Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02566:02735
Extra
PDB:
ATOM 1 O3' U A2565 68.573 174.139 113.184 1.00 56.46 O
ATOM 2 P A A2566 66.980 174.135 113.463 1.00 57.47 P
ATOM 3 OP1 A A2566 66.443 172.752 113.328 1.00 56.81 O
ATOM 4 OP2 A A2566 66.385 175.242 112.662 1.00 52.57 O
ATOM 5 O5' A A2566 66.850 174.569 114.992 1.00 56.20 O
ATOM 6 C5' A A2566 67.324 175.857 115.431 1.00 55.48 C
ATOM 7 C4' A A2566 66.188 176.664 116.017 1.00 55.15 C
ATOM 8 O4' A A2566 65.795 176.113 117.305 1.00 54.09 O
ATOM 9 C3' A A2566 66.531 178.102 116.356 1.00 53.97 C
ATOM 10 O3' A A2566 66.505 178.937 115.212 1.00 52.41 O
ATOM 11 C2' A A2566 65.440 178.456 117.349 1.00 53.22 C
ATOM 12 O2' A A2566 64.209 178.692 116.706 1.00 53.59 O
ATOM 13 C1' A A2566 65.363 177.163 118.159 1.00 54.28 C
ATOM 14 N9 A A2566 66.267 177.238 119.305 1.00 56.36 N
ATOM 15 C8 A A2566 67.585 176.861 119.383 1.00 56.95 C
ATOM 16 N7 A A2566 68.144 177.135 120.534 1.00 57.39 N
ATOM 17 C5 A A2566 67.122 177.718 121.270 1.00 57.62 C
ATOM 18 C6 A A2566 67.073 178.245 122.568 1.00 58.44 C
ATOM 19 N6 A A2566 68.127 178.301 123.385 1.00 60.28 N
ATOM 20 N1 A A2566 65.893 178.729 123.005 1.00 57.94 N
ATOM 21 C2 A A2566 64.846 178.694 122.183 1.00 57.70 C
ATOM 22 N3 A A2566 64.769 178.243 120.938 1.00 58.06 N
ATOM 23 C4 A A2566 65.956 177.762 120.535 1.00 57.33 C
ATOM 24 P C A2567 67.821 179.760 114.807 1.00 50.25 P
ATOM 25 OP1 C A2567 67.428 180.701 113.724 1.00 49.21 O
ATOM 26 OP2 C A2567 68.899 178.773 114.570 1.00 49.53 O
ATOM 27 O5' C A2567 68.203 180.579 116.120 1.00 49.68 O
TER
ATOM 1 O3' C B2734 60.867 181.384 120.965 1.00 56.62 O
ATOM 2 P A B2735 59.391 181.866 120.610 1.00 59.13 P
ATOM 3 OP1 A B2735 59.390 182.364 119.201 1.00 58.80 O
ATOM 4 OP2 A B2735 58.953 182.757 121.708 1.00 60.27 O
ATOM 5 O5' A B2735 58.552 180.523 120.730 1.00 58.59 O
ATOM 6 C5' A B2735 58.649 179.744 121.922 1.00 61.19 C
ATOM 7 C4' A B2735 57.963 178.421 121.750 1.00 62.43 C
ATOM 8 O4' A B2735 58.654 177.629 120.735 1.00 63.67 O
ATOM 9 C3' A B2735 57.982 177.568 123.019 1.00 63.13 C
ATOM 10 O3' A B2735 56.701 176.960 123.144 1.00 62.18 O
ATOM 11 C2' A B2735 59.068 176.530 122.714 1.00 64.70 C
ATOM 12 O2' A B2735 58.950 175.311 123.423 1.00 64.48 O
ATOM 13 C1' A B2735 58.811 176.316 121.229 1.00 66.92 C
ATOM 14 N9 A B2735 59.806 175.587 120.435 1.00 69.49 N
ATOM 15 C8 A B2735 59.546 174.909 119.263 1.00 70.95 C
ATOM 16 N7 A B2735 60.600 174.339 118.731 1.00 71.12 N
ATOM 17 C5 A B2735 61.627 174.658 119.608 1.00 70.04 C
ATOM 18 C6 A B2735 62.997 174.361 119.596 1.00 69.27 C
ATOM 19 N6 A B2735 63.595 173.651 118.635 1.00 67.68 N
ATOM 20 N1 A B2735 63.744 174.827 120.615 1.00 70.61 N
ATOM 21 C2 A B2735 63.142 175.546 121.579 1.00 71.23 C
ATOM 22 N3 A B2735 61.865 175.895 121.700 1.00 69.38 N
ATOM 23 C4 A B2735 61.151 175.419 120.669 1.00 69.83 C
ATOM 24 P C B2736 55.515 177.766 123.865 1.00 61.30 P
ATOM 25 OP1 C B2736 54.319 176.882 123.939 1.00 61.62 O
ATOM 26 OP2 C B2736 55.404 179.089 123.196 1.00 60.43 O
ATOM 27 O5' C B2736 56.060 177.987 125.345 1.00 60.22 O
TER
ATOM 2 P A A2566 66.980 174.135 113.463 1.00 57.47 P
ATOM 3 OP1 A A2566 66.443 172.752 113.328 1.00 56.81 O
ATOM 4 OP2 A A2566 66.385 175.242 112.662 1.00 52.57 O
ATOM 5 O5' A A2566 66.850 174.569 114.992 1.00 56.20 O
ATOM 6 C5' A A2566 67.324 175.857 115.431 1.00 55.48 C
ATOM 7 C4' A A2566 66.188 176.664 116.017 1.00 55.15 C
ATOM 8 O4' A A2566 65.795 176.113 117.305 1.00 54.09 O
ATOM 9 C3' A A2566 66.531 178.102 116.356 1.00 53.97 C
ATOM 10 O3' A A2566 66.505 178.937 115.212 1.00 52.41 O
ATOM 11 C2' A A2566 65.440 178.456 117.349 1.00 53.22 C
ATOM 12 O2' A A2566 64.209 178.692 116.706 1.00 53.59 O
ATOM 13 C1' A A2566 65.363 177.163 118.159 1.00 54.28 C
ATOM 14 N9 A A2566 66.267 177.238 119.305 1.00 56.36 N
ATOM 15 C8 A A2566 67.585 176.861 119.383 1.00 56.95 C
ATOM 16 N7 A A2566 68.144 177.135 120.534 1.00 57.39 N
ATOM 17 C5 A A2566 67.122 177.718 121.270 1.00 57.62 C
ATOM 18 C6 A A2566 67.073 178.245 122.568 1.00 58.44 C
ATOM 19 N6 A A2566 68.127 178.301 123.385 1.00 60.28 N
ATOM 20 N1 A A2566 65.893 178.729 123.005 1.00 57.94 N
ATOM 21 C2 A A2566 64.846 178.694 122.183 1.00 57.70 C
ATOM 22 N3 A A2566 64.769 178.243 120.938 1.00 58.06 N
ATOM 23 C4 A A2566 65.956 177.762 120.535 1.00 57.33 C
ATOM 24 P C A2567 67.821 179.760 114.807 1.00 50.25 P
ATOM 25 OP1 C A2567 67.428 180.701 113.724 1.00 49.21 O
ATOM 26 OP2 C A2567 68.899 178.773 114.570 1.00 49.53 O
ATOM 27 O5' C A2567 68.203 180.579 116.120 1.00 49.68 O
TER
ATOM 1 O3' C B2734 60.867 181.384 120.965 1.00 56.62 O
ATOM 2 P A B2735 59.391 181.866 120.610 1.00 59.13 P
ATOM 3 OP1 A B2735 59.390 182.364 119.201 1.00 58.80 O
ATOM 4 OP2 A B2735 58.953 182.757 121.708 1.00 60.27 O
ATOM 5 O5' A B2735 58.552 180.523 120.730 1.00 58.59 O
ATOM 6 C5' A B2735 58.649 179.744 121.922 1.00 61.19 C
ATOM 7 C4' A B2735 57.963 178.421 121.750 1.00 62.43 C
ATOM 8 O4' A B2735 58.654 177.629 120.735 1.00 63.67 O
ATOM 9 C3' A B2735 57.982 177.568 123.019 1.00 63.13 C
ATOM 10 O3' A B2735 56.701 176.960 123.144 1.00 62.18 O
ATOM 11 C2' A B2735 59.068 176.530 122.714 1.00 64.70 C
ATOM 12 O2' A B2735 58.950 175.311 123.423 1.00 64.48 O
ATOM 13 C1' A B2735 58.811 176.316 121.229 1.00 66.92 C
ATOM 14 N9 A B2735 59.806 175.587 120.435 1.00 69.49 N
ATOM 15 C8 A B2735 59.546 174.909 119.263 1.00 70.95 C
ATOM 16 N7 A B2735 60.600 174.339 118.731 1.00 71.12 N
ATOM 17 C5 A B2735 61.627 174.658 119.608 1.00 70.04 C
ATOM 18 C6 A B2735 62.997 174.361 119.596 1.00 69.27 C
ATOM 19 N6 A B2735 63.595 173.651 118.635 1.00 67.68 N
ATOM 20 N1 A B2735 63.744 174.827 120.615 1.00 70.61 N
ATOM 21 C2 A B2735 63.142 175.546 121.579 1.00 71.23 C
ATOM 22 N3 A B2735 61.865 175.895 121.700 1.00 69.38 N
ATOM 23 C4 A B2735 61.151 175.419 120.669 1.00 69.83 C
ATOM 24 P C B2736 55.515 177.766 123.865 1.00 61.30 P
ATOM 25 OP1 C B2736 54.319 176.882 123.939 1.00 61.62 O
ATOM 26 OP2 C B2736 55.404 179.089 123.196 1.00 60.43 O
ATOM 27 O5' C B2736 56.060 177.987 125.345 1.00 60.22 O
TER
Atoms:
OP1: (66.443,172.752,113.328)
OP2: (66.385,175.242,112.662)
C3': (66.531,178.102,116.356)
C1': (65.363,177.163,118.159)
C5': (67.324,175.857,115.431)
O4': (65.795,176.113,117.305)
C8: (67.585,176.861,119.383)
O2': (64.209,178.692,116.706)
C6: (67.073,178.245,122.568)
C5: (67.122,177.718,121.270)
C4: (65.956,177.762,120.535)
P: (66.980,174.135,113.463)
C4': (66.188,176.664,116.017)
C2': (65.440,178.456,117.349)
C2: (64.846,178.694,122.183)
N1: (65.893,178.729,123.005)
N3: (64.769,178.243,120.938)
N6: (68.127,178.301,123.385)
N7: (68.144,177.135,120.534)
N9: (66.267,177.238,119.305)
O5': (66.850,174.569,114.992)
O3': (66.505,178.937,115.212)
OP2: (66.385,175.242,112.662)
C3': (66.531,178.102,116.356)
C1': (65.363,177.163,118.159)
C5': (67.324,175.857,115.431)
O4': (65.795,176.113,117.305)
C8: (67.585,176.861,119.383)
O2': (64.209,178.692,116.706)
C6: (67.073,178.245,122.568)
C5: (67.122,177.718,121.270)
C4: (65.956,177.762,120.535)
P: (66.980,174.135,113.463)
C4': (66.188,176.664,116.017)
C2': (65.440,178.456,117.349)
C2: (64.846,178.694,122.183)
N1: (65.893,178.729,123.005)
N3: (64.769,178.243,120.938)
N6: (68.127,178.301,123.385)
N7: (68.144,177.135,120.534)
N9: (66.267,177.238,119.305)
O5': (66.850,174.569,114.992)
O3': (66.505,178.937,115.212)
OP1: (59.390,182.364,119.201)
OP2: (58.953,182.757,121.708)
C3': (57.982,177.568,123.019)
C1': (58.811,176.316,121.229)
C5': (58.649,179.744,121.922)
O4': (58.654,177.629,120.735)
C8: (59.546,174.909,119.263)
O2': (58.950,175.311,123.423)
C6: (62.997,174.361,119.596)
C5: (61.627,174.658,119.608)
C4: (61.151,175.419,120.669)
P: (59.391,181.866,120.610)
C4': (57.963,178.421,121.750)
C2': (59.068,176.530,122.714)
C2: (63.142,175.546,121.579)
N1: (63.744,174.827,120.615)
N3: (61.865,175.895,121.700)
N6: (63.595,173.651,118.635)
N7: (60.600,174.339,118.731)
N9: (59.806,175.587,120.435)
O5': (58.552,180.523,120.730)
O3': (56.701,176.960,123.144)
OP2: (58.953,182.757,121.708)
C3': (57.982,177.568,123.019)
C1': (58.811,176.316,121.229)
C5': (58.649,179.744,121.922)
O4': (58.654,177.629,120.735)
C8: (59.546,174.909,119.263)
O2': (58.950,175.311,123.423)
C6: (62.997,174.361,119.596)
C5: (61.627,174.658,119.608)
C4: (61.151,175.419,120.669)
P: (59.391,181.866,120.610)
C4': (57.963,178.421,121.750)
C2': (59.068,176.530,122.714)
C2: (63.142,175.546,121.579)
N1: (63.744,174.827,120.615)
N3: (61.865,175.895,121.700)
N6: (63.595,173.651,118.635)
N7: (60.600,174.339,118.731)
N9: (59.806,175.587,120.435)
O5': (58.552,180.523,120.730)
O3': (56.701,176.960,123.144)
Image (generated by PyMOL):