Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12348:12347
Extra
PDB:
ATOM 1 O3' A A2347 9.040 -28.387 123.165 1.00 61.35 O
ATOM 2 P U A2348 10.208 -28.769 122.149 1.00 55.24 P
ATOM 3 OP1 U A2348 9.905 -28.067 120.869 1.00 54.79 O
ATOM 4 OP2 U A2348 10.316 -30.252 122.141 1.00 55.38 O
ATOM 5 O5' U A2348 11.518 -28.137 122.841 1.00 55.29 O
ATOM 6 C5' U A2348 11.624 -26.751 123.100 1.00 55.24 C
ATOM 7 C4' U A2348 12.647 -26.457 124.175 1.00 55.49 C
ATOM 8 O4' U A2348 12.403 -27.282 125.343 1.00 55.99 O
ATOM 9 C3' U A2348 14.103 -26.746 123.847 1.00 55.28 C
ATOM 10 O3' U A2348 14.700 -25.745 123.055 1.00 54.88 O
ATOM 11 C2' U A2348 14.723 -26.842 125.222 1.00 55.72 C
ATOM 12 O2' U A2348 14.887 -25.544 125.766 1.00 55.79 O
ATOM 13 C1' U A2348 13.623 -27.543 126.006 1.00 56.14 C
ATOM 14 N1 U A2348 13.820 -28.992 126.063 1.00 56.28 N
ATOM 15 C2 U A2348 14.862 -29.539 126.779 1.00 56.51 C
ATOM 16 O2 U A2348 15.698 -28.862 127.373 1.00 56.60 O
ATOM 17 N3 U A2348 14.893 -30.917 126.743 1.00 56.64 N
ATOM 18 C4 U A2348 14.004 -31.753 126.085 1.00 56.56 C
ATOM 19 O4 U A2348 14.112 -32.978 126.117 1.00 56.71 O
ATOM 20 C5 U A2348 12.967 -31.095 125.388 1.00 56.33 C
ATOM 21 C6 U A2348 12.924 -29.776 125.405 1.00 56.20 C
ATOM 22 P U A2349 15.202 -26.114 121.568 1.00 60.87 P
ATOM 23 OP1 U A2349 15.273 -24.841 120.784 1.00 60.51 O
ATOM 24 OP2 U A2349 14.314 -27.195 121.064 1.00 60.87 O
ATOM 25 O5' U A2349 16.668 -26.694 121.844 1.00 60.90 O
TER
ATOM 1 O3' C B2346 6.780 -34.527 125.213 1.00 59.67 O
ATOM 2 P A B2347 7.774 -33.762 124.229 1.00 62.42 P
ATOM 3 OP1 A B2347 7.389 -34.124 122.845 1.00 62.05 O
ATOM 4 OP2 A B2347 9.145 -34.068 124.693 1.00 62.47 O
ATOM 5 O5' A B2347 7.433 -32.241 124.501 1.00 62.37 O
ATOM 6 C5' A B2347 8.357 -31.258 124.142 1.00 62.04 C
ATOM 7 C4' A B2347 8.040 -29.935 124.739 1.00 62.13 C
ATOM 8 O4' A B2347 8.019 -30.016 126.190 1.00 62.65 O
ATOM 9 C3' A B2347 9.074 -28.871 124.479 1.00 61.83 C
ATOM 10 O3' A B2347 9.040 -28.387 123.165 1.00 61.35 O
ATOM 11 C2' A B2347 8.714 -27.843 125.522 1.00 62.14 C
ATOM 12 O2' A B2347 7.475 -27.214 125.182 1.00 62.10 O
ATOM 13 C1' A B2347 8.473 -28.768 126.717 1.00 62.66 C
ATOM 14 N9 A B2347 9.720 -28.973 127.533 1.00 62.85 N
ATOM 15 C8 A B2347 10.451 -27.991 128.241 1.00 62.95 C
ATOM 16 N7 A B2347 11.517 -28.381 128.923 1.00 63.14 N
ATOM 17 C5 A B2347 11.483 -29.724 128.632 1.00 63.16 C
ATOM 18 C6 A B2347 12.354 -30.703 129.041 1.00 63.34 C
ATOM 19 N6 A B2347 13.387 -30.435 129.820 1.00 63.52 N
ATOM 20 N1 A B2347 12.072 -31.953 128.598 1.00 63.34 N
ATOM 21 C2 A B2347 10.994 -32.158 127.796 1.00 63.16 C
ATOM 22 N3 A B2347 10.108 -31.330 127.315 1.00 62.98 N
ATOM 23 C4 A B2347 10.420 -30.121 127.788 1.00 62.99 C
ATOM 24 P U B2348 10.208 -28.769 122.149 1.00 55.24 P
ATOM 25 OP1 U B2348 9.905 -28.067 120.869 1.00 54.79 O
ATOM 26 OP2 U B2348 10.316 -30.252 122.141 1.00 55.38 O
ATOM 27 O5' U B2348 11.518 -28.137 122.841 1.00 55.29 O
TER
ATOM 2 P U A2348 10.208 -28.769 122.149 1.00 55.24 P
ATOM 3 OP1 U A2348 9.905 -28.067 120.869 1.00 54.79 O
ATOM 4 OP2 U A2348 10.316 -30.252 122.141 1.00 55.38 O
ATOM 5 O5' U A2348 11.518 -28.137 122.841 1.00 55.29 O
ATOM 6 C5' U A2348 11.624 -26.751 123.100 1.00 55.24 C
ATOM 7 C4' U A2348 12.647 -26.457 124.175 1.00 55.49 C
ATOM 8 O4' U A2348 12.403 -27.282 125.343 1.00 55.99 O
ATOM 9 C3' U A2348 14.103 -26.746 123.847 1.00 55.28 C
ATOM 10 O3' U A2348 14.700 -25.745 123.055 1.00 54.88 O
ATOM 11 C2' U A2348 14.723 -26.842 125.222 1.00 55.72 C
ATOM 12 O2' U A2348 14.887 -25.544 125.766 1.00 55.79 O
ATOM 13 C1' U A2348 13.623 -27.543 126.006 1.00 56.14 C
ATOM 14 N1 U A2348 13.820 -28.992 126.063 1.00 56.28 N
ATOM 15 C2 U A2348 14.862 -29.539 126.779 1.00 56.51 C
ATOM 16 O2 U A2348 15.698 -28.862 127.373 1.00 56.60 O
ATOM 17 N3 U A2348 14.893 -30.917 126.743 1.00 56.64 N
ATOM 18 C4 U A2348 14.004 -31.753 126.085 1.00 56.56 C
ATOM 19 O4 U A2348 14.112 -32.978 126.117 1.00 56.71 O
ATOM 20 C5 U A2348 12.967 -31.095 125.388 1.00 56.33 C
ATOM 21 C6 U A2348 12.924 -29.776 125.405 1.00 56.20 C
ATOM 22 P U A2349 15.202 -26.114 121.568 1.00 60.87 P
ATOM 23 OP1 U A2349 15.273 -24.841 120.784 1.00 60.51 O
ATOM 24 OP2 U A2349 14.314 -27.195 121.064 1.00 60.87 O
ATOM 25 O5' U A2349 16.668 -26.694 121.844 1.00 60.90 O
TER
ATOM 1 O3' C B2346 6.780 -34.527 125.213 1.00 59.67 O
ATOM 2 P A B2347 7.774 -33.762 124.229 1.00 62.42 P
ATOM 3 OP1 A B2347 7.389 -34.124 122.845 1.00 62.05 O
ATOM 4 OP2 A B2347 9.145 -34.068 124.693 1.00 62.47 O
ATOM 5 O5' A B2347 7.433 -32.241 124.501 1.00 62.37 O
ATOM 6 C5' A B2347 8.357 -31.258 124.142 1.00 62.04 C
ATOM 7 C4' A B2347 8.040 -29.935 124.739 1.00 62.13 C
ATOM 8 O4' A B2347 8.019 -30.016 126.190 1.00 62.65 O
ATOM 9 C3' A B2347 9.074 -28.871 124.479 1.00 61.83 C
ATOM 10 O3' A B2347 9.040 -28.387 123.165 1.00 61.35 O
ATOM 11 C2' A B2347 8.714 -27.843 125.522 1.00 62.14 C
ATOM 12 O2' A B2347 7.475 -27.214 125.182 1.00 62.10 O
ATOM 13 C1' A B2347 8.473 -28.768 126.717 1.00 62.66 C
ATOM 14 N9 A B2347 9.720 -28.973 127.533 1.00 62.85 N
ATOM 15 C8 A B2347 10.451 -27.991 128.241 1.00 62.95 C
ATOM 16 N7 A B2347 11.517 -28.381 128.923 1.00 63.14 N
ATOM 17 C5 A B2347 11.483 -29.724 128.632 1.00 63.16 C
ATOM 18 C6 A B2347 12.354 -30.703 129.041 1.00 63.34 C
ATOM 19 N6 A B2347 13.387 -30.435 129.820 1.00 63.52 N
ATOM 20 N1 A B2347 12.072 -31.953 128.598 1.00 63.34 N
ATOM 21 C2 A B2347 10.994 -32.158 127.796 1.00 63.16 C
ATOM 22 N3 A B2347 10.108 -31.330 127.315 1.00 62.98 N
ATOM 23 C4 A B2347 10.420 -30.121 127.788 1.00 62.99 C
ATOM 24 P U B2348 10.208 -28.769 122.149 1.00 55.24 P
ATOM 25 OP1 U B2348 9.905 -28.067 120.869 1.00 54.79 O
ATOM 26 OP2 U B2348 10.316 -30.252 122.141 1.00 55.38 O
ATOM 27 O5' U B2348 11.518 -28.137 122.841 1.00 55.29 O
TER
Atoms:
C4: (14.004,-31.753,126.085)
N3: (14.893,-30.917,126.743)
OP1: (9.905,-28.067,120.869)
OP2: (10.316,-30.252,122.141)
C2: (14.862,-29.539,126.779)
C1': (13.623,-27.543,126.006)
C3': (14.103,-26.746,123.847)
O5': (11.518,-28.137,122.841)
O4': (12.403,-27.282,125.343)
C5': (11.624,-26.751,123.100)
P: (10.208,-28.769,122.149)
C4': (12.647,-26.457,124.175)
C2': (14.723,-26.842,125.222)
O2': (14.887,-25.544,125.766)
N1: (13.820,-28.992,126.063)
O4: (14.112,-32.978,126.117)
O2: (15.698,-28.862,127.373)
C6: (12.924,-29.776,125.405)
C5: (12.967,-31.095,125.388)
O3': (14.700,-25.745,123.055)
N3: (14.893,-30.917,126.743)
OP1: (9.905,-28.067,120.869)
OP2: (10.316,-30.252,122.141)
C2: (14.862,-29.539,126.779)
C1': (13.623,-27.543,126.006)
C3': (14.103,-26.746,123.847)
O5': (11.518,-28.137,122.841)
O4': (12.403,-27.282,125.343)
C5': (11.624,-26.751,123.100)
P: (10.208,-28.769,122.149)
C4': (12.647,-26.457,124.175)
C2': (14.723,-26.842,125.222)
O2': (14.887,-25.544,125.766)
N1: (13.820,-28.992,126.063)
O4: (14.112,-32.978,126.117)
O2: (15.698,-28.862,127.373)
C6: (12.924,-29.776,125.405)
C5: (12.967,-31.095,125.388)
O3': (14.700,-25.745,123.055)
OP1: (7.389,-34.124,122.845)
OP2: (9.145,-34.068,124.693)
C3': (9.074,-28.871,124.479)
C1': (8.473,-28.768,126.717)
C5': (8.357,-31.258,124.142)
O4': (8.019,-30.016,126.190)
C8: (10.451,-27.991,128.241)
O2': (7.475,-27.214,125.182)
C6: (12.354,-30.703,129.041)
C5: (11.483,-29.724,128.632)
C4: (10.420,-30.121,127.788)
P: (7.774,-33.762,124.229)
C4': (8.040,-29.935,124.739)
C2': (8.714,-27.843,125.522)
C2: (10.994,-32.158,127.796)
N1: (12.072,-31.953,128.598)
N3: (10.108,-31.330,127.315)
N6: (13.387,-30.435,129.820)
N7: (11.517,-28.381,128.923)
N9: (9.720,-28.973,127.533)
O5': (7.433,-32.241,124.501)
O3': (9.040,-28.387,123.165)
OP2: (9.145,-34.068,124.693)
C3': (9.074,-28.871,124.479)
C1': (8.473,-28.768,126.717)
C5': (8.357,-31.258,124.142)
O4': (8.019,-30.016,126.190)
C8: (10.451,-27.991,128.241)
O2': (7.475,-27.214,125.182)
C6: (12.354,-30.703,129.041)
C5: (11.483,-29.724,128.632)
C4: (10.420,-30.121,127.788)
P: (7.774,-33.762,124.229)
C4': (8.040,-29.935,124.739)
C2': (8.714,-27.843,125.522)
C2: (10.994,-32.158,127.796)
N1: (12.072,-31.953,128.598)
N3: (10.108,-31.330,127.315)
N6: (13.387,-30.435,129.820)
N7: (11.517,-28.381,128.923)
N9: (9.720,-28.973,127.533)
O5': (7.433,-32.241,124.501)
O3': (9.040,-28.387,123.165)
Image (generated by PyMOL):