103.363 122.538 1.00 48.19 O
ATOM 9 C3' A B1082 36.123 101.012 122.386 1.00 49.73 C
ATOM 10 O3' A B1082 36.364 100.704 121.013 1.00 52.42 O
ATOM 11 C2' A B1082 37.434 101.304 123.110 1.00 47.68 C
ATOM 12 O2' A B1082 38.468 100.440 122.695 1.00 47.85 O
ATOM 13 C1' A B1082 37.720 102.730 122.641 1.00 48.50 C
ATOM 14 N9 A B1082 38.570 103.554 123.507 1.00 48.15 N
ATOM 15 C8 A B1082 38.923 103.372 124.821 1.00 47.57 C
ATOM 16 N7 A B1082 39.644 104.350 125.313 1.00 47.12 N
ATOM 17 C5 A B1082 39.787 105.227 124.249 1.00 46.79 C
ATOM 18 C6 A B1082 40.423 106.473 124.128 1.00 47.38 C
ATOM 19 N6 A B1082 41.046 107.088 125.136 1.00 47.13 N
ATOM 20 N1 A B1082 40.389 107.081 122.922 1.00 46.74 N
ATOM 21 C2 A B1082 39.753 106.474 121.919 1.00 47.04 C
ATOM 22 N3 A B1082 39.106 105.315 121.912 1.00 47.38 N
ATOM 23 C4 A B1082 39.156 104.736 123.124 1.00 47.56 C
ATOM 24 P A B1083 35.289 99.832 120.189 1.00 52.99 P
ATOM 25 OP1 A B1083 35.627 100.021 118.751 1.00 49.91 O
ATOM 26 OP2 A B1083 33.907 100.138 120.670 1.00 53.14 O
ATOM 27 O5' A B1083 35.592 98.334 120.640 1.00 51.44 O
TER

Atoms:
C4: (33.945,108.178,128.990)
N3: (32.579,108.285,128.928)
OP1: (35.714,100.928,126.307)
OP2: (36.869,103.110,127.030)
C2: (31.687,107.287,128.650)
C1': (31.333,104.949,128.063)
C3': (32.085,103.946,126.080)
O5': (34.441,102.760,127.408)
O4': (31.962,103.723,128.378)
C5': (33.235,101.993,127.302)
P: (35.858,102.053,127.271)
C4': (32.050,102.907,127.184)
C2': (31.023,104.912,126.568)
O2': (29.721,104.400,126.367)
N1: (32.244,106.049,128.409)
O4: (34.622,109.186,129.207)
O2: (30.495,107.491,128.616)
C6: (33.599,105.868,128.474)
C5: (34.448,106.865,128.748)
O3': (31.764,103.419,124.797)
OP1: (32.122,105.613,123.608)
OP2: (31.767,103.423,122.298)
C3': (36.123,101.012,122.386)
C1': (37.720,102.730,122.641)
C5': (34.418,102.541,123.546)
O4': (36.458,103.363,122.538)
C8: (38.923,103.372,124.821)
O2': (38.468,100.440,122.695)
C6: (40.423,106.473,124.128)
C5: (39.787,105.227,124.249)
C4: (39.156,104.736,123.124)
P: (32.324,104.147,123.473)
C4': (35.415,102.358,122.432)
C2': (37.434,101.304,123.110)
C2: (39.753,106.474,121.919)
N1: (40.389,107.081,122.922)
N3: (39.106,105.315,121.912)
N6: (41.046,107.088,125.136)
N7: (39.644,104.350,125.313)
N9: (38.570,103.554,123.507)
O5': (33.891,103.882,123.512)
O3': (36.364,100.704,121.013)
Image (generated by PyMOL):
PyMOL image
show in jmol