Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02566:02735
Extra
PDB:
ATOM 1 O3' U A2565 68.275 173.944 112.711 1.00 43.97 O
ATOM 2 P A A2566 66.735 174.004 113.172 1.00 45.64 P
ATOM 3 OP1 A A2566 66.136 172.648 113.073 1.00 46.02 O
ATOM 4 OP2 A A2566 66.098 175.139 112.453 1.00 41.54 O
ATOM 5 O5' A A2566 66.816 174.408 114.712 1.00 45.38 O
ATOM 6 C5' A A2566 67.226 175.729 115.106 1.00 42.68 C
ATOM 7 C4' A A2566 66.058 176.480 115.699 1.00 43.34 C
ATOM 8 O4' A A2566 65.683 175.891 116.975 1.00 42.39 O
ATOM 9 C3' A A2566 66.334 177.928 116.051 1.00 42.53 C
ATOM 10 O3' A A2566 66.265 178.765 114.912 1.00 40.77 O
ATOM 11 C2' A A2566 65.235 178.219 117.059 1.00 42.57 C
ATOM 12 O2' A A2566 63.980 178.426 116.457 1.00 46.03 O
ATOM 13 C1' A A2566 65.209 176.908 117.845 1.00 42.86 C
ATOM 14 N9 A A2566 66.101 176.998 119.000 1.00 44.16 N
ATOM 15 C8 A A2566 67.408 176.590 119.115 1.00 43.86 C
ATOM 16 N7 A A2566 67.952 176.882 120.271 1.00 44.76 N
ATOM 17 C5 A A2566 66.931 177.513 120.970 1.00 45.18 C
ATOM 18 C6 A A2566 66.869 178.078 122.261 1.00 46.06 C
ATOM 19 N6 A A2566 67.905 178.121 123.108 1.00 44.46 N
ATOM 20 N1 A A2566 65.691 178.612 122.654 1.00 45.10 N
ATOM 21 C2 A A2566 64.660 178.590 121.801 1.00 44.94 C
ATOM 22 N3 A A2566 64.599 178.105 120.567 1.00 44.00 N
ATOM 23 C4 A A2566 65.781 177.573 120.207 1.00 44.33 C
ATOM 24 P C A2567 67.557 179.608 114.475 1.00 43.18 P
ATOM 25 OP1 C A2567 67.111 180.560 113.420 1.00 42.29 O
ATOM 26 OP2 C A2567 68.677 178.675 114.199 1.00 42.49 O
ATOM 27 O5' C A2567 67.946 180.427 115.783 1.00 43.73 O
TER
ATOM 1 O3' C B2734 60.511 181.351 120.374 1.00 48.34 O
ATOM 2 P A B2735 58.974 181.779 120.321 1.00 50.57 P
ATOM 3 OP1 A B2735 58.692 182.366 118.995 1.00 52.52 O
ATOM 4 OP2 A B2735 58.649 182.541 121.550 1.00 50.76 O
ATOM 5 O5' A B2735 58.223 180.390 120.421 1.00 52.22 O
ATOM 6 C5' A B2735 58.415 179.575 121.567 1.00 54.99 C
ATOM 7 C4' A B2735 57.692 178.277 121.408 1.00 55.47 C
ATOM 8 O4' A B2735 58.375 177.453 120.421 1.00 56.59 O
ATOM 9 C3' A B2735 57.678 177.459 122.690 1.00 56.33 C
ATOM 10 O3' A B2735 56.397 176.855 122.772 1.00 54.20 O
ATOM 11 C2' A B2735 58.789 176.438 122.449 1.00 58.02 C
ATOM 12 O2' A B2735 58.660 175.260 123.217 1.00 60.08 O
ATOM 13 C1' A B2735 58.576 176.169 120.966 1.00 59.93 C
ATOM 14 N9 A B2735 59.617 175.462 120.211 1.00 62.74 N
ATOM 15 C8 A B2735 59.429 174.784 119.024 1.00 64.88 C
ATOM 16 N7 A B2735 60.520 174.227 118.551 1.00 64.61 N
ATOM 17 C5 A B2735 61.490 174.557 119.483 1.00 63.27 C
ATOM 18 C6 A B2735 62.856 174.266 119.555 1.00 63.70 C
ATOM 19 N6 A B2735 63.509 173.541 118.645 1.00 63.73 N
ATOM 20 N1 A B2735 63.541 174.750 120.611 1.00 65.17 N
ATOM 21 C2 A B2735 62.880 175.473 121.531 1.00 63.84 C
ATOM 22 N3 A B2735 61.599 175.807 121.577 1.00 62.03 N
ATOM 23 C4 A B2735 60.950 175.317 120.512 1.00 62.56 C
ATOM 24 P C B2736 55.220 177.623 123.544 1.00 53.72 P
ATOM 25 OP1 C B2736 54.029 176.730 123.631 1.00 52.96 O
ATOM 26 OP2 C B2736 55.082 178.963 122.922 1.00 53.37 O
ATOM 27 O5' C B2736 55.813 177.801 125.012 1.00 53.57 O
TER
ATOM 2 P A A2566 66.735 174.004 113.172 1.00 45.64 P
ATOM 3 OP1 A A2566 66.136 172.648 113.073 1.00 46.02 O
ATOM 4 OP2 A A2566 66.098 175.139 112.453 1.00 41.54 O
ATOM 5 O5' A A2566 66.816 174.408 114.712 1.00 45.38 O
ATOM 6 C5' A A2566 67.226 175.729 115.106 1.00 42.68 C
ATOM 7 C4' A A2566 66.058 176.480 115.699 1.00 43.34 C
ATOM 8 O4' A A2566 65.683 175.891 116.975 1.00 42.39 O
ATOM 9 C3' A A2566 66.334 177.928 116.051 1.00 42.53 C
ATOM 10 O3' A A2566 66.265 178.765 114.912 1.00 40.77 O
ATOM 11 C2' A A2566 65.235 178.219 117.059 1.00 42.57 C
ATOM 12 O2' A A2566 63.980 178.426 116.457 1.00 46.03 O
ATOM 13 C1' A A2566 65.209 176.908 117.845 1.00 42.86 C
ATOM 14 N9 A A2566 66.101 176.998 119.000 1.00 44.16 N
ATOM 15 C8 A A2566 67.408 176.590 119.115 1.00 43.86 C
ATOM 16 N7 A A2566 67.952 176.882 120.271 1.00 44.76 N
ATOM 17 C5 A A2566 66.931 177.513 120.970 1.00 45.18 C
ATOM 18 C6 A A2566 66.869 178.078 122.261 1.00 46.06 C
ATOM 19 N6 A A2566 67.905 178.121 123.108 1.00 44.46 N
ATOM 20 N1 A A2566 65.691 178.612 122.654 1.00 45.10 N
ATOM 21 C2 A A2566 64.660 178.590 121.801 1.00 44.94 C
ATOM 22 N3 A A2566 64.599 178.105 120.567 1.00 44.00 N
ATOM 23 C4 A A2566 65.781 177.573 120.207 1.00 44.33 C
ATOM 24 P C A2567 67.557 179.608 114.475 1.00 43.18 P
ATOM 25 OP1 C A2567 67.111 180.560 113.420 1.00 42.29 O
ATOM 26 OP2 C A2567 68.677 178.675 114.199 1.00 42.49 O
ATOM 27 O5' C A2567 67.946 180.427 115.783 1.00 43.73 O
TER
ATOM 1 O3' C B2734 60.511 181.351 120.374 1.00 48.34 O
ATOM 2 P A B2735 58.974 181.779 120.321 1.00 50.57 P
ATOM 3 OP1 A B2735 58.692 182.366 118.995 1.00 52.52 O
ATOM 4 OP2 A B2735 58.649 182.541 121.550 1.00 50.76 O
ATOM 5 O5' A B2735 58.223 180.390 120.421 1.00 52.22 O
ATOM 6 C5' A B2735 58.415 179.575 121.567 1.00 54.99 C
ATOM 7 C4' A B2735 57.692 178.277 121.408 1.00 55.47 C
ATOM 8 O4' A B2735 58.375 177.453 120.421 1.00 56.59 O
ATOM 9 C3' A B2735 57.678 177.459 122.690 1.00 56.33 C
ATOM 10 O3' A B2735 56.397 176.855 122.772 1.00 54.20 O
ATOM 11 C2' A B2735 58.789 176.438 122.449 1.00 58.02 C
ATOM 12 O2' A B2735 58.660 175.260 123.217 1.00 60.08 O
ATOM 13 C1' A B2735 58.576 176.169 120.966 1.00 59.93 C
ATOM 14 N9 A B2735 59.617 175.462 120.211 1.00 62.74 N
ATOM 15 C8 A B2735 59.429 174.784 119.024 1.00 64.88 C
ATOM 16 N7 A B2735 60.520 174.227 118.551 1.00 64.61 N
ATOM 17 C5 A B2735 61.490 174.557 119.483 1.00 63.27 C
ATOM 18 C6 A B2735 62.856 174.266 119.555 1.00 63.70 C
ATOM 19 N6 A B2735 63.509 173.541 118.645 1.00 63.73 N
ATOM 20 N1 A B2735 63.541 174.750 120.611 1.00 65.17 N
ATOM 21 C2 A B2735 62.880 175.473 121.531 1.00 63.84 C
ATOM 22 N3 A B2735 61.599 175.807 121.577 1.00 62.03 N
ATOM 23 C4 A B2735 60.950 175.317 120.512 1.00 62.56 C
ATOM 24 P C B2736 55.220 177.623 123.544 1.00 53.72 P
ATOM 25 OP1 C B2736 54.029 176.730 123.631 1.00 52.96 O
ATOM 26 OP2 C B2736 55.082 178.963 122.922 1.00 53.37 O
ATOM 27 O5' C B2736 55.813 177.801 125.012 1.00 53.57 O
TER
Atoms:
OP1: (66.136,172.648,113.073)
OP2: (66.098,175.139,112.453)
C3': (66.334,177.928,116.051)
C1': (65.209,176.908,117.845)
C5': (67.226,175.729,115.106)
O4': (65.683,175.891,116.975)
C8: (67.408,176.590,119.115)
O2': (63.980,178.426,116.457)
C6: (66.869,178.078,122.261)
C5: (66.931,177.513,120.970)
C4: (65.781,177.573,120.207)
P: (66.735,174.004,113.172)
C4': (66.058,176.480,115.699)
C2': (65.235,178.219,117.059)
C2: (64.660,178.590,121.801)
N1: (65.691,178.612,122.654)
N3: (64.599,178.105,120.567)
N6: (67.905,178.121,123.108)
N7: (67.952,176.882,120.271)
N9: (66.101,176.998,119.000)
O5': (66.816,174.408,114.712)
O3': (66.265,178.765,114.912)
OP2: (66.098,175.139,112.453)
C3': (66.334,177.928,116.051)
C1': (65.209,176.908,117.845)
C5': (67.226,175.729,115.106)
O4': (65.683,175.891,116.975)
C8: (67.408,176.590,119.115)
O2': (63.980,178.426,116.457)
C6: (66.869,178.078,122.261)
C5: (66.931,177.513,120.970)
C4: (65.781,177.573,120.207)
P: (66.735,174.004,113.172)
C4': (66.058,176.480,115.699)
C2': (65.235,178.219,117.059)
C2: (64.660,178.590,121.801)
N1: (65.691,178.612,122.654)
N3: (64.599,178.105,120.567)
N6: (67.905,178.121,123.108)
N7: (67.952,176.882,120.271)
N9: (66.101,176.998,119.000)
O5': (66.816,174.408,114.712)
O3': (66.265,178.765,114.912)
OP1: (58.692,182.366,118.995)
OP2: (58.649,182.541,121.550)
C3': (57.678,177.459,122.690)
C1': (58.576,176.169,120.966)
C5': (58.415,179.575,121.567)
O4': (58.375,177.453,120.421)
C8: (59.429,174.784,119.024)
O2': (58.660,175.260,123.217)
C6: (62.856,174.266,119.555)
C5: (61.490,174.557,119.483)
C4: (60.950,175.317,120.512)
P: (58.974,181.779,120.321)
C4': (57.692,178.277,121.408)
C2': (58.789,176.438,122.449)
C2: (62.880,175.473,121.531)
N1: (63.541,174.750,120.611)
N3: (61.599,175.807,121.577)
N6: (63.509,173.541,118.645)
N7: (60.520,174.227,118.551)
N9: (59.617,175.462,120.211)
O5': (58.223,180.390,120.421)
O3': (56.397,176.855,122.772)
OP2: (58.649,182.541,121.550)
C3': (57.678,177.459,122.690)
C1': (58.576,176.169,120.966)
C5': (58.415,179.575,121.567)
O4': (58.375,177.453,120.421)
C8: (59.429,174.784,119.024)
O2': (58.660,175.260,123.217)
C6: (62.856,174.266,119.555)
C5: (61.490,174.557,119.483)
C4: (60.950,175.317,120.512)
P: (58.974,181.779,120.321)
C4': (57.692,178.277,121.408)
C2': (58.789,176.438,122.449)
C2: (62.880,175.473,121.531)
N1: (63.541,174.750,120.611)
N3: (61.599,175.807,121.577)
N6: (63.509,173.541,118.645)
N7: (60.520,174.227,118.551)
N9: (59.617,175.462,120.211)
O5': (58.223,180.390,120.421)
O3': (56.397,176.855,122.772)
Image (generated by PyMOL):