Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01081:01082
Extra
PDB:
ATOM 1 O3' G A1080 35.894 101.247 128.244 1.00 42.83 O
ATOM 2 P U A1081 35.790 101.950 126.806 1.00 43.52 P
ATOM 3 OP1 U A1081 35.759 100.871 125.788 1.00 44.29 O
ATOM 4 OP2 U A1081 36.815 103.016 126.717 1.00 42.73 O
ATOM 5 O5' U A1081 34.364 102.648 126.834 1.00 42.60 O
ATOM 6 C5' U A1081 33.179 101.859 126.763 1.00 41.86 C
ATOM 7 C4' U A1081 31.964 102.743 126.700 1.00 42.71 C
ATOM 8 O4' U A1081 31.872 103.528 127.915 1.00 41.32 O
ATOM 9 C3' U A1081 31.925 103.805 125.615 1.00 42.73 C
ATOM 10 O3' U A1081 31.584 103.288 124.334 1.00 45.37 O
ATOM 11 C2' U A1081 30.835 104.715 126.152 1.00 41.71 C
ATOM 12 O2' U A1081 29.552 104.143 125.987 1.00 42.61 O
ATOM 13 C1' U A1081 31.181 104.733 127.640 1.00 40.16 C
ATOM 14 N1 U A1081 32.044 105.873 127.978 1.00 39.82 N
ATOM 15 C2 U A1081 31.424 107.068 128.296 1.00 40.16 C
ATOM 16 O2 U A1081 30.217 107.194 128.346 1.00 43.05 O
ATOM 17 N3 U A1081 32.267 108.112 128.552 1.00 38.88 N
ATOM 18 C4 U A1081 33.632 108.089 128.532 1.00 40.55 C
ATOM 19 O4 U A1081 34.250 109.124 128.758 1.00 43.23 O
ATOM 20 C5 U A1081 34.206 106.817 128.219 1.00 41.58 C
ATOM 21 C6 U A1081 33.411 105.777 127.961 1.00 40.72 C
ATOM 22 P A A1082 32.197 103.970 123.010 1.00 46.87 P
ATOM 23 OP1 A A1082 32.014 105.451 123.088 1.00 44.06 O
ATOM 24 OP2 A A1082 31.642 103.213 121.856 1.00 44.47 O
ATOM 25 O5' A A1082 33.755 103.655 123.094 1.00 47.04 O
TER
ATOM 1 O3' U B1081 31.584 103.288 124.334 1.00 45.37 O
ATOM 2 P A B1082 32.197 103.970 123.010 1.00 46.87 P
ATOM 3 OP1 A B1082 32.014 105.451 123.088 1.00 44.06 O
ATOM 4 OP2 A B1082 31.642 103.213 121.856 1.00 44.47 O
ATOM 5 O5' A B1082 33.755 103.655 123.094 1.00 47.04 O
ATOM 6 C5' A B1082 34.235 102.295 123.148 1.00 49.04 C
ATOM 7 C4' A B1082 35.259 102.071 122.066 1.00 50.26 C
ATOM 8 O4' A B1082 36.314 103.059 122.191 1.00 50.93 O
ATOM 9 C3' A B1082 35.957 100.716 122.039 1.00 50.52 C
ATOM 10 O3' A B1082 36.268 100.431 120.677 1.00 52.06 O
ATOM 11 C2' A B1082 37.255 101.003 122.786 1.00 49.09 C
ATOM 12 O2' A B1082 38.294 100.130 122.407 1.00 49.95 O
ATOM 13 C1' A B1082 37.564 102.408 122.281 1.00 49.08 C
ATOM 14 N9 A B1082 38.444 103.240 123.100 1.00 47.62 N
ATOM 15 C8 A B1082 38.882 103.061 124.387 1.00 47.58 C
ATOM 16 N7 A B1082 39.610 104.055 124.838 1.00 48.56 N
ATOM 17 C5 A B1082 39.667 104.940 123.768 1.00 47.55 C
ATOM 18 C6 A B1082 40.264 106.208 123.611 1.00 47.15 C
ATOM 19 N6 A B1082 40.936 106.838 124.575 1.00 45.45 N
ATOM 20 N1 A B1082 40.134 106.820 122.414 1.00 47.02 N
ATOM 21 C2 A B1082 39.442 106.200 121.451 1.00 47.07 C
ATOM 22 N3 A B1082 38.825 105.023 121.482 1.00 46.41 N
ATOM 23 C4 A B1082 38.975 104.439 122.685 1.00 47.13 C
ATOM 24 P A B1083 35.204 99.650 119.756 1.00 54.19 P
ATOM 25 OP1 A B1083 35.652 99.828 118.345 1.00 52.47 O
ATOM 26 OP2 A B1083 33.818 100.045 120.144 1.00 55.75 O
ATOM 27 O5' A B1083 35.388 98.125 120.169 1.00 50.38 O
TER
ATOM 2 P U A1081 35.790 101.950 126.806 1.00 43.52 P
ATOM 3 OP1 U A1081 35.759 100.871 125.788 1.00 44.29 O
ATOM 4 OP2 U A1081 36.815 103.016 126.717 1.00 42.73 O
ATOM 5 O5' U A1081 34.364 102.648 126.834 1.00 42.60 O
ATOM 6 C5' U A1081 33.179 101.859 126.763 1.00 41.86 C
ATOM 7 C4' U A1081 31.964 102.743 126.700 1.00 42.71 C
ATOM 8 O4' U A1081 31.872 103.528 127.915 1.00 41.32 O
ATOM 9 C3' U A1081 31.925 103.805 125.615 1.00 42.73 C
ATOM 10 O3' U A1081 31.584 103.288 124.334 1.00 45.37 O
ATOM 11 C2' U A1081 30.835 104.715 126.152 1.00 41.71 C
ATOM 12 O2' U A1081 29.552 104.143 125.987 1.00 42.61 O
ATOM 13 C1' U A1081 31.181 104.733 127.640 1.00 40.16 C
ATOM 14 N1 U A1081 32.044 105.873 127.978 1.00 39.82 N
ATOM 15 C2 U A1081 31.424 107.068 128.296 1.00 40.16 C
ATOM 16 O2 U A1081 30.217 107.194 128.346 1.00 43.05 O
ATOM 17 N3 U A1081 32.267 108.112 128.552 1.00 38.88 N
ATOM 18 C4 U A1081 33.632 108.089 128.532 1.00 40.55 C
ATOM 19 O4 U A1081 34.250 109.124 128.758 1.00 43.23 O
ATOM 20 C5 U A1081 34.206 106.817 128.219 1.00 41.58 C
ATOM 21 C6 U A1081 33.411 105.777 127.961 1.00 40.72 C
ATOM 22 P A A1082 32.197 103.970 123.010 1.00 46.87 P
ATOM 23 OP1 A A1082 32.014 105.451 123.088 1.00 44.06 O
ATOM 24 OP2 A A1082 31.642 103.213 121.856 1.00 44.47 O
ATOM 25 O5' A A1082 33.755 103.655 123.094 1.00 47.04 O
TER
ATOM 1 O3' U B1081 31.584 103.288 124.334 1.00 45.37 O
ATOM 2 P A B1082 32.197 103.970 123.010 1.00 46.87 P
ATOM 3 OP1 A B1082 32.014 105.451 123.088 1.00 44.06 O
ATOM 4 OP2 A B1082 31.642 103.213 121.856 1.00 44.47 O
ATOM 5 O5' A B1082 33.755 103.655 123.094 1.00 47.04 O
ATOM 6 C5' A B1082 34.235 102.295 123.148 1.00 49.04 C
ATOM 7 C4' A B1082 35.259 102.071 122.066 1.00 50.26 C
ATOM 8 O4' A B1082 36.314 103.059 122.191 1.00 50.93 O
ATOM 9 C3' A B1082 35.957 100.716 122.039 1.00 50.52 C
ATOM 10 O3' A B1082 36.268 100.431 120.677 1.00 52.06 O
ATOM 11 C2' A B1082 37.255 101.003 122.786 1.00 49.09 C
ATOM 12 O2' A B1082 38.294 100.130 122.407 1.00 49.95 O
ATOM 13 C1' A B1082 37.564 102.408 122.281 1.00 49.08 C
ATOM 14 N9 A B1082 38.444 103.240 123.100 1.00 47.62 N
ATOM 15 C8 A B1082 38.882 103.061 124.387 1.00 47.58 C
ATOM 16 N7 A B1082 39.610 104.055 124.838 1.00 48.56 N
ATOM 17 C5 A B1082 39.667 104.940 123.768 1.00 47.55 C
ATOM 18 C6 A B1082 40.264 106.208 123.611 1.00 47.15 C
ATOM 19 N6 A B1082 40.936 106.838 124.575 1.00 45.45 N
ATOM 20 N1 A B1082 40.134 106.820 122.414 1.00 47.02 N
ATOM 21 C2 A B1082 39.442 106.200 121.451 1.00 47.07 C
ATOM 22 N3 A B1082 38.825 105.023 121.482 1.00 46.41 N
ATOM 23 C4 A B1082 38.975 104.439 122.685 1.00 47.13 C
ATOM 24 P A B1083 35.204 99.650 119.756 1.00 54.19 P
ATOM 25 OP1 A B1083 35.652 99.828 118.345 1.00 52.47 O
ATOM 26 OP2 A B1083 33.818 100.045 120.144 1.00 55.75 O
ATOM 27 O5' A B1083 35.388 98.125 120.169 1.00 50.38 O
TER
Atoms:
C4: (33.632,108.089,128.532)
N3: (32.267,108.112,128.552)
OP1: (35.759,100.871,125.788)
OP2: (36.815,103.016,126.717)
C2: (31.424,107.068,128.296)
C1': (31.181,104.733,127.640)
C3': (31.925,103.805,125.615)
O5': (34.364,102.648,126.834)
O4': (31.872,103.528,127.915)
C5': (33.179,101.859,126.763)
P: (35.790,101.950,126.806)
C4': (31.964,102.743,126.700)
C2': (30.835,104.715,126.152)
O2': (29.552,104.143,125.987)
N1: (32.044,105.873,127.978)
O4: (34.250,109.124,128.758)
O2: (30.217,107.194,128.346)
C6: (33.411,105.777,127.961)
C5: (34.206,106.817,128.219)
O3': (31.584,103.288,124.334)
N3: (32.267,108.112,128.552)
OP1: (35.759,100.871,125.788)
OP2: (36.815,103.016,126.717)
C2: (31.424,107.068,128.296)
C1': (31.181,104.733,127.640)
C3': (31.925,103.805,125.615)
O5': (34.364,102.648,126.834)
O4': (31.872,103.528,127.915)
C5': (33.179,101.859,126.763)
P: (35.790,101.950,126.806)
C4': (31.964,102.743,126.700)
C2': (30.835,104.715,126.152)
O2': (29.552,104.143,125.987)
N1: (32.044,105.873,127.978)
O4: (34.250,109.124,128.758)
O2: (30.217,107.194,128.346)
C6: (33.411,105.777,127.961)
C5: (34.206,106.817,128.219)
O3': (31.584,103.288,124.334)
OP1: (32.014,105.451,123.088)
OP2: (31.642,103.213,121.856)
C3': (35.957,100.716,122.039)
C1': (37.564,102.408,122.281)
C5': (34.235,102.295,123.148)
O4': (36.314,103.059,122.191)
C8: (38.882,103.061,124.387)
O2': (38.294,100.130,122.407)
C6: (40.264,106.208,123.611)
C5: (39.667,104.940,123.768)
C4: (38.975,104.439,122.685)
P: (32.197,103.970,123.010)
C4': (35.259,102.071,122.066)
C2': (37.255,101.003,122.786)
C2: (39.442,106.200,121.451)
N1: (40.134,106.820,122.414)
N3: (38.825,105.023,121.482)
N6: (40.936,106.838,124.575)
N7: (39.610,104.055,124.838)
N9: (38.444,103.240,123.100)
O5': (33.755,103.655,123.094)
O3': (36.268,100.431,120.677)
OP2: (31.642,103.213,121.856)
C3': (35.957,100.716,122.039)
C1': (37.564,102.408,122.281)
C5': (34.235,102.295,123.148)
O4': (36.314,103.059,122.191)
C8: (38.882,103.061,124.387)
O2': (38.294,100.130,122.407)
C6: (40.264,106.208,123.611)
C5: (39.667,104.940,123.768)
C4: (38.975,104.439,122.685)
P: (32.197,103.970,123.010)
C4': (35.259,102.071,122.066)
C2': (37.255,101.003,122.786)
C2: (39.442,106.200,121.451)
N1: (40.134,106.820,122.414)
N3: (38.825,105.023,121.482)
N6: (40.936,106.838,124.575)
N7: (39.610,104.055,124.838)
N9: (38.444,103.240,123.100)
O5': (33.755,103.655,123.094)
O3': (36.268,100.431,120.677)
Image (generated by PyMOL):