Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02079:02105
Extra
PDB:
ATOM 1 O3' C A2078 109.833 111.209 32.265 1.00 64.49 O
ATOM 2 P U A2079 111.293 111.249 31.583 1.00 66.72 P
ATOM 3 OP1 U A2079 111.911 112.546 31.963 1.00 66.28 O
ATOM 4 OP2 U A2079 111.123 110.905 30.136 1.00 63.98 O
ATOM 5 O5' U A2079 112.154 110.075 32.227 1.00 65.20 O
ATOM 6 C5' U A2079 113.344 109.633 31.550 1.00 66.52 C
ATOM 7 C4' U A2079 113.912 108.409 32.206 1.00 67.58 C
ATOM 8 O4' U A2079 114.458 108.768 33.497 1.00 67.54 O
ATOM 9 C3' U A2079 112.934 107.273 32.453 1.00 69.84 C
ATOM 10 O3' U A2079 113.657 106.045 32.385 1.00 75.48 O
ATOM 11 C2' U A2079 112.509 107.535 33.898 1.00 68.83 C
ATOM 12 O2' U A2079 112.061 106.386 34.582 1.00 68.26 O
ATOM 13 C1' U A2079 113.828 108.006 34.501 1.00 67.17 C
ATOM 14 N1 U A2079 113.737 108.832 35.713 1.00 65.47 N
ATOM 15 C2 U A2079 114.282 108.317 36.870 1.00 64.40 C
ATOM 16 O2 U A2079 114.737 107.188 36.944 1.00 65.24 O
ATOM 17 N3 U A2079 114.267 109.166 37.944 1.00 63.79 N
ATOM 18 C4 U A2079 113.749 110.440 37.987 1.00 64.97 C
ATOM 19 O4 U A2079 113.887 111.112 39.012 1.00 67.55 O
ATOM 20 C5 U A2079 113.151 110.883 36.764 1.00 64.07 C
ATOM 21 C6 U A2079 113.165 110.085 35.696 1.00 65.16 C
ATOM 22 P G A2080 114.012 105.388 30.956 1.00 78.70 P
ATOM 23 OP1 G A2080 113.011 105.854 29.955 1.00 76.87 O
ATOM 24 OP2 G A2080 114.184 103.926 31.200 1.00 77.11 O
ATOM 25 O5' G A2080 115.446 106.010 30.607 1.00 81.20 O
TER
ATOM 1 O3' A B2104 117.104 108.575 39.617 1.00 80.87 O
ATOM 2 P C B2105 116.376 107.553 40.636 1.00 80.89 P
ATOM 3 OP1 C B2105 117.179 106.298 40.735 1.00 80.54 O
ATOM 4 OP2 C B2105 114.945 107.467 40.236 1.00 79.50 O
ATOM 5 O5' C B2105 116.448 108.329 42.031 1.00 78.06 O
ATOM 6 C5' C B2105 117.291 107.859 43.105 1.00 74.27 C
ATOM 7 C4' C B2105 117.739 109.013 43.978 1.00 72.08 C
ATOM 8 O4' C B2105 118.539 109.935 43.193 1.00 70.56 O
ATOM 9 C3' C B2105 116.659 109.912 44.557 1.00 71.06 C
ATOM 10 O3' C B2105 116.018 109.361 45.697 1.00 71.37 O
ATOM 11 C2' C B2105 117.445 111.168 44.907 1.00 69.26 C
ATOM 12 O2' C B2105 118.174 111.065 46.114 1.00 69.64 O
ATOM 13 C1' C B2105 118.406 111.248 43.721 1.00 66.93 C
ATOM 14 N1 C B2105 117.898 112.138 42.666 1.00 63.39 N
ATOM 15 C2 C B2105 118.003 113.523 42.856 1.00 62.66 C
ATOM 16 O2 C B2105 118.530 113.949 43.900 1.00 62.38 O
ATOM 17 N3 C B2105 117.529 114.359 41.906 1.00 61.35 N
ATOM 18 C4 C B2105 116.973 113.862 40.799 1.00 61.32 C
ATOM 19 N4 C B2105 116.518 114.730 39.888 1.00 60.36 N
ATOM 20 C5 C B2105 116.858 112.457 40.575 1.00 60.77 C
ATOM 21 C6 C B2105 117.329 111.640 41.526 1.00 61.61 C
ATOM 22 P A B2106 114.466 109.681 45.956 1.00 70.97 P
ATOM 23 OP1 A B2106 114.092 109.073 47.259 1.00 71.48 O
ATOM 24 OP2 A B2106 113.717 109.293 44.724 1.00 69.87 O
ATOM 25 O5' A B2106 114.437 111.270 46.105 1.00 68.19 O
TER
ATOM 2 P U A2079 111.293 111.249 31.583 1.00 66.72 P
ATOM 3 OP1 U A2079 111.911 112.546 31.963 1.00 66.28 O
ATOM 4 OP2 U A2079 111.123 110.905 30.136 1.00 63.98 O
ATOM 5 O5' U A2079 112.154 110.075 32.227 1.00 65.20 O
ATOM 6 C5' U A2079 113.344 109.633 31.550 1.00 66.52 C
ATOM 7 C4' U A2079 113.912 108.409 32.206 1.00 67.58 C
ATOM 8 O4' U A2079 114.458 108.768 33.497 1.00 67.54 O
ATOM 9 C3' U A2079 112.934 107.273 32.453 1.00 69.84 C
ATOM 10 O3' U A2079 113.657 106.045 32.385 1.00 75.48 O
ATOM 11 C2' U A2079 112.509 107.535 33.898 1.00 68.83 C
ATOM 12 O2' U A2079 112.061 106.386 34.582 1.00 68.26 O
ATOM 13 C1' U A2079 113.828 108.006 34.501 1.00 67.17 C
ATOM 14 N1 U A2079 113.737 108.832 35.713 1.00 65.47 N
ATOM 15 C2 U A2079 114.282 108.317 36.870 1.00 64.40 C
ATOM 16 O2 U A2079 114.737 107.188 36.944 1.00 65.24 O
ATOM 17 N3 U A2079 114.267 109.166 37.944 1.00 63.79 N
ATOM 18 C4 U A2079 113.749 110.440 37.987 1.00 64.97 C
ATOM 19 O4 U A2079 113.887 111.112 39.012 1.00 67.55 O
ATOM 20 C5 U A2079 113.151 110.883 36.764 1.00 64.07 C
ATOM 21 C6 U A2079 113.165 110.085 35.696 1.00 65.16 C
ATOM 22 P G A2080 114.012 105.388 30.956 1.00 78.70 P
ATOM 23 OP1 G A2080 113.011 105.854 29.955 1.00 76.87 O
ATOM 24 OP2 G A2080 114.184 103.926 31.200 1.00 77.11 O
ATOM 25 O5' G A2080 115.446 106.010 30.607 1.00 81.20 O
TER
ATOM 1 O3' A B2104 117.104 108.575 39.617 1.00 80.87 O
ATOM 2 P C B2105 116.376 107.553 40.636 1.00 80.89 P
ATOM 3 OP1 C B2105 117.179 106.298 40.735 1.00 80.54 O
ATOM 4 OP2 C B2105 114.945 107.467 40.236 1.00 79.50 O
ATOM 5 O5' C B2105 116.448 108.329 42.031 1.00 78.06 O
ATOM 6 C5' C B2105 117.291 107.859 43.105 1.00 74.27 C
ATOM 7 C4' C B2105 117.739 109.013 43.978 1.00 72.08 C
ATOM 8 O4' C B2105 118.539 109.935 43.193 1.00 70.56 O
ATOM 9 C3' C B2105 116.659 109.912 44.557 1.00 71.06 C
ATOM 10 O3' C B2105 116.018 109.361 45.697 1.00 71.37 O
ATOM 11 C2' C B2105 117.445 111.168 44.907 1.00 69.26 C
ATOM 12 O2' C B2105 118.174 111.065 46.114 1.00 69.64 O
ATOM 13 C1' C B2105 118.406 111.248 43.721 1.00 66.93 C
ATOM 14 N1 C B2105 117.898 112.138 42.666 1.00 63.39 N
ATOM 15 C2 C B2105 118.003 113.523 42.856 1.00 62.66 C
ATOM 16 O2 C B2105 118.530 113.949 43.900 1.00 62.38 O
ATOM 17 N3 C B2105 117.529 114.359 41.906 1.00 61.35 N
ATOM 18 C4 C B2105 116.973 113.862 40.799 1.00 61.32 C
ATOM 19 N4 C B2105 116.518 114.730 39.888 1.00 60.36 N
ATOM 20 C5 C B2105 116.858 112.457 40.575 1.00 60.77 C
ATOM 21 C6 C B2105 117.329 111.640 41.526 1.00 61.61 C
ATOM 22 P A B2106 114.466 109.681 45.956 1.00 70.97 P
ATOM 23 OP1 A B2106 114.092 109.073 47.259 1.00 71.48 O
ATOM 24 OP2 A B2106 113.717 109.293 44.724 1.00 69.87 O
ATOM 25 O5' A B2106 114.437 111.270 46.105 1.00 68.19 O
TER
Atoms:
C4: (113.749,110.440,37.987)
N3: (114.267,109.166,37.944)
OP1: (111.911,112.546,31.963)
OP2: (111.123,110.905,30.136)
C2: (114.282,108.317,36.870)
C1': (113.828,108.006,34.501)
C3': (112.934,107.273,32.453)
O5': (112.154,110.075,32.227)
O4': (114.458,108.768,33.497)
C5': (113.344,109.633,31.550)
P: (111.293,111.249,31.583)
C4': (113.912,108.409,32.206)
C2': (112.509,107.535,33.898)
O2': (112.061,106.386,34.582)
N1: (113.737,108.832,35.713)
O4: (113.887,111.112,39.012)
O2: (114.737,107.188,36.944)
C6: (113.165,110.085,35.696)
C5: (113.151,110.883,36.764)
O3': (113.657,106.045,32.385)
N3: (114.267,109.166,37.944)
OP1: (111.911,112.546,31.963)
OP2: (111.123,110.905,30.136)
C2: (114.282,108.317,36.870)
C1': (113.828,108.006,34.501)
C3': (112.934,107.273,32.453)
O5': (112.154,110.075,32.227)
O4': (114.458,108.768,33.497)
C5': (113.344,109.633,31.550)
P: (111.293,111.249,31.583)
C4': (113.912,108.409,32.206)
C2': (112.509,107.535,33.898)
O2': (112.061,106.386,34.582)
N1: (113.737,108.832,35.713)
O4: (113.887,111.112,39.012)
O2: (114.737,107.188,36.944)
C6: (113.165,110.085,35.696)
C5: (113.151,110.883,36.764)
O3': (113.657,106.045,32.385)
C2: (118.003,113.523,42.856)
OP1: (117.179,106.298,40.735)
OP2: (114.945,107.467,40.236)
C4: (116.973,113.862,40.799)
O5': (116.448,108.329,42.031)
C3': (116.659,109.912,44.557)
C1': (118.406,111.248,43.721)
O4': (118.539,109.935,43.193)
C5': (117.291,107.859,43.105)
P: (116.376,107.553,40.636)
O2: (118.530,113.949,43.900)
C4': (117.739,109.013,43.978)
C2': (117.445,111.168,44.907)
O2': (118.174,111.065,46.114)
N1: (117.898,112.138,42.666)
N3: (117.529,114.359,41.906)
N4: (116.518,114.730,39.888)
C6: (117.329,111.640,41.526)
C5: (116.858,112.457,40.575)
O3': (116.018,109.361,45.697)
OP1: (117.179,106.298,40.735)
OP2: (114.945,107.467,40.236)
C4: (116.973,113.862,40.799)
O5': (116.448,108.329,42.031)
C3': (116.659,109.912,44.557)
C1': (118.406,111.248,43.721)
O4': (118.539,109.935,43.193)
C5': (117.291,107.859,43.105)
P: (116.376,107.553,40.636)
O2: (118.530,113.949,43.900)
C4': (117.739,109.013,43.978)
C2': (117.445,111.168,44.907)
O2': (118.174,111.065,46.114)
N1: (117.898,112.138,42.666)
N3: (117.529,114.359,41.906)
N4: (116.518,114.730,39.888)
C6: (117.329,111.640,41.526)
C5: (116.858,112.457,40.575)
O3': (116.018,109.361,45.697)
Image (generated by PyMOL):