Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0577:0575
Extra
PDB:
ATOM 1 O3' G A 576 -7.776 90.171 106.953 1.00 78.12 O
ATOM 2 P U A 577 -8.218 91.126 105.736 1.00 78.62 P
ATOM 3 OP1 U A 577 -8.853 90.288 104.679 1.00 78.22 O
ATOM 4 OP2 U A 577 -7.076 92.002 105.390 1.00 78.40 O
ATOM 5 O5' U A 577 -9.318 92.066 106.404 1.00 78.10 O
ATOM 6 C5' U A 577 -10.572 91.528 106.884 1.00 76.29 C
ATOM 7 C4' U A 577 -11.011 92.257 108.131 1.00 74.20 C
ATOM 8 O4' U A 577 -10.246 91.796 109.272 1.00 72.83 O
ATOM 9 C3' U A 577 -10.789 93.759 108.111 1.00 74.19 C
ATOM 10 O3' U A 577 -11.807 94.448 107.384 1.00 73.24 O
ATOM 11 C2' U A 577 -10.739 94.108 109.597 1.00 74.50 C
ATOM 12 O2' U A 577 -12.008 94.271 110.204 1.00 75.46 O
ATOM 13 C1' U A 577 -10.048 92.869 110.181 1.00 73.07 C
ATOM 14 N1 U A 577 -8.604 93.021 110.435 1.00 72.71 N
ATOM 15 C2 U A 577 -8.196 93.990 111.348 1.00 72.18 C
ATOM 16 O2 U A 577 -8.973 94.723 111.942 1.00 71.57 O
ATOM 17 N3 U A 577 -6.842 94.069 111.538 1.00 70.92 N
ATOM 18 C4 U A 577 -5.871 93.308 110.932 1.00 71.82 C
ATOM 19 O4 U A 577 -4.687 93.518 111.200 1.00 73.15 O
ATOM 20 C5 U A 577 -6.363 92.334 110.008 1.00 71.60 C
ATOM 21 C6 U A 577 -7.675 92.227 109.795 1.00 72.00 C
ATOM 22 P A A 578 -11.408 95.689 106.444 1.00 73.44 P
ATOM 23 OP1 A A 578 -12.590 96.096 105.656 1.00 74.26 O
ATOM 24 OP2 A A 578 -10.158 95.317 105.734 1.00 75.96 O
ATOM 25 O5' A A 578 -11.094 96.859 107.481 1.00 72.49 O
TER
ATOM 1 O3' C B 574 -13.392 89.815 114.740 1.00 75.20 O
ATOM 2 P A B 575 -13.055 90.390 113.279 1.00 76.02 P
ATOM 3 OP1 A B 575 -12.513 91.765 113.448 1.00 75.60 O
ATOM 4 OP2 A B 575 -14.253 90.171 112.420 1.00 75.42 O
ATOM 5 O5' A B 575 -11.894 89.446 112.742 1.00 73.69 O
ATOM 6 C5' A B 575 -11.682 89.291 111.333 1.00 74.86 C
ATOM 7 C4' A B 575 -10.229 89.009 111.041 1.00 74.80 C
ATOM 8 O4' A B 575 -9.417 90.140 111.463 1.00 75.14 O
ATOM 9 C3' A B 575 -9.634 87.783 111.716 1.00 74.63 C
ATOM 10 O3' A B 575 -8.725 87.185 110.807 1.00 76.03 O
ATOM 11 C2' A B 575 -8.919 88.380 112.926 1.00 74.10 C
ATOM 12 O2' A B 575 -7.834 87.607 113.392 1.00 74.82 O
ATOM 13 C1' A B 575 -8.417 89.700 112.359 1.00 73.21 C
ATOM 14 N9 A B 575 -8.204 90.743 113.362 1.00 71.51 N
ATOM 15 C8 A B 575 -9.144 91.502 114.017 1.00 70.72 C
ATOM 16 N7 A B 575 -8.631 92.389 114.836 1.00 69.85 N
ATOM 17 C5 A B 575 -7.260 92.196 114.719 1.00 70.04 C
ATOM 18 C6 A B 575 -6.157 92.827 115.327 1.00 68.68 C
ATOM 19 N6 A B 575 -6.265 93.829 116.202 1.00 68.10 N
ATOM 20 N1 A B 575 -4.923 92.388 114.997 1.00 67.52 N
ATOM 21 C2 A B 575 -4.813 91.390 114.115 1.00 67.29 C
ATOM 22 N3 A B 575 -5.767 90.722 113.474 1.00 68.77 N
ATOM 23 C4 A B 575 -6.984 91.178 113.824 1.00 70.60 C
ATOM 24 P G B 576 -9.211 85.943 109.906 1.00 78.92 P
ATOM 25 OP1 G B 576 -10.692 85.992 109.866 1.00 80.21 O
ATOM 26 OP2 G B 576 -8.532 84.714 110.389 1.00 78.24 O
ATOM 27 O5' G B 576 -8.691 86.289 108.436 1.00 78.64 O
TER
ATOM 2 P U A 577 -8.218 91.126 105.736 1.00 78.62 P
ATOM 3 OP1 U A 577 -8.853 90.288 104.679 1.00 78.22 O
ATOM 4 OP2 U A 577 -7.076 92.002 105.390 1.00 78.40 O
ATOM 5 O5' U A 577 -9.318 92.066 106.404 1.00 78.10 O
ATOM 6 C5' U A 577 -10.572 91.528 106.884 1.00 76.29 C
ATOM 7 C4' U A 577 -11.011 92.257 108.131 1.00 74.20 C
ATOM 8 O4' U A 577 -10.246 91.796 109.272 1.00 72.83 O
ATOM 9 C3' U A 577 -10.789 93.759 108.111 1.00 74.19 C
ATOM 10 O3' U A 577 -11.807 94.448 107.384 1.00 73.24 O
ATOM 11 C2' U A 577 -10.739 94.108 109.597 1.00 74.50 C
ATOM 12 O2' U A 577 -12.008 94.271 110.204 1.00 75.46 O
ATOM 13 C1' U A 577 -10.048 92.869 110.181 1.00 73.07 C
ATOM 14 N1 U A 577 -8.604 93.021 110.435 1.00 72.71 N
ATOM 15 C2 U A 577 -8.196 93.990 111.348 1.00 72.18 C
ATOM 16 O2 U A 577 -8.973 94.723 111.942 1.00 71.57 O
ATOM 17 N3 U A 577 -6.842 94.069 111.538 1.00 70.92 N
ATOM 18 C4 U A 577 -5.871 93.308 110.932 1.00 71.82 C
ATOM 19 O4 U A 577 -4.687 93.518 111.200 1.00 73.15 O
ATOM 20 C5 U A 577 -6.363 92.334 110.008 1.00 71.60 C
ATOM 21 C6 U A 577 -7.675 92.227 109.795 1.00 72.00 C
ATOM 22 P A A 578 -11.408 95.689 106.444 1.00 73.44 P
ATOM 23 OP1 A A 578 -12.590 96.096 105.656 1.00 74.26 O
ATOM 24 OP2 A A 578 -10.158 95.317 105.734 1.00 75.96 O
ATOM 25 O5' A A 578 -11.094 96.859 107.481 1.00 72.49 O
TER
ATOM 1 O3' C B 574 -13.392 89.815 114.740 1.00 75.20 O
ATOM 2 P A B 575 -13.055 90.390 113.279 1.00 76.02 P
ATOM 3 OP1 A B 575 -12.513 91.765 113.448 1.00 75.60 O
ATOM 4 OP2 A B 575 -14.253 90.171 112.420 1.00 75.42 O
ATOM 5 O5' A B 575 -11.894 89.446 112.742 1.00 73.69 O
ATOM 6 C5' A B 575 -11.682 89.291 111.333 1.00 74.86 C
ATOM 7 C4' A B 575 -10.229 89.009 111.041 1.00 74.80 C
ATOM 8 O4' A B 575 -9.417 90.140 111.463 1.00 75.14 O
ATOM 9 C3' A B 575 -9.634 87.783 111.716 1.00 74.63 C
ATOM 10 O3' A B 575 -8.725 87.185 110.807 1.00 76.03 O
ATOM 11 C2' A B 575 -8.919 88.380 112.926 1.00 74.10 C
ATOM 12 O2' A B 575 -7.834 87.607 113.392 1.00 74.82 O
ATOM 13 C1' A B 575 -8.417 89.700 112.359 1.00 73.21 C
ATOM 14 N9 A B 575 -8.204 90.743 113.362 1.00 71.51 N
ATOM 15 C8 A B 575 -9.144 91.502 114.017 1.00 70.72 C
ATOM 16 N7 A B 575 -8.631 92.389 114.836 1.00 69.85 N
ATOM 17 C5 A B 575 -7.260 92.196 114.719 1.00 70.04 C
ATOM 18 C6 A B 575 -6.157 92.827 115.327 1.00 68.68 C
ATOM 19 N6 A B 575 -6.265 93.829 116.202 1.00 68.10 N
ATOM 20 N1 A B 575 -4.923 92.388 114.997 1.00 67.52 N
ATOM 21 C2 A B 575 -4.813 91.390 114.115 1.00 67.29 C
ATOM 22 N3 A B 575 -5.767 90.722 113.474 1.00 68.77 N
ATOM 23 C4 A B 575 -6.984 91.178 113.824 1.00 70.60 C
ATOM 24 P G B 576 -9.211 85.943 109.906 1.00 78.92 P
ATOM 25 OP1 G B 576 -10.692 85.992 109.866 1.00 80.21 O
ATOM 26 OP2 G B 576 -8.532 84.714 110.389 1.00 78.24 O
ATOM 27 O5' G B 576 -8.691 86.289 108.436 1.00 78.64 O
TER
Atoms:
C4: (-5.871,93.308,110.932)
N3: (-6.842,94.069,111.538)
OP1: (-8.853,90.288,104.679)
OP2: (-7.076,92.002,105.390)
C2: (-8.196,93.990,111.348)
C1': (-10.048,92.869,110.181)
C3': (-10.789,93.759,108.111)
O5': (-9.318,92.066,106.404)
O4': (-10.246,91.796,109.272)
C5': (-10.572,91.528,106.884)
P: (-8.218,91.126,105.736)
C4': (-11.011,92.257,108.131)
C2': (-10.739,94.108,109.597)
O2': (-12.008,94.271,110.204)
N1: (-8.604,93.021,110.435)
O4: (-4.687,93.518,111.200)
O2: (-8.973,94.723,111.942)
C6: (-7.675,92.227,109.795)
C5: (-6.363,92.334,110.008)
O3': (-11.807,94.448,107.384)
N3: (-6.842,94.069,111.538)
OP1: (-8.853,90.288,104.679)
OP2: (-7.076,92.002,105.390)
C2: (-8.196,93.990,111.348)
C1': (-10.048,92.869,110.181)
C3': (-10.789,93.759,108.111)
O5': (-9.318,92.066,106.404)
O4': (-10.246,91.796,109.272)
C5': (-10.572,91.528,106.884)
P: (-8.218,91.126,105.736)
C4': (-11.011,92.257,108.131)
C2': (-10.739,94.108,109.597)
O2': (-12.008,94.271,110.204)
N1: (-8.604,93.021,110.435)
O4: (-4.687,93.518,111.200)
O2: (-8.973,94.723,111.942)
C6: (-7.675,92.227,109.795)
C5: (-6.363,92.334,110.008)
O3': (-11.807,94.448,107.384)
OP1: (-12.513,91.765,113.448)
OP2: (-14.253,90.171,112.420)
C3': (-9.634,87.783,111.716)
C1': (-8.417,89.700,112.359)
C5': (-11.682,89.291,111.333)
O4': (-9.417,90.140,111.463)
C8: (-9.144,91.502,114.017)
O2': (-7.834,87.607,113.392)
C6: (-6.157,92.827,115.327)
C5: (-7.260,92.196,114.719)
C4: (-6.984,91.178,113.824)
P: (-13.055,90.390,113.279)
C4': (-10.229,89.009,111.041)
C2': (-8.919,88.380,112.926)
C2: (-4.813,91.390,114.115)
N1: (-4.923,92.388,114.997)
N3: (-5.767,90.722,113.474)
N6: (-6.265,93.829,116.202)
N7: (-8.631,92.389,114.836)
N9: (-8.204,90.743,113.362)
O5': (-11.894,89.446,112.742)
O3': (-8.725,87.185,110.807)
OP2: (-14.253,90.171,112.420)
C3': (-9.634,87.783,111.716)
C1': (-8.417,89.700,112.359)
C5': (-11.682,89.291,111.333)
O4': (-9.417,90.140,111.463)
C8: (-9.144,91.502,114.017)
O2': (-7.834,87.607,113.392)
C6: (-6.157,92.827,115.327)
C5: (-7.260,92.196,114.719)
C4: (-6.984,91.178,113.824)
P: (-13.055,90.390,113.279)
C4': (-10.229,89.009,111.041)
C2': (-8.919,88.380,112.926)
C2: (-4.813,91.390,114.115)
N1: (-4.923,92.388,114.997)
N3: (-5.767,90.722,113.474)
N6: (-6.265,93.829,116.202)
N7: (-8.631,92.389,114.836)
N9: (-8.204,90.743,113.362)
O5': (-11.894,89.446,112.742)
O3': (-8.725,87.185,110.807)
Image (generated by PyMOL):