Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0253:0235
Extra
PDB:
ATOM 1 O3' G A 252 91.519 119.591 3.443 1.00 47.25 O
ATOM 2 P U A 253 90.199 119.334 4.321 1.00 46.58 P
ATOM 3 OP1 U A 253 90.498 119.786 5.702 1.00 46.36 O
ATOM 4 OP2 U A 253 89.747 117.938 4.087 1.00 45.37 O
ATOM 5 O5' U A 253 89.110 120.304 3.686 1.00 46.89 O
ATOM 6 C5' U A 253 88.986 121.674 4.102 1.00 47.05 C
ATOM 7 C4' U A 253 88.568 122.523 2.930 1.00 47.78 C
ATOM 8 O4' U A 253 89.687 122.663 2.016 1.00 48.64 O
ATOM 9 C3' U A 253 87.472 121.904 2.087 1.00 48.52 C
ATOM 10 O3' U A 253 86.184 122.140 2.628 1.00 49.27 O
ATOM 11 C2' U A 253 87.690 122.547 0.724 1.00 48.16 C
ATOM 12 O2' U A 253 87.126 123.839 0.610 1.00 48.13 O
ATOM 13 C1' U A 253 89.220 122.629 0.676 1.00 47.81 C
ATOM 14 N1 U A 253 89.858 121.491 -0.005 1.00 47.33 N
ATOM 15 C2 U A 253 89.617 121.330 -1.361 1.00 47.94 C
ATOM 16 O2 U A 253 88.917 122.093 -2.012 1.00 49.03 O
ATOM 17 N3 U A 253 90.229 120.243 -1.930 1.00 46.81 N
ATOM 18 C4 U A 253 91.038 119.325 -1.308 1.00 47.40 C
ATOM 19 O4 U A 253 91.498 118.387 -1.961 1.00 47.44 O
ATOM 20 C5 U A 253 91.248 119.562 0.089 1.00 47.80 C
ATOM 21 C6 U A 253 90.667 120.609 0.677 1.00 46.31 C
ATOM 22 P G A 254 85.089 120.969 2.593 1.00 51.32 P
ATOM 23 OP1 G A 254 83.779 121.561 2.990 1.00 49.96 O
ATOM 24 OP2 G A 254 85.641 119.814 3.346 1.00 49.18 O
ATOM 25 O5' G A 254 85.008 120.549 1.057 1.00 52.10 O
TER
ATOM 1 O3' G B 234 94.178 117.939 -7.747 1.00 61.74 O
ATOM 2 P A B 235 94.784 118.936 -8.852 1.00 59.51 P
ATOM 3 OP1 A B 235 94.489 118.372 -10.190 1.00 61.07 O
ATOM 4 OP2 A B 235 96.190 119.225 -8.473 1.00 59.33 O
ATOM 5 O5' A B 235 93.932 120.265 -8.673 1.00 58.09 O
ATOM 6 C5' A B 235 92.527 120.301 -8.982 1.00 56.77 C
ATOM 7 C4' A B 235 91.877 121.448 -8.247 1.00 57.52 C
ATOM 8 O4' A B 235 91.794 121.130 -6.829 1.00 57.67 O
ATOM 9 C3' A B 235 92.642 122.766 -8.330 1.00 57.00 C
ATOM 10 O3' A B 235 91.721 123.834 -8.215 1.00 57.89 O
ATOM 11 C2' A B 235 93.491 122.725 -7.067 1.00 56.85 C
ATOM 12 O2' A B 235 93.916 123.998 -6.631 1.00 54.59 O
ATOM 13 C1' A B 235 92.498 122.105 -6.087 1.00 57.43 C
ATOM 14 N9 A B 235 93.100 121.460 -4.923 1.00 58.07 N
ATOM 15 C8 A B 235 93.864 120.320 -4.870 1.00 58.74 C
ATOM 16 N7 A B 235 94.259 120.005 -3.661 1.00 58.50 N
ATOM 17 C5 A B 235 93.715 121.004 -2.864 1.00 58.02 C
ATOM 18 C6 A B 235 93.772 121.245 -1.486 1.00 56.89 C
ATOM 19 N6 A B 235 94.432 120.470 -0.625 1.00 56.62 N
ATOM 20 N1 A B 235 93.122 122.328 -1.014 1.00 57.08 N
ATOM 21 C2 A B 235 92.468 123.111 -1.875 1.00 57.35 C
ATOM 22 N3 A B 235 92.343 122.992 -3.189 1.00 57.90 N
ATOM 23 C4 A B 235 92.999 121.904 -3.628 1.00 58.12 C
ATOM 24 P A B 236 91.347 124.703 -9.502 1.00 59.50 P
ATOM 25 OP1 A B 236 92.412 124.478 -10.517 1.00 59.25 O
ATOM 26 OP2 A B 236 91.056 126.083 -9.031 1.00 59.33 O
ATOM 27 O5' A B 236 89.989 124.052 -10.032 1.00 57.95 O
TER
ATOM 2 P U A 253 90.199 119.334 4.321 1.00 46.58 P
ATOM 3 OP1 U A 253 90.498 119.786 5.702 1.00 46.36 O
ATOM 4 OP2 U A 253 89.747 117.938 4.087 1.00 45.37 O
ATOM 5 O5' U A 253 89.110 120.304 3.686 1.00 46.89 O
ATOM 6 C5' U A 253 88.986 121.674 4.102 1.00 47.05 C
ATOM 7 C4' U A 253 88.568 122.523 2.930 1.00 47.78 C
ATOM 8 O4' U A 253 89.687 122.663 2.016 1.00 48.64 O
ATOM 9 C3' U A 253 87.472 121.904 2.087 1.00 48.52 C
ATOM 10 O3' U A 253 86.184 122.140 2.628 1.00 49.27 O
ATOM 11 C2' U A 253 87.690 122.547 0.724 1.00 48.16 C
ATOM 12 O2' U A 253 87.126 123.839 0.610 1.00 48.13 O
ATOM 13 C1' U A 253 89.220 122.629 0.676 1.00 47.81 C
ATOM 14 N1 U A 253 89.858 121.491 -0.005 1.00 47.33 N
ATOM 15 C2 U A 253 89.617 121.330 -1.361 1.00 47.94 C
ATOM 16 O2 U A 253 88.917 122.093 -2.012 1.00 49.03 O
ATOM 17 N3 U A 253 90.229 120.243 -1.930 1.00 46.81 N
ATOM 18 C4 U A 253 91.038 119.325 -1.308 1.00 47.40 C
ATOM 19 O4 U A 253 91.498 118.387 -1.961 1.00 47.44 O
ATOM 20 C5 U A 253 91.248 119.562 0.089 1.00 47.80 C
ATOM 21 C6 U A 253 90.667 120.609 0.677 1.00 46.31 C
ATOM 22 P G A 254 85.089 120.969 2.593 1.00 51.32 P
ATOM 23 OP1 G A 254 83.779 121.561 2.990 1.00 49.96 O
ATOM 24 OP2 G A 254 85.641 119.814 3.346 1.00 49.18 O
ATOM 25 O5' G A 254 85.008 120.549 1.057 1.00 52.10 O
TER
ATOM 1 O3' G B 234 94.178 117.939 -7.747 1.00 61.74 O
ATOM 2 P A B 235 94.784 118.936 -8.852 1.00 59.51 P
ATOM 3 OP1 A B 235 94.489 118.372 -10.190 1.00 61.07 O
ATOM 4 OP2 A B 235 96.190 119.225 -8.473 1.00 59.33 O
ATOM 5 O5' A B 235 93.932 120.265 -8.673 1.00 58.09 O
ATOM 6 C5' A B 235 92.527 120.301 -8.982 1.00 56.77 C
ATOM 7 C4' A B 235 91.877 121.448 -8.247 1.00 57.52 C
ATOM 8 O4' A B 235 91.794 121.130 -6.829 1.00 57.67 O
ATOM 9 C3' A B 235 92.642 122.766 -8.330 1.00 57.00 C
ATOM 10 O3' A B 235 91.721 123.834 -8.215 1.00 57.89 O
ATOM 11 C2' A B 235 93.491 122.725 -7.067 1.00 56.85 C
ATOM 12 O2' A B 235 93.916 123.998 -6.631 1.00 54.59 O
ATOM 13 C1' A B 235 92.498 122.105 -6.087 1.00 57.43 C
ATOM 14 N9 A B 235 93.100 121.460 -4.923 1.00 58.07 N
ATOM 15 C8 A B 235 93.864 120.320 -4.870 1.00 58.74 C
ATOM 16 N7 A B 235 94.259 120.005 -3.661 1.00 58.50 N
ATOM 17 C5 A B 235 93.715 121.004 -2.864 1.00 58.02 C
ATOM 18 C6 A B 235 93.772 121.245 -1.486 1.00 56.89 C
ATOM 19 N6 A B 235 94.432 120.470 -0.625 1.00 56.62 N
ATOM 20 N1 A B 235 93.122 122.328 -1.014 1.00 57.08 N
ATOM 21 C2 A B 235 92.468 123.111 -1.875 1.00 57.35 C
ATOM 22 N3 A B 235 92.343 122.992 -3.189 1.00 57.90 N
ATOM 23 C4 A B 235 92.999 121.904 -3.628 1.00 58.12 C
ATOM 24 P A B 236 91.347 124.703 -9.502 1.00 59.50 P
ATOM 25 OP1 A B 236 92.412 124.478 -10.517 1.00 59.25 O
ATOM 26 OP2 A B 236 91.056 126.083 -9.031 1.00 59.33 O
ATOM 27 O5' A B 236 89.989 124.052 -10.032 1.00 57.95 O
TER
Atoms:
C4: (91.038,119.325,-1.308)
N3: (90.229,120.243,-1.930)
OP1: (90.498,119.786,5.702)
OP2: (89.747,117.938,4.087)
C2: (89.617,121.330,-1.361)
C1': (89.220,122.629,0.676)
C3': (87.472,121.904,2.087)
O5': (89.110,120.304,3.686)
O4': (89.687,122.663,2.016)
C5': (88.986,121.674,4.102)
P: (90.199,119.334,4.321)
C4': (88.568,122.523,2.930)
C2': (87.690,122.547,0.724)
O2': (87.126,123.839,0.610)
N1: (89.858,121.491,-0.005)
O4: (91.498,118.387,-1.961)
O2: (88.917,122.093,-2.012)
C6: (90.667,120.609,0.677)
C5: (91.248,119.562,0.089)
O3': (86.184,122.140,2.628)
N3: (90.229,120.243,-1.930)
OP1: (90.498,119.786,5.702)
OP2: (89.747,117.938,4.087)
C2: (89.617,121.330,-1.361)
C1': (89.220,122.629,0.676)
C3': (87.472,121.904,2.087)
O5': (89.110,120.304,3.686)
O4': (89.687,122.663,2.016)
C5': (88.986,121.674,4.102)
P: (90.199,119.334,4.321)
C4': (88.568,122.523,2.930)
C2': (87.690,122.547,0.724)
O2': (87.126,123.839,0.610)
N1: (89.858,121.491,-0.005)
O4: (91.498,118.387,-1.961)
O2: (88.917,122.093,-2.012)
C6: (90.667,120.609,0.677)
C5: (91.248,119.562,0.089)
O3': (86.184,122.140,2.628)
OP1: (94.489,118.372,-10.190)
OP2: (96.190,119.225,-8.473)
C3': (92.642,122.766,-8.330)
C1': (92.498,122.105,-6.087)
C5': (92.527,120.301,-8.982)
O4': (91.794,121.130,-6.829)
C8: (93.864,120.320,-4.870)
O2': (93.916,123.998,-6.631)
C6: (93.772,121.245,-1.486)
C5: (93.715,121.004,-2.864)
C4: (92.999,121.904,-3.628)
P: (94.784,118.936,-8.852)
C4': (91.877,121.448,-8.247)
C2': (93.491,122.725,-7.067)
C2: (92.468,123.111,-1.875)
N1: (93.122,122.328,-1.014)
N3: (92.343,122.992,-3.189)
N6: (94.432,120.470,-0.625)
N7: (94.259,120.005,-3.661)
N9: (93.100,121.460,-4.923)
O5': (93.932,120.265,-8.673)
O3': (91.721,123.834,-8.215)
OP2: (96.190,119.225,-8.473)
C3': (92.642,122.766,-8.330)
C1': (92.498,122.105,-6.087)
C5': (92.527,120.301,-8.982)
O4': (91.794,121.130,-6.829)
C8: (93.864,120.320,-4.870)
O2': (93.916,123.998,-6.631)
C6: (93.772,121.245,-1.486)
C5: (93.715,121.004,-2.864)
C4: (92.999,121.904,-3.628)
P: (94.784,118.936,-8.852)
C4': (91.877,121.448,-8.247)
C2': (93.491,122.725,-7.067)
C2: (92.468,123.111,-1.875)
N1: (93.122,122.328,-1.014)
N3: (92.343,122.992,-3.189)
N6: (94.432,120.470,-0.625)
N7: (94.259,120.005,-3.661)
N9: (93.100,121.460,-4.923)
O5': (93.932,120.265,-8.673)
O3': (91.721,123.834,-8.215)
Image (generated by PyMOL):