Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11239:11132
Extra
PDB:
ATOM 1 O3' A A1238 32.333 -8.526 6.789 1.00 51.59 O
ATOM 2 P G A1239 33.193 -8.461 8.159 1.00 47.25 P
ATOM 3 OP1 G A1239 33.832 -9.770 8.321 1.00 47.16 O
ATOM 4 OP2 G A1239 32.302 -7.963 9.246 1.00 46.92 O
ATOM 5 O5' G A1239 34.279 -7.361 7.787 1.00 47.29 O
ATOM 6 C5' G A1239 34.043 -5.981 8.034 1.00 47.21 C
ATOM 7 C4' G A1239 34.976 -5.092 7.242 1.00 47.43 C
ATOM 8 O4' G A1239 34.476 -4.954 5.873 1.00 47.99 O
ATOM 9 C3' G A1239 35.119 -3.652 7.739 1.00 47.25 C
ATOM 10 O3' G A1239 36.047 -3.512 8.796 1.00 46.79 O
ATOM 11 C2' G A1239 35.530 -2.901 6.488 1.00 47.69 C
ATOM 12 O2' G A1239 36.900 -3.084 6.255 1.00 47.67 O
ATOM 13 C1' G A1239 34.771 -3.652 5.392 1.00 48.16 C
ATOM 14 N9 G A1239 33.508 -2.972 4.996 1.00 48.43 N
ATOM 15 C8 G A1239 32.208 -3.397 5.120 1.00 48.49 C
ATOM 16 N7 G A1239 31.346 -2.563 4.621 1.00 48.79 N
ATOM 17 C5 G A1239 32.089 -1.519 4.135 1.00 48.93 C
ATOM 18 C6 G A1239 31.733 -0.303 3.468 1.00 49.27 C
ATOM 19 O6 G A1239 30.669 0.187 3.115 1.00 49.53 O
ATOM 20 N1 G A1239 32.835 0.457 3.162 1.00 49.31 N
ATOM 21 C2 G A1239 34.127 0.119 3.417 1.00 49.08 C
ATOM 22 N2 G A1239 35.021 1.027 2.989 1.00 49.21 N
ATOM 23 N3 G A1239 34.478 -1.004 4.026 1.00 48.77 N
ATOM 24 C4 G A1239 33.426 -1.765 4.357 1.00 48.71 C
ATOM 25 P C A1240 35.578 -2.932 10.243 1.00 44.04 P
ATOM 26 OP1 C A1240 36.544 -3.428 11.253 1.00 43.60 O
ATOM 27 OP2 C A1240 34.141 -3.257 10.416 1.00 44.08 O
ATOM 28 O5' C A1240 35.747 -1.361 10.081 1.00 44.12 O
TER
ATOM 1 O3' C B1131 37.648 2.466 1.953 1.00 49.59 O
ATOM 2 P U B1132 36.974 3.912 1.941 1.00 44.93 P
ATOM 3 OP1 U B1132 35.541 3.682 1.749 1.00 45.11 O
ATOM 4 OP2 U B1132 37.708 4.729 0.941 1.00 45.33 O
ATOM 5 O5' U B1132 37.236 4.475 3.399 1.00 44.36 O
ATOM 6 C5' U B1132 36.483 3.993 4.479 1.00 43.97 C
ATOM 7 C4' U B1132 36.808 4.716 5.751 1.00 43.51 C
ATOM 8 O4' U B1132 38.173 4.451 6.140 1.00 43.25 O
ATOM 9 C3' U B1132 36.737 6.228 5.722 1.00 43.63 C
ATOM 10 O3' U B1132 35.401 6.743 5.724 1.00 43.78 O
ATOM 11 C2' U B1132 37.554 6.585 6.961 1.00 43.14 C
ATOM 12 O2' U B1132 36.826 6.350 8.165 1.00 42.73 O
ATOM 13 C1' U B1132 38.666 5.546 6.879 1.00 43.01 C
ATOM 14 N1 U B1132 39.866 6.086 6.213 1.00 43.22 N
ATOM 15 C2 U B1132 40.642 6.958 6.953 1.00 42.97 C
ATOM 16 O2 U B1132 40.399 7.321 8.080 1.00 42.60 O
ATOM 17 N3 U B1132 41.741 7.426 6.296 1.00 43.18 N
ATOM 18 C4 U B1132 42.139 7.130 5.019 1.00 43.62 C
ATOM 19 O4 U B1132 43.153 7.679 4.601 1.00 43.77 O
ATOM 20 C5 U B1132 41.312 6.209 4.318 1.00 43.86 C
ATOM 21 C6 U B1132 40.232 5.740 4.930 1.00 43.65 C
ATOM 22 P C B1133 35.057 8.148 4.993 1.00 54.38 P
ATOM 23 OP1 C B1133 33.595 8.204 4.786 1.00 54.59 O
ATOM 24 OP2 C B1133 35.944 8.257 3.816 1.00 54.77 O
ATOM 25 O5' C B1133 35.486 9.203 6.083 1.00 54.03 O
TER
ATOM 2 P G A1239 33.193 -8.461 8.159 1.00 47.25 P
ATOM 3 OP1 G A1239 33.832 -9.770 8.321 1.00 47.16 O
ATOM 4 OP2 G A1239 32.302 -7.963 9.246 1.00 46.92 O
ATOM 5 O5' G A1239 34.279 -7.361 7.787 1.00 47.29 O
ATOM 6 C5' G A1239 34.043 -5.981 8.034 1.00 47.21 C
ATOM 7 C4' G A1239 34.976 -5.092 7.242 1.00 47.43 C
ATOM 8 O4' G A1239 34.476 -4.954 5.873 1.00 47.99 O
ATOM 9 C3' G A1239 35.119 -3.652 7.739 1.00 47.25 C
ATOM 10 O3' G A1239 36.047 -3.512 8.796 1.00 46.79 O
ATOM 11 C2' G A1239 35.530 -2.901 6.488 1.00 47.69 C
ATOM 12 O2' G A1239 36.900 -3.084 6.255 1.00 47.67 O
ATOM 13 C1' G A1239 34.771 -3.652 5.392 1.00 48.16 C
ATOM 14 N9 G A1239 33.508 -2.972 4.996 1.00 48.43 N
ATOM 15 C8 G A1239 32.208 -3.397 5.120 1.00 48.49 C
ATOM 16 N7 G A1239 31.346 -2.563 4.621 1.00 48.79 N
ATOM 17 C5 G A1239 32.089 -1.519 4.135 1.00 48.93 C
ATOM 18 C6 G A1239 31.733 -0.303 3.468 1.00 49.27 C
ATOM 19 O6 G A1239 30.669 0.187 3.115 1.00 49.53 O
ATOM 20 N1 G A1239 32.835 0.457 3.162 1.00 49.31 N
ATOM 21 C2 G A1239 34.127 0.119 3.417 1.00 49.08 C
ATOM 22 N2 G A1239 35.021 1.027 2.989 1.00 49.21 N
ATOM 23 N3 G A1239 34.478 -1.004 4.026 1.00 48.77 N
ATOM 24 C4 G A1239 33.426 -1.765 4.357 1.00 48.71 C
ATOM 25 P C A1240 35.578 -2.932 10.243 1.00 44.04 P
ATOM 26 OP1 C A1240 36.544 -3.428 11.253 1.00 43.60 O
ATOM 27 OP2 C A1240 34.141 -3.257 10.416 1.00 44.08 O
ATOM 28 O5' C A1240 35.747 -1.361 10.081 1.00 44.12 O
TER
ATOM 1 O3' C B1131 37.648 2.466 1.953 1.00 49.59 O
ATOM 2 P U B1132 36.974 3.912 1.941 1.00 44.93 P
ATOM 3 OP1 U B1132 35.541 3.682 1.749 1.00 45.11 O
ATOM 4 OP2 U B1132 37.708 4.729 0.941 1.00 45.33 O
ATOM 5 O5' U B1132 37.236 4.475 3.399 1.00 44.36 O
ATOM 6 C5' U B1132 36.483 3.993 4.479 1.00 43.97 C
ATOM 7 C4' U B1132 36.808 4.716 5.751 1.00 43.51 C
ATOM 8 O4' U B1132 38.173 4.451 6.140 1.00 43.25 O
ATOM 9 C3' U B1132 36.737 6.228 5.722 1.00 43.63 C
ATOM 10 O3' U B1132 35.401 6.743 5.724 1.00 43.78 O
ATOM 11 C2' U B1132 37.554 6.585 6.961 1.00 43.14 C
ATOM 12 O2' U B1132 36.826 6.350 8.165 1.00 42.73 O
ATOM 13 C1' U B1132 38.666 5.546 6.879 1.00 43.01 C
ATOM 14 N1 U B1132 39.866 6.086 6.213 1.00 43.22 N
ATOM 15 C2 U B1132 40.642 6.958 6.953 1.00 42.97 C
ATOM 16 O2 U B1132 40.399 7.321 8.080 1.00 42.60 O
ATOM 17 N3 U B1132 41.741 7.426 6.296 1.00 43.18 N
ATOM 18 C4 U B1132 42.139 7.130 5.019 1.00 43.62 C
ATOM 19 O4 U B1132 43.153 7.679 4.601 1.00 43.77 O
ATOM 20 C5 U B1132 41.312 6.209 4.318 1.00 43.86 C
ATOM 21 C6 U B1132 40.232 5.740 4.930 1.00 43.65 C
ATOM 22 P C B1133 35.057 8.148 4.993 1.00 54.38 P
ATOM 23 OP1 C B1133 33.595 8.204 4.786 1.00 54.59 O
ATOM 24 OP2 C B1133 35.944 8.257 3.816 1.00 54.77 O
ATOM 25 O5' C B1133 35.486 9.203 6.083 1.00 54.03 O
TER
Atoms:
OP1: (33.832,-9.770,8.321)
OP2: (32.302,-7.963,9.246)
C3': (35.119,-3.652,7.739)
C1': (34.771,-3.652,5.392)
C5': (34.043,-5.981,8.034)
O6: (30.669,0.187,3.115)
O4': (34.476,-4.954,5.873)
C8: (32.208,-3.397,5.120)
C2: (34.127,0.119,3.417)
C6: (31.733,-0.303,3.468)
C5: (32.089,-1.519,4.135)
C4: (33.426,-1.765,4.357)
P: (33.193,-8.461,8.159)
C4': (34.976,-5.092,7.242)
C2': (35.530,-2.901,6.488)
O2': (36.900,-3.084,6.255)
N1: (32.835,0.457,3.162)
N2: (35.021,1.027,2.989)
N3: (34.478,-1.004,4.026)
N7: (31.346,-2.563,4.621)
N9: (33.508,-2.972,4.996)
O5': (34.279,-7.361,7.787)
O3': (36.047,-3.512,8.796)
OP2: (32.302,-7.963,9.246)
C3': (35.119,-3.652,7.739)
C1': (34.771,-3.652,5.392)
C5': (34.043,-5.981,8.034)
O6: (30.669,0.187,3.115)
O4': (34.476,-4.954,5.873)
C8: (32.208,-3.397,5.120)
C2: (34.127,0.119,3.417)
C6: (31.733,-0.303,3.468)
C5: (32.089,-1.519,4.135)
C4: (33.426,-1.765,4.357)
P: (33.193,-8.461,8.159)
C4': (34.976,-5.092,7.242)
C2': (35.530,-2.901,6.488)
O2': (36.900,-3.084,6.255)
N1: (32.835,0.457,3.162)
N2: (35.021,1.027,2.989)
N3: (34.478,-1.004,4.026)
N7: (31.346,-2.563,4.621)
N9: (33.508,-2.972,4.996)
O5': (34.279,-7.361,7.787)
O3': (36.047,-3.512,8.796)
C4: (42.139,7.130,5.019)
N3: (41.741,7.426,6.296)
OP1: (35.541,3.682,1.749)
OP2: (37.708,4.729,0.941)
C2: (40.642,6.958,6.953)
C1': (38.666,5.546,6.879)
C3': (36.737,6.228,5.722)
O5': (37.236,4.475,3.399)
O4': (38.173,4.451,6.140)
C5': (36.483,3.993,4.479)
P: (36.974,3.912,1.941)
C4': (36.808,4.716,5.751)
C2': (37.554,6.585,6.961)
O2': (36.826,6.350,8.165)
N1: (39.866,6.086,6.213)
O4: (43.153,7.679,4.601)
O2: (40.399,7.321,8.080)
C6: (40.232,5.740,4.930)
C5: (41.312,6.209,4.318)
O3': (35.401,6.743,5.724)
N3: (41.741,7.426,6.296)
OP1: (35.541,3.682,1.749)
OP2: (37.708,4.729,0.941)
C2: (40.642,6.958,6.953)
C1': (38.666,5.546,6.879)
C3': (36.737,6.228,5.722)
O5': (37.236,4.475,3.399)
O4': (38.173,4.451,6.140)
C5': (36.483,3.993,4.479)
P: (36.974,3.912,1.941)
C4': (36.808,4.716,5.751)
C2': (37.554,6.585,6.961)
O2': (36.826,6.350,8.165)
N1: (39.866,6.086,6.213)
O4: (43.153,7.679,4.601)
O2: (40.399,7.321,8.080)
C6: (40.232,5.740,4.930)
C5: (41.312,6.209,4.318)
O3': (35.401,6.743,5.724)
Image (generated by PyMOL):