Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12857:12881
Extra
PDB:
ATOM 1 O3' U A2856 27.026 27.088 12.878 1.00 50.57 O
ATOM 2 P U A2857 25.899 26.098 12.320 1.00 49.24 P
ATOM 3 OP1 U A2857 26.583 24.868 11.859 1.00 49.06 O
ATOM 4 OP2 U A2857 25.083 26.863 11.362 1.00 49.84 O
ATOM 5 O5' U A2857 25.062 25.773 13.616 1.00 48.85 O
ATOM 6 C5' U A2857 25.648 25.033 14.669 1.00 48.29 C
ATOM 7 C4' U A2857 24.612 24.535 15.616 1.00 48.02 C
ATOM 8 O4' U A2857 24.035 25.635 16.354 1.00 48.08 O
ATOM 9 C3' U A2857 23.408 23.880 14.988 1.00 48.25 C
ATOM 10 O3' U A2857 23.680 22.579 14.531 1.00 48.12 O
ATOM 11 C2' U A2857 22.407 23.920 16.126 1.00 48.04 C
ATOM 12 O2' U A2857 22.672 22.876 17.037 1.00 47.51 O
ATOM 13 C1' U A2857 22.757 25.253 16.801 1.00 48.04 C
ATOM 14 N1 U A2857 21.821 26.309 16.463 1.00 48.50 N
ATOM 15 C2 U A2857 20.647 26.317 17.167 1.00 48.45 C
ATOM 16 O2 U A2857 20.418 25.474 18.011 1.00 48.05 O
ATOM 17 N3 U A2857 19.811 27.340 16.848 1.00 48.90 N
ATOM 18 C4 U A2857 20.052 28.290 15.892 1.00 49.37 C
ATOM 19 O4 U A2857 19.201 29.144 15.697 1.00 49.76 O
ATOM 20 C5 U A2857 21.272 28.219 15.178 1.00 49.40 C
ATOM 21 C6 U A2857 22.128 27.243 15.500 1.00 48.96 C
ATOM 22 P A A2858 22.907 22.011 13.256 1.00 49.24 P
ATOM 23 OP1 A A2858 23.357 20.627 13.041 1.00 49.01 O
ATOM 24 OP2 A A2858 23.075 22.997 12.158 1.00 49.77 O
ATOM 25 O5' A A2858 21.402 22.012 13.746 1.00 49.29 O
TER
ATOM 1 O3' G B2880 17.604 33.577 14.604 1.00 58.51 O
ATOM 2 P A B2881 17.973 34.814 15.529 1.00 55.14 P
ATOM 3 OP1 A B2881 16.936 35.858 15.327 1.00 55.66 O
ATOM 4 OP2 A B2881 19.390 35.143 15.226 1.00 55.09 O
ATOM 5 O5' A B2881 17.858 34.178 16.985 1.00 54.53 O
ATOM 6 C5' A B2881 16.707 33.438 17.313 1.00 54.43 C
ATOM 7 C4' A B2881 16.923 32.497 18.462 1.00 53.80 C
ATOM 8 O4' A B2881 17.606 31.311 18.037 1.00 53.52 O
ATOM 9 C3' A B2881 17.755 32.982 19.621 1.00 53.44 C
ATOM 10 O3' A B2881 17.071 33.921 20.419 1.00 53.56 O
ATOM 11 C2' A B2881 18.035 31.678 20.345 1.00 52.86 C
ATOM 12 O2' A B2881 16.929 31.310 21.132 1.00 52.72 O
ATOM 13 C1' A B2881 18.140 30.690 19.183 1.00 52.94 C
ATOM 14 N9 A B2881 19.522 30.308 18.910 1.00 52.72 N
ATOM 15 C8 A B2881 20.414 30.861 18.051 1.00 52.97 C
ATOM 16 N7 A B2881 21.538 30.248 18.073 1.00 52.65 N
ATOM 17 C5 A B2881 21.354 29.237 18.995 1.00 52.17 C
ATOM 18 C6 A B2881 22.199 28.235 19.471 1.00 51.68 C
ATOM 19 N6 A B2881 23.438 28.054 19.037 1.00 51.59 N
ATOM 20 N1 A B2881 21.695 27.404 20.391 1.00 51.30 N
ATOM 21 C2 A B2881 20.422 27.564 20.798 1.00 51.40 C
ATOM 22 N3 A B2881 19.539 28.482 20.440 1.00 51.84 N
ATOM 23 C4 A B2881 20.105 29.275 19.523 1.00 52.20 C
ATOM 24 P A B2882 17.855 35.133 21.109 1.00 52.73 P
ATOM 25 OP1 A B2882 17.168 36.387 20.725 1.00 53.29 O
ATOM 26 OP2 A B2882 19.274 34.970 20.780 1.00 52.55 O
ATOM 27 O5' A B2882 17.632 34.845 22.623 1.00 52.26 O
TER
ATOM 2 P U A2857 25.899 26.098 12.320 1.00 49.24 P
ATOM 3 OP1 U A2857 26.583 24.868 11.859 1.00 49.06 O
ATOM 4 OP2 U A2857 25.083 26.863 11.362 1.00 49.84 O
ATOM 5 O5' U A2857 25.062 25.773 13.616 1.00 48.85 O
ATOM 6 C5' U A2857 25.648 25.033 14.669 1.00 48.29 C
ATOM 7 C4' U A2857 24.612 24.535 15.616 1.00 48.02 C
ATOM 8 O4' U A2857 24.035 25.635 16.354 1.00 48.08 O
ATOM 9 C3' U A2857 23.408 23.880 14.988 1.00 48.25 C
ATOM 10 O3' U A2857 23.680 22.579 14.531 1.00 48.12 O
ATOM 11 C2' U A2857 22.407 23.920 16.126 1.00 48.04 C
ATOM 12 O2' U A2857 22.672 22.876 17.037 1.00 47.51 O
ATOM 13 C1' U A2857 22.757 25.253 16.801 1.00 48.04 C
ATOM 14 N1 U A2857 21.821 26.309 16.463 1.00 48.50 N
ATOM 15 C2 U A2857 20.647 26.317 17.167 1.00 48.45 C
ATOM 16 O2 U A2857 20.418 25.474 18.011 1.00 48.05 O
ATOM 17 N3 U A2857 19.811 27.340 16.848 1.00 48.90 N
ATOM 18 C4 U A2857 20.052 28.290 15.892 1.00 49.37 C
ATOM 19 O4 U A2857 19.201 29.144 15.697 1.00 49.76 O
ATOM 20 C5 U A2857 21.272 28.219 15.178 1.00 49.40 C
ATOM 21 C6 U A2857 22.128 27.243 15.500 1.00 48.96 C
ATOM 22 P A A2858 22.907 22.011 13.256 1.00 49.24 P
ATOM 23 OP1 A A2858 23.357 20.627 13.041 1.00 49.01 O
ATOM 24 OP2 A A2858 23.075 22.997 12.158 1.00 49.77 O
ATOM 25 O5' A A2858 21.402 22.012 13.746 1.00 49.29 O
TER
ATOM 1 O3' G B2880 17.604 33.577 14.604 1.00 58.51 O
ATOM 2 P A B2881 17.973 34.814 15.529 1.00 55.14 P
ATOM 3 OP1 A B2881 16.936 35.858 15.327 1.00 55.66 O
ATOM 4 OP2 A B2881 19.390 35.143 15.226 1.00 55.09 O
ATOM 5 O5' A B2881 17.858 34.178 16.985 1.00 54.53 O
ATOM 6 C5' A B2881 16.707 33.438 17.313 1.00 54.43 C
ATOM 7 C4' A B2881 16.923 32.497 18.462 1.00 53.80 C
ATOM 8 O4' A B2881 17.606 31.311 18.037 1.00 53.52 O
ATOM 9 C3' A B2881 17.755 32.982 19.621 1.00 53.44 C
ATOM 10 O3' A B2881 17.071 33.921 20.419 1.00 53.56 O
ATOM 11 C2' A B2881 18.035 31.678 20.345 1.00 52.86 C
ATOM 12 O2' A B2881 16.929 31.310 21.132 1.00 52.72 O
ATOM 13 C1' A B2881 18.140 30.690 19.183 1.00 52.94 C
ATOM 14 N9 A B2881 19.522 30.308 18.910 1.00 52.72 N
ATOM 15 C8 A B2881 20.414 30.861 18.051 1.00 52.97 C
ATOM 16 N7 A B2881 21.538 30.248 18.073 1.00 52.65 N
ATOM 17 C5 A B2881 21.354 29.237 18.995 1.00 52.17 C
ATOM 18 C6 A B2881 22.199 28.235 19.471 1.00 51.68 C
ATOM 19 N6 A B2881 23.438 28.054 19.037 1.00 51.59 N
ATOM 20 N1 A B2881 21.695 27.404 20.391 1.00 51.30 N
ATOM 21 C2 A B2881 20.422 27.564 20.798 1.00 51.40 C
ATOM 22 N3 A B2881 19.539 28.482 20.440 1.00 51.84 N
ATOM 23 C4 A B2881 20.105 29.275 19.523 1.00 52.20 C
ATOM 24 P A B2882 17.855 35.133 21.109 1.00 52.73 P
ATOM 25 OP1 A B2882 17.168 36.387 20.725 1.00 53.29 O
ATOM 26 OP2 A B2882 19.274 34.970 20.780 1.00 52.55 O
ATOM 27 O5' A B2882 17.632 34.845 22.623 1.00 52.26 O
TER
Atoms:
C4: (20.052,28.290,15.892)
N3: (19.811,27.340,16.848)
OP1: (26.583,24.868,11.859)
OP2: (25.083,26.863,11.362)
C2: (20.647,26.317,17.167)
C1': (22.757,25.253,16.801)
C3': (23.408,23.880,14.988)
O5': (25.062,25.773,13.616)
O4': (24.035,25.635,16.354)
C5': (25.648,25.033,14.669)
P: (25.899,26.098,12.320)
C4': (24.612,24.535,15.616)
C2': (22.407,23.920,16.126)
O2': (22.672,22.876,17.037)
N1: (21.821,26.309,16.463)
O4: (19.201,29.144,15.697)
O2: (20.418,25.474,18.011)
C6: (22.128,27.243,15.500)
C5: (21.272,28.219,15.178)
O3': (23.680,22.579,14.531)
N3: (19.811,27.340,16.848)
OP1: (26.583,24.868,11.859)
OP2: (25.083,26.863,11.362)
C2: (20.647,26.317,17.167)
C1': (22.757,25.253,16.801)
C3': (23.408,23.880,14.988)
O5': (25.062,25.773,13.616)
O4': (24.035,25.635,16.354)
C5': (25.648,25.033,14.669)
P: (25.899,26.098,12.320)
C4': (24.612,24.535,15.616)
C2': (22.407,23.920,16.126)
O2': (22.672,22.876,17.037)
N1: (21.821,26.309,16.463)
O4: (19.201,29.144,15.697)
O2: (20.418,25.474,18.011)
C6: (22.128,27.243,15.500)
C5: (21.272,28.219,15.178)
O3': (23.680,22.579,14.531)
OP1: (16.936,35.858,15.327)
OP2: (19.390,35.143,15.226)
C3': (17.755,32.982,19.621)
C1': (18.140,30.690,19.183)
C5': (16.707,33.438,17.313)
O4': (17.606,31.311,18.037)
C8: (20.414,30.861,18.051)
O2': (16.929,31.310,21.132)
C6: (22.199,28.235,19.471)
C5: (21.354,29.237,18.995)
C4: (20.105,29.275,19.523)
P: (17.973,34.814,15.529)
C4': (16.923,32.497,18.462)
C2': (18.035,31.678,20.345)
C2: (20.422,27.564,20.798)
N1: (21.695,27.404,20.391)
N3: (19.539,28.482,20.440)
N6: (23.438,28.054,19.037)
N7: (21.538,30.248,18.073)
N9: (19.522,30.308,18.910)
O5': (17.858,34.178,16.985)
O3': (17.071,33.921,20.419)
OP2: (19.390,35.143,15.226)
C3': (17.755,32.982,19.621)
C1': (18.140,30.690,19.183)
C5': (16.707,33.438,17.313)
O4': (17.606,31.311,18.037)
C8: (20.414,30.861,18.051)
O2': (16.929,31.310,21.132)
C6: (22.199,28.235,19.471)
C5: (21.354,29.237,18.995)
C4: (20.105,29.275,19.523)
P: (17.973,34.814,15.529)
C4': (16.923,32.497,18.462)
C2': (18.035,31.678,20.345)
C2: (20.422,27.564,20.798)
N1: (21.695,27.404,20.391)
N3: (19.539,28.482,20.440)
N6: (23.438,28.054,19.037)
N7: (21.538,30.248,18.073)
N9: (19.522,30.308,18.910)
O5': (17.858,34.178,16.985)
O3': (17.071,33.921,20.419)
Image (generated by PyMOL):