Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0253:0235
Extra
PDB:
ATOM 1 O3' G A 252 91.766 119.775 3.574 1.00 64.15 O
ATOM 2 P U A 253 90.472 119.779 4.515 1.00 61.71 P
ATOM 3 OP1 U A 253 90.883 120.410 5.789 1.00 62.79 O
ATOM 4 OP2 U A 253 89.887 118.419 4.526 1.00 63.01 O
ATOM 5 O5' U A 253 89.454 120.739 3.767 1.00 62.00 O
ATOM 6 C5' U A 253 89.254 122.093 4.197 1.00 62.50 C
ATOM 7 C4' U A 253 88.824 122.931 3.026 1.00 62.53 C
ATOM 8 O4' U A 253 89.948 123.112 2.128 1.00 62.54 O
ATOM 9 C3' U A 253 87.766 122.263 2.171 1.00 62.29 C
ATOM 10 O3' U A 253 86.468 122.461 2.704 1.00 64.24 O
ATOM 11 C2' U A 253 87.974 122.926 0.820 1.00 61.53 C
ATOM 12 O2' U A 253 87.396 124.214 0.767 1.00 61.87 O
ATOM 13 C1' U A 253 89.502 123.041 0.783 1.00 61.02 C
ATOM 14 N1 U A 253 90.172 121.898 0.138 1.00 59.91 N
ATOM 15 C2 U A 253 90.009 121.735 -1.231 1.00 59.51 C
ATOM 16 O2 U A 253 89.349 122.497 -1.923 1.00 59.46 O
ATOM 17 N3 U A 253 90.651 120.647 -1.761 1.00 58.08 N
ATOM 18 C4 U A 253 91.423 119.729 -1.092 1.00 59.10 C
ATOM 19 O4 U A 253 91.929 118.796 -1.719 1.00 60.75 O
ATOM 20 C5 U A 253 91.552 119.966 0.313 1.00 58.35 C
ATOM 21 C6 U A 253 90.939 121.012 0.866 1.00 58.16 C
ATOM 22 P G A 254 85.430 121.240 2.727 1.00 65.45 P
ATOM 23 OP1 G A 254 84.121 121.773 3.193 1.00 63.07 O
ATOM 24 OP2 G A 254 86.071 120.114 3.452 1.00 63.95 O
ATOM 25 O5' G A 254 85.296 120.817 1.194 1.00 66.66 O
TER
ATOM 1 O3' G B 234 94.670 118.196 -7.522 1.00 77.40 O
ATOM 2 P A B 235 95.318 119.194 -8.607 1.00 76.83 P
ATOM 3 OP1 A B 235 95.107 118.614 -9.961 1.00 77.34 O
ATOM 4 OP2 A B 235 96.704 119.512 -8.154 1.00 76.01 O
ATOM 5 O5' A B 235 94.427 120.509 -8.491 1.00 74.14 O
ATOM 6 C5' A B 235 93.024 120.496 -8.823 1.00 71.01 C
ATOM 7 C4' A B 235 92.320 121.625 -8.108 1.00 71.59 C
ATOM 8 O4' A B 235 92.241 121.328 -6.683 1.00 70.65 O
ATOM 9 C3' A B 235 93.011 122.984 -8.206 1.00 71.76 C
ATOM 10 O3' A B 235 92.029 124.005 -8.113 1.00 73.58 O
ATOM 11 C2' A B 235 93.841 123.013 -6.929 1.00 71.04 C
ATOM 12 O2' A B 235 94.214 124.312 -6.521 1.00 69.48 O
ATOM 13 C1' A B 235 92.857 122.371 -5.954 1.00 70.53 C
ATOM 14 N9 A B 235 93.439 121.815 -4.734 1.00 70.12 N
ATOM 15 C8 A B 235 94.196 120.677 -4.579 1.00 70.78 C
ATOM 16 N7 A B 235 94.557 120.448 -3.340 1.00 70.26 N
ATOM 17 C5 A B 235 94.003 121.506 -2.632 1.00 69.45 C
ATOM 18 C6 A B 235 94.024 121.843 -1.272 1.00 68.83 C
ATOM 19 N6 A B 235 94.655 121.124 -0.342 1.00 67.87 N
ATOM 20 N1 A B 235 93.370 122.962 -0.893 1.00 69.67 N
ATOM 21 C2 A B 235 92.745 123.690 -1.830 1.00 70.34 C
ATOM 22 N3 A B 235 92.658 123.479 -3.139 1.00 69.84 N
ATOM 23 C4 A B 235 93.315 122.356 -3.479 1.00 69.71 C
ATOM 24 P A B 236 91.721 124.940 -9.377 1.00 76.22 P
ATOM 25 OP1 A B 236 92.783 124.705 -10.401 1.00 74.64 O
ATOM 26 OP2 A B 236 91.500 126.312 -8.841 1.00 75.75 O
ATOM 27 O5' A B 236 90.324 124.399 -9.936 1.00 74.84 O
TER
ATOM 2 P U A 253 90.472 119.779 4.515 1.00 61.71 P
ATOM 3 OP1 U A 253 90.883 120.410 5.789 1.00 62.79 O
ATOM 4 OP2 U A 253 89.887 118.419 4.526 1.00 63.01 O
ATOM 5 O5' U A 253 89.454 120.739 3.767 1.00 62.00 O
ATOM 6 C5' U A 253 89.254 122.093 4.197 1.00 62.50 C
ATOM 7 C4' U A 253 88.824 122.931 3.026 1.00 62.53 C
ATOM 8 O4' U A 253 89.948 123.112 2.128 1.00 62.54 O
ATOM 9 C3' U A 253 87.766 122.263 2.171 1.00 62.29 C
ATOM 10 O3' U A 253 86.468 122.461 2.704 1.00 64.24 O
ATOM 11 C2' U A 253 87.974 122.926 0.820 1.00 61.53 C
ATOM 12 O2' U A 253 87.396 124.214 0.767 1.00 61.87 O
ATOM 13 C1' U A 253 89.502 123.041 0.783 1.00 61.02 C
ATOM 14 N1 U A 253 90.172 121.898 0.138 1.00 59.91 N
ATOM 15 C2 U A 253 90.009 121.735 -1.231 1.00 59.51 C
ATOM 16 O2 U A 253 89.349 122.497 -1.923 1.00 59.46 O
ATOM 17 N3 U A 253 90.651 120.647 -1.761 1.00 58.08 N
ATOM 18 C4 U A 253 91.423 119.729 -1.092 1.00 59.10 C
ATOM 19 O4 U A 253 91.929 118.796 -1.719 1.00 60.75 O
ATOM 20 C5 U A 253 91.552 119.966 0.313 1.00 58.35 C
ATOM 21 C6 U A 253 90.939 121.012 0.866 1.00 58.16 C
ATOM 22 P G A 254 85.430 121.240 2.727 1.00 65.45 P
ATOM 23 OP1 G A 254 84.121 121.773 3.193 1.00 63.07 O
ATOM 24 OP2 G A 254 86.071 120.114 3.452 1.00 63.95 O
ATOM 25 O5' G A 254 85.296 120.817 1.194 1.00 66.66 O
TER
ATOM 1 O3' G B 234 94.670 118.196 -7.522 1.00 77.40 O
ATOM 2 P A B 235 95.318 119.194 -8.607 1.00 76.83 P
ATOM 3 OP1 A B 235 95.107 118.614 -9.961 1.00 77.34 O
ATOM 4 OP2 A B 235 96.704 119.512 -8.154 1.00 76.01 O
ATOM 5 O5' A B 235 94.427 120.509 -8.491 1.00 74.14 O
ATOM 6 C5' A B 235 93.024 120.496 -8.823 1.00 71.01 C
ATOM 7 C4' A B 235 92.320 121.625 -8.108 1.00 71.59 C
ATOM 8 O4' A B 235 92.241 121.328 -6.683 1.00 70.65 O
ATOM 9 C3' A B 235 93.011 122.984 -8.206 1.00 71.76 C
ATOM 10 O3' A B 235 92.029 124.005 -8.113 1.00 73.58 O
ATOM 11 C2' A B 235 93.841 123.013 -6.929 1.00 71.04 C
ATOM 12 O2' A B 235 94.214 124.312 -6.521 1.00 69.48 O
ATOM 13 C1' A B 235 92.857 122.371 -5.954 1.00 70.53 C
ATOM 14 N9 A B 235 93.439 121.815 -4.734 1.00 70.12 N
ATOM 15 C8 A B 235 94.196 120.677 -4.579 1.00 70.78 C
ATOM 16 N7 A B 235 94.557 120.448 -3.340 1.00 70.26 N
ATOM 17 C5 A B 235 94.003 121.506 -2.632 1.00 69.45 C
ATOM 18 C6 A B 235 94.024 121.843 -1.272 1.00 68.83 C
ATOM 19 N6 A B 235 94.655 121.124 -0.342 1.00 67.87 N
ATOM 20 N1 A B 235 93.370 122.962 -0.893 1.00 69.67 N
ATOM 21 C2 A B 235 92.745 123.690 -1.830 1.00 70.34 C
ATOM 22 N3 A B 235 92.658 123.479 -3.139 1.00 69.84 N
ATOM 23 C4 A B 235 93.315 122.356 -3.479 1.00 69.71 C
ATOM 24 P A B 236 91.721 124.940 -9.377 1.00 76.22 P
ATOM 25 OP1 A B 236 92.783 124.705 -10.401 1.00 74.64 O
ATOM 26 OP2 A B 236 91.500 126.312 -8.841 1.00 75.75 O
ATOM 27 O5' A B 236 90.324 124.399 -9.936 1.00 74.84 O
TER
Atoms:
C4: (91.423,119.729,-1.092)
N3: (90.651,120.647,-1.761)
OP1: (90.883,120.410,5.789)
OP2: (89.887,118.419,4.526)
C2: (90.009,121.735,-1.231)
C1': (89.502,123.041,0.783)
C3': (87.766,122.263,2.171)
O5': (89.454,120.739,3.767)
O4': (89.948,123.112,2.128)
C5': (89.254,122.093,4.197)
P: (90.472,119.779,4.515)
C4': (88.824,122.931,3.026)
C2': (87.974,122.926,0.820)
O2': (87.396,124.214,0.767)
N1: (90.172,121.898,0.138)
O4: (91.929,118.796,-1.719)
O2: (89.349,122.497,-1.923)
C6: (90.939,121.012,0.866)
C5: (91.552,119.966,0.313)
O3': (86.468,122.461,2.704)
N3: (90.651,120.647,-1.761)
OP1: (90.883,120.410,5.789)
OP2: (89.887,118.419,4.526)
C2: (90.009,121.735,-1.231)
C1': (89.502,123.041,0.783)
C3': (87.766,122.263,2.171)
O5': (89.454,120.739,3.767)
O4': (89.948,123.112,2.128)
C5': (89.254,122.093,4.197)
P: (90.472,119.779,4.515)
C4': (88.824,122.931,3.026)
C2': (87.974,122.926,0.820)
O2': (87.396,124.214,0.767)
N1: (90.172,121.898,0.138)
O4: (91.929,118.796,-1.719)
O2: (89.349,122.497,-1.923)
C6: (90.939,121.012,0.866)
C5: (91.552,119.966,0.313)
O3': (86.468,122.461,2.704)
OP1: (95.107,118.614,-9.961)
OP2: (96.704,119.512,-8.154)
C3': (93.011,122.984,-8.206)
C1': (92.857,122.371,-5.954)
C5': (93.024,120.496,-8.823)
O4': (92.241,121.328,-6.683)
C8: (94.196,120.677,-4.579)
O2': (94.214,124.312,-6.521)
C6: (94.024,121.843,-1.272)
C5: (94.003,121.506,-2.632)
C4: (93.315,122.356,-3.479)
P: (95.318,119.194,-8.607)
C4': (92.320,121.625,-8.108)
C2': (93.841,123.013,-6.929)
C2: (92.745,123.690,-1.830)
N1: (93.370,122.962,-0.893)
N3: (92.658,123.479,-3.139)
N6: (94.655,121.124,-0.342)
N7: (94.557,120.448,-3.340)
N9: (93.439,121.815,-4.734)
O5': (94.427,120.509,-8.491)
O3': (92.029,124.005,-8.113)
OP2: (96.704,119.512,-8.154)
C3': (93.011,122.984,-8.206)
C1': (92.857,122.371,-5.954)
C5': (93.024,120.496,-8.823)
O4': (92.241,121.328,-6.683)
C8: (94.196,120.677,-4.579)
O2': (94.214,124.312,-6.521)
C6: (94.024,121.843,-1.272)
C5: (94.003,121.506,-2.632)
C4: (93.315,122.356,-3.479)
P: (95.318,119.194,-8.607)
C4': (92.320,121.625,-8.108)
C2': (93.841,123.013,-6.929)
C2: (92.745,123.690,-1.830)
N1: (93.370,122.962,-0.893)
N3: (92.658,123.479,-3.139)
N6: (94.655,121.124,-0.342)
N7: (94.557,120.448,-3.340)
N9: (93.439,121.815,-4.734)
O5': (94.427,120.509,-8.491)
O3': (92.029,124.005,-8.113)
Image (generated by PyMOL):