Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2HYI:F3:F4
Extra
PDB:
ATOM 1 O3' U A 2 -39.287 -0.842 35.523 1.00 37.87 O
ATOM 2 P U A 3 -39.353 -0.311 37.031 1.00 36.47 P
ATOM 3 OP1 U A 3 -40.526 0.588 37.122 1.00 37.27 O
ATOM 4 OP2 U A 3 -38.019 0.193 37.415 1.00 39.01 O
ATOM 5 O5' U A 3 -39.691 -1.621 37.872 1.00 37.53 O
ATOM 6 C5' U A 3 -40.973 -2.227 37.749 1.00 36.15 C
ATOM 7 C4' U A 3 -40.925 -3.678 38.158 1.00 36.23 C
ATOM 8 O4' U A 3 -39.977 -4.398 37.326 1.00 35.05 O
ATOM 9 C3' U A 3 -40.429 -3.960 39.564 1.00 36.41 C
ATOM 10 O3' U A 3 -41.461 -3.756 40.505 1.00 34.43 O
ATOM 11 C2' U A 3 -40.068 -5.432 39.465 1.00 35.84 C
ATOM 12 O2' U A 3 -41.214 -6.254 39.529 1.00 36.17 O
ATOM 13 C1' U A 3 -39.452 -5.493 38.065 1.00 38.07 C
ATOM 14 N1 U A 3 -37.993 -5.348 38.140 1.00 41.79 N
ATOM 15 C2 U A 3 -37.261 -6.489 38.374 1.00 42.13 C
ATOM 16 O2 U A 3 -37.775 -7.587 38.480 1.00 43.64 O
ATOM 17 N3 U A 3 -35.909 -6.298 38.476 1.00 43.01 N
ATOM 18 C4 U A 3 -35.233 -5.104 38.354 1.00 43.02 C
ATOM 19 O4 U A 3 -34.010 -5.092 38.439 1.00 43.33 O
ATOM 20 C5 U A 3 -36.062 -3.970 38.099 1.00 41.44 C
ATOM 21 C6 U A 3 -37.380 -4.125 38.003 1.00 40.77 C
ATOM 22 P U A 4 -41.130 -3.020 41.887 1.00 33.95 P
ATOM 23 OP1 U A 4 -42.374 -3.004 42.680 1.00 33.10 O
ATOM 24 OP2 U A 4 -40.454 -1.747 41.565 1.00 32.45 O
ATOM 25 O5' U A 4 -40.089 -3.993 42.607 1.00 37.48 O
TER
ATOM 1 O3' U B 3 -41.461 -3.756 40.505 1.00 34.43 O
ATOM 2 P U B 4 -41.130 -3.020 41.887 1.00 33.95 P
ATOM 3 OP1 U B 4 -42.374 -3.004 42.680 1.00 33.10 O
ATOM 4 OP2 U B 4 -40.454 -1.747 41.565 1.00 32.45 O
ATOM 5 O5' U B 4 -40.089 -3.993 42.607 1.00 37.48 O
ATOM 6 C5' U B 4 -39.372 -3.562 43.764 1.00 38.46 C
ATOM 7 C4' U B 4 -40.125 -3.942 45.014 1.00 41.86 C
ATOM 8 O4' U B 4 -40.294 -5.382 45.052 1.00 45.50 O
ATOM 9 C3' U B 4 -39.422 -3.601 46.317 1.00 43.83 C
ATOM 10 O3' U B 4 -39.728 -2.272 46.713 1.00 44.96 O
ATOM 11 C2' U B 4 -40.021 -4.612 47.284 1.00 45.74 C
ATOM 12 O2' U B 4 -41.278 -4.222 47.797 1.00 45.32 O
ATOM 13 C1' U B 4 -40.163 -5.843 46.386 1.00 48.86 C
ATOM 14 N1 U B 4 -38.975 -6.703 46.448 1.00 53.34 N
ATOM 15 C2 U B 4 -38.739 -7.378 47.620 1.00 57.00 C
ATOM 16 O2 U B 4 -39.471 -7.286 48.590 1.00 57.72 O
ATOM 17 N3 U B 4 -37.612 -8.162 47.620 1.00 59.10 N
ATOM 18 C4 U B 4 -36.719 -8.329 46.584 1.00 60.75 C
ATOM 19 O4 U B 4 -35.744 -9.070 46.733 1.00 61.53 O
ATOM 20 C5 U B 4 -37.038 -7.592 45.401 1.00 58.21 C
ATOM 21 C6 U B 4 -38.130 -6.825 45.376 1.00 56.60 C
ATOM 22 P U B 5 -38.540 -1.254 47.061 1.00 45.38 P
ATOM 23 OP1 U B 5 -39.150 0.063 47.369 1.00 44.55 O
ATOM 24 OP2 U B 5 -37.532 -1.362 45.984 1.00 40.53 O
ATOM 25 O5' U B 5 -37.909 -1.855 48.398 1.00 50.65 O
TER
ATOM 2 P U A 3 -39.353 -0.311 37.031 1.00 36.47 P
ATOM 3 OP1 U A 3 -40.526 0.588 37.122 1.00 37.27 O
ATOM 4 OP2 U A 3 -38.019 0.193 37.415 1.00 39.01 O
ATOM 5 O5' U A 3 -39.691 -1.621 37.872 1.00 37.53 O
ATOM 6 C5' U A 3 -40.973 -2.227 37.749 1.00 36.15 C
ATOM 7 C4' U A 3 -40.925 -3.678 38.158 1.00 36.23 C
ATOM 8 O4' U A 3 -39.977 -4.398 37.326 1.00 35.05 O
ATOM 9 C3' U A 3 -40.429 -3.960 39.564 1.00 36.41 C
ATOM 10 O3' U A 3 -41.461 -3.756 40.505 1.00 34.43 O
ATOM 11 C2' U A 3 -40.068 -5.432 39.465 1.00 35.84 C
ATOM 12 O2' U A 3 -41.214 -6.254 39.529 1.00 36.17 O
ATOM 13 C1' U A 3 -39.452 -5.493 38.065 1.00 38.07 C
ATOM 14 N1 U A 3 -37.993 -5.348 38.140 1.00 41.79 N
ATOM 15 C2 U A 3 -37.261 -6.489 38.374 1.00 42.13 C
ATOM 16 O2 U A 3 -37.775 -7.587 38.480 1.00 43.64 O
ATOM 17 N3 U A 3 -35.909 -6.298 38.476 1.00 43.01 N
ATOM 18 C4 U A 3 -35.233 -5.104 38.354 1.00 43.02 C
ATOM 19 O4 U A 3 -34.010 -5.092 38.439 1.00 43.33 O
ATOM 20 C5 U A 3 -36.062 -3.970 38.099 1.00 41.44 C
ATOM 21 C6 U A 3 -37.380 -4.125 38.003 1.00 40.77 C
ATOM 22 P U A 4 -41.130 -3.020 41.887 1.00 33.95 P
ATOM 23 OP1 U A 4 -42.374 -3.004 42.680 1.00 33.10 O
ATOM 24 OP2 U A 4 -40.454 -1.747 41.565 1.00 32.45 O
ATOM 25 O5' U A 4 -40.089 -3.993 42.607 1.00 37.48 O
TER
ATOM 1 O3' U B 3 -41.461 -3.756 40.505 1.00 34.43 O
ATOM 2 P U B 4 -41.130 -3.020 41.887 1.00 33.95 P
ATOM 3 OP1 U B 4 -42.374 -3.004 42.680 1.00 33.10 O
ATOM 4 OP2 U B 4 -40.454 -1.747 41.565 1.00 32.45 O
ATOM 5 O5' U B 4 -40.089 -3.993 42.607 1.00 37.48 O
ATOM 6 C5' U B 4 -39.372 -3.562 43.764 1.00 38.46 C
ATOM 7 C4' U B 4 -40.125 -3.942 45.014 1.00 41.86 C
ATOM 8 O4' U B 4 -40.294 -5.382 45.052 1.00 45.50 O
ATOM 9 C3' U B 4 -39.422 -3.601 46.317 1.00 43.83 C
ATOM 10 O3' U B 4 -39.728 -2.272 46.713 1.00 44.96 O
ATOM 11 C2' U B 4 -40.021 -4.612 47.284 1.00 45.74 C
ATOM 12 O2' U B 4 -41.278 -4.222 47.797 1.00 45.32 O
ATOM 13 C1' U B 4 -40.163 -5.843 46.386 1.00 48.86 C
ATOM 14 N1 U B 4 -38.975 -6.703 46.448 1.00 53.34 N
ATOM 15 C2 U B 4 -38.739 -7.378 47.620 1.00 57.00 C
ATOM 16 O2 U B 4 -39.471 -7.286 48.590 1.00 57.72 O
ATOM 17 N3 U B 4 -37.612 -8.162 47.620 1.00 59.10 N
ATOM 18 C4 U B 4 -36.719 -8.329 46.584 1.00 60.75 C
ATOM 19 O4 U B 4 -35.744 -9.070 46.733 1.00 61.53 O
ATOM 20 C5 U B 4 -37.038 -7.592 45.401 1.00 58.21 C
ATOM 21 C6 U B 4 -38.130 -6.825 45.376 1.00 56.60 C
ATOM 22 P U B 5 -38.540 -1.254 47.061 1.00 45.38 P
ATOM 23 OP1 U B 5 -39.150 0.063 47.369 1.00 44.55 O
ATOM 24 OP2 U B 5 -37.532 -1.362 45.984 1.00 40.53 O
ATOM 25 O5' U B 5 -37.909 -1.855 48.398 1.00 50.65 O
TER
Atoms:
C4: (-35.233,-5.104,38.354)
N3: (-35.909,-6.298,38.476)
OP1: (-40.526,0.588,37.122)
OP2: (-38.019,0.193,37.415)
C2: (-37.261,-6.489,38.374)
C1': (-39.452,-5.493,38.065)
C3': (-40.429,-3.960,39.564)
O5': (-39.691,-1.621,37.872)
O4': (-39.977,-4.398,37.326)
C5': (-40.973,-2.227,37.749)
P: (-39.353,-0.311,37.031)
C4': (-40.925,-3.678,38.158)
C2': (-40.068,-5.432,39.465)
O2': (-41.214,-6.254,39.529)
N1: (-37.993,-5.348,38.140)
O4: (-34.010,-5.092,38.439)
O2: (-37.775,-7.587,38.480)
C6: (-37.380,-4.125,38.003)
C5: (-36.062,-3.970,38.099)
O3': (-41.461,-3.756,40.505)
N3: (-35.909,-6.298,38.476)
OP1: (-40.526,0.588,37.122)
OP2: (-38.019,0.193,37.415)
C2: (-37.261,-6.489,38.374)
C1': (-39.452,-5.493,38.065)
C3': (-40.429,-3.960,39.564)
O5': (-39.691,-1.621,37.872)
O4': (-39.977,-4.398,37.326)
C5': (-40.973,-2.227,37.749)
P: (-39.353,-0.311,37.031)
C4': (-40.925,-3.678,38.158)
C2': (-40.068,-5.432,39.465)
O2': (-41.214,-6.254,39.529)
N1: (-37.993,-5.348,38.140)
O4: (-34.010,-5.092,38.439)
O2: (-37.775,-7.587,38.480)
C6: (-37.380,-4.125,38.003)
C5: (-36.062,-3.970,38.099)
O3': (-41.461,-3.756,40.505)
C4: (-36.719,-8.329,46.584)
N3: (-37.612,-8.162,47.620)
OP1: (-42.374,-3.004,42.680)
OP2: (-40.454,-1.747,41.565)
C2: (-38.739,-7.378,47.620)
C1': (-40.163,-5.843,46.386)
C3': (-39.422,-3.601,46.317)
O5': (-40.089,-3.993,42.607)
O4': (-40.294,-5.382,45.052)
C5': (-39.372,-3.562,43.764)
P: (-41.130,-3.020,41.887)
C4': (-40.125,-3.942,45.014)
C2': (-40.021,-4.612,47.284)
O2': (-41.278,-4.222,47.797)
N1: (-38.975,-6.703,46.448)
O4: (-35.744,-9.070,46.733)
O2: (-39.471,-7.286,48.590)
C6: (-38.130,-6.825,45.376)
C5: (-37.038,-7.592,45.401)
O3': (-39.728,-2.272,46.713)
N3: (-37.612,-8.162,47.620)
OP1: (-42.374,-3.004,42.680)
OP2: (-40.454,-1.747,41.565)
C2: (-38.739,-7.378,47.620)
C1': (-40.163,-5.843,46.386)
C3': (-39.422,-3.601,46.317)
O5': (-40.089,-3.993,42.607)
O4': (-40.294,-5.382,45.052)
C5': (-39.372,-3.562,43.764)
P: (-41.130,-3.020,41.887)
C4': (-40.125,-3.942,45.014)
C2': (-40.021,-4.612,47.284)
O2': (-41.278,-4.222,47.797)
N1: (-38.975,-6.703,46.448)
O4: (-35.744,-9.070,46.733)
O2: (-39.471,-7.286,48.590)
C6: (-38.130,-6.825,45.376)
C5: (-37.038,-7.592,45.401)
O3': (-39.728,-2.272,46.713)
Image (generated by PyMOL):