Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12623:11380
Extra
PDB:
ATOM 1 O3' C A2622 36.991 -1.123 67.314 1.00 55.34 O
ATOM 2 P G A2623 38.471 -1.542 67.928 1.00 87.03 P
ATOM 3 OP1 G A2623 39.441 -1.584 66.798 1.00 87.00 O
ATOM 4 OP2 G A2623 38.278 -2.782 68.777 1.00 87.00 O
ATOM 5 O5' G A2623 38.816 -0.320 68.879 1.00 87.11 O
ATOM 6 C5' G A2623 39.064 0.974 68.364 1.00 87.17 C
ATOM 7 C4' G A2623 40.196 1.667 69.104 1.00 87.21 C
ATOM 8 O4' G A2623 41.073 0.675 69.676 1.00 87.16 O
ATOM 9 C3' G A2623 41.084 2.589 68.255 1.00 87.25 C
ATOM 10 O3' G A2623 40.684 3.959 68.351 1.00 87.36 O
ATOM 11 C2' G A2623 42.522 2.341 68.749 1.00 87.24 C
ATOM 12 O2' G A2623 42.990 3.416 69.566 1.00 87.34 O
ATOM 13 C1' G A2623 42.408 1.072 69.600 1.00 87.17 C
ATOM 14 N9 G A2623 43.213 -0.056 69.079 1.00 87.09 N
ATOM 15 C8 G A2623 42.958 -1.027 68.111 1.00 87.02 C
ATOM 16 N7 G A2623 43.931 -1.886 67.961 1.00 86.98 N
ATOM 17 C5 G A2623 44.883 -1.437 68.901 1.00 87.03 C
ATOM 18 C6 G A2623 46.181 -1.927 69.247 1.00 87.03 C
ATOM 19 O6 G A2623 46.754 -2.914 68.742 1.00 86.99 O
ATOM 20 N1 G A2623 46.782 -1.166 70.278 1.00 87.11 N
ATOM 21 C2 G A2623 46.215 -0.058 70.887 1.00 87.18 C
ATOM 22 N2 G A2623 46.907 0.588 71.839 1.00 87.27 N
ATOM 23 N3 G A2623 45.031 0.399 70.580 1.00 87.18 N
ATOM 24 C4 G A2623 44.447 -0.326 69.595 1.00 87.10 C
ATOM 25 P A A2624 40.158 4.776 67.069 1.00107.36 P
ATOM 26 OP1 A A2624 40.753 4.150 65.860 1.00107.29 O
ATOM 27 OP2 A A2624 40.427 6.224 67.331 1.00107.49 O
ATOM 28 O5' A A2624 38.590 4.500 67.108 1.00107.37 O
TER
ATOM 1 O3' A B1379 51.933 -1.175 73.064 1.00 33.53 O
ATOM 2 P U B1380 51.019 -0.326 74.046 1.00 38.41 P
ATOM 3 OP1 U B1380 51.329 -0.722 75.405 1.00 38.50 O
ATOM 4 OP2 U B1380 49.659 -0.504 73.575 1.00 38.32 O
ATOM 5 O5' U B1380 51.499 1.153 73.789 1.00 38.50 O
ATOM 6 C5' U B1380 51.211 1.815 72.587 1.00 38.46 C
ATOM 7 C4' U B1380 50.419 3.044 72.854 1.00 38.53 C
ATOM 8 O4' U B1380 49.022 2.721 72.883 1.00 38.46 O
ATOM 9 C3' U B1380 50.665 3.682 74.195 1.00 38.67 C
ATOM 10 O3' U B1380 51.812 4.495 74.160 1.00 38.78 O
ATOM 11 C2' U B1380 49.371 4.455 74.462 1.00 38.70 C
ATOM 12 O2' U B1380 49.406 5.730 73.857 1.00 38.78 O
ATOM 13 C1' U B1380 48.342 3.631 73.715 1.00 38.56 C
ATOM 14 N1 U B1380 47.428 2.907 74.612 1.00 38.54 N
ATOM 15 C2 U B1380 46.377 3.659 75.035 1.00 38.60 C
ATOM 16 O2 U B1380 46.292 4.819 74.700 1.00 38.67 O
ATOM 17 N3 U B1380 45.502 3.047 75.874 1.00 38.59 N
ATOM 18 C4 U B1380 45.572 1.768 76.277 1.00 38.53 C
ATOM 19 O4 U B1380 44.711 1.328 77.004 1.00 38.54 O
ATOM 20 C5 U B1380 46.675 1.044 75.792 1.00 38.47 C
ATOM 21 C6 U B1380 47.551 1.615 74.984 1.00 38.47 C
ATOM 22 P C B1381 52.584 4.891 75.489 1.00 32.56 P
ATOM 23 OP1 C B1381 51.644 5.639 76.311 1.00 32.64 O
ATOM 24 OP2 C B1381 53.866 5.558 75.046 1.00 32.64 O
ATOM 25 O5' C B1381 52.893 3.481 76.176 1.00 32.51 O
TER
ATOM 2 P G A2623 38.471 -1.542 67.928 1.00 87.03 P
ATOM 3 OP1 G A2623 39.441 -1.584 66.798 1.00 87.00 O
ATOM 4 OP2 G A2623 38.278 -2.782 68.777 1.00 87.00 O
ATOM 5 O5' G A2623 38.816 -0.320 68.879 1.00 87.11 O
ATOM 6 C5' G A2623 39.064 0.974 68.364 1.00 87.17 C
ATOM 7 C4' G A2623 40.196 1.667 69.104 1.00 87.21 C
ATOM 8 O4' G A2623 41.073 0.675 69.676 1.00 87.16 O
ATOM 9 C3' G A2623 41.084 2.589 68.255 1.00 87.25 C
ATOM 10 O3' G A2623 40.684 3.959 68.351 1.00 87.36 O
ATOM 11 C2' G A2623 42.522 2.341 68.749 1.00 87.24 C
ATOM 12 O2' G A2623 42.990 3.416 69.566 1.00 87.34 O
ATOM 13 C1' G A2623 42.408 1.072 69.600 1.00 87.17 C
ATOM 14 N9 G A2623 43.213 -0.056 69.079 1.00 87.09 N
ATOM 15 C8 G A2623 42.958 -1.027 68.111 1.00 87.02 C
ATOM 16 N7 G A2623 43.931 -1.886 67.961 1.00 86.98 N
ATOM 17 C5 G A2623 44.883 -1.437 68.901 1.00 87.03 C
ATOM 18 C6 G A2623 46.181 -1.927 69.247 1.00 87.03 C
ATOM 19 O6 G A2623 46.754 -2.914 68.742 1.00 86.99 O
ATOM 20 N1 G A2623 46.782 -1.166 70.278 1.00 87.11 N
ATOM 21 C2 G A2623 46.215 -0.058 70.887 1.00 87.18 C
ATOM 22 N2 G A2623 46.907 0.588 71.839 1.00 87.27 N
ATOM 23 N3 G A2623 45.031 0.399 70.580 1.00 87.18 N
ATOM 24 C4 G A2623 44.447 -0.326 69.595 1.00 87.10 C
ATOM 25 P A A2624 40.158 4.776 67.069 1.00107.36 P
ATOM 26 OP1 A A2624 40.753 4.150 65.860 1.00107.29 O
ATOM 27 OP2 A A2624 40.427 6.224 67.331 1.00107.49 O
ATOM 28 O5' A A2624 38.590 4.500 67.108 1.00107.37 O
TER
ATOM 1 O3' A B1379 51.933 -1.175 73.064 1.00 33.53 O
ATOM 2 P U B1380 51.019 -0.326 74.046 1.00 38.41 P
ATOM 3 OP1 U B1380 51.329 -0.722 75.405 1.00 38.50 O
ATOM 4 OP2 U B1380 49.659 -0.504 73.575 1.00 38.32 O
ATOM 5 O5' U B1380 51.499 1.153 73.789 1.00 38.50 O
ATOM 6 C5' U B1380 51.211 1.815 72.587 1.00 38.46 C
ATOM 7 C4' U B1380 50.419 3.044 72.854 1.00 38.53 C
ATOM 8 O4' U B1380 49.022 2.721 72.883 1.00 38.46 O
ATOM 9 C3' U B1380 50.665 3.682 74.195 1.00 38.67 C
ATOM 10 O3' U B1380 51.812 4.495 74.160 1.00 38.78 O
ATOM 11 C2' U B1380 49.371 4.455 74.462 1.00 38.70 C
ATOM 12 O2' U B1380 49.406 5.730 73.857 1.00 38.78 O
ATOM 13 C1' U B1380 48.342 3.631 73.715 1.00 38.56 C
ATOM 14 N1 U B1380 47.428 2.907 74.612 1.00 38.54 N
ATOM 15 C2 U B1380 46.377 3.659 75.035 1.00 38.60 C
ATOM 16 O2 U B1380 46.292 4.819 74.700 1.00 38.67 O
ATOM 17 N3 U B1380 45.502 3.047 75.874 1.00 38.59 N
ATOM 18 C4 U B1380 45.572 1.768 76.277 1.00 38.53 C
ATOM 19 O4 U B1380 44.711 1.328 77.004 1.00 38.54 O
ATOM 20 C5 U B1380 46.675 1.044 75.792 1.00 38.47 C
ATOM 21 C6 U B1380 47.551 1.615 74.984 1.00 38.47 C
ATOM 22 P C B1381 52.584 4.891 75.489 1.00 32.56 P
ATOM 23 OP1 C B1381 51.644 5.639 76.311 1.00 32.64 O
ATOM 24 OP2 C B1381 53.866 5.558 75.046 1.00 32.64 O
ATOM 25 O5' C B1381 52.893 3.481 76.176 1.00 32.51 O
TER
Atoms:
OP1: (39.441,-1.584,66.798)
OP2: (38.278,-2.782,68.777)
C3': (41.084,2.589,68.255)
C1': (42.408,1.072,69.600)
C5': (39.064,0.974,68.364)
O6: (46.754,-2.914,68.742)
O4': (41.073,0.675,69.676)
C8: (42.958,-1.027,68.111)
C2: (46.215,-0.058,70.887)
C6: (46.181,-1.927,69.247)
C5: (44.883,-1.437,68.901)
C4: (44.447,-0.326,69.595)
P: (38.471,-1.542,67.928)
C4': (40.196,1.667,69.104)
C2': (42.522,2.341,68.749)
O2': (42.990,3.416,69.566)
N1: (46.782,-1.166,70.278)
N2: (46.907,0.588,71.839)
N3: (45.031,0.399,70.580)
N7: (43.931,-1.886,67.961)
N9: (43.213,-0.056,69.079)
O5': (38.816,-0.320,68.879)
O3': (40.684,3.959,68.351)
OP2: (38.278,-2.782,68.777)
C3': (41.084,2.589,68.255)
C1': (42.408,1.072,69.600)
C5': (39.064,0.974,68.364)
O6: (46.754,-2.914,68.742)
O4': (41.073,0.675,69.676)
C8: (42.958,-1.027,68.111)
C2: (46.215,-0.058,70.887)
C6: (46.181,-1.927,69.247)
C5: (44.883,-1.437,68.901)
C4: (44.447,-0.326,69.595)
P: (38.471,-1.542,67.928)
C4': (40.196,1.667,69.104)
C2': (42.522,2.341,68.749)
O2': (42.990,3.416,69.566)
N1: (46.782,-1.166,70.278)
N2: (46.907,0.588,71.839)
N3: (45.031,0.399,70.580)
N7: (43.931,-1.886,67.961)
N9: (43.213,-0.056,69.079)
O5': (38.816,-0.320,68.879)
O3': (40.684,3.959,68.351)
C4: (45.572,1.768,76.277)
N3: (45.502,3.047,75.874)
OP1: (51.329,-0.722,75.405)
OP2: (49.659,-0.504,73.575)
C2: (46.377,3.659,75.035)
C1': (48.342,3.631,73.715)
C3': (50.665,3.682,74.195)
O5': (51.499,1.153,73.789)
O4': (49.022,2.721,72.883)
C5': (51.211,1.815,72.587)
P: (51.019,-0.326,74.046)
C4': (50.419,3.044,72.854)
C2': (49.371,4.455,74.462)
O2': (49.406,5.730,73.857)
N1: (47.428,2.907,74.612)
O4: (44.711,1.328,77.004)
O2: (46.292,4.819,74.700)
C6: (47.551,1.615,74.984)
C5: (46.675,1.044,75.792)
O3': (51.812,4.495,74.160)
N3: (45.502,3.047,75.874)
OP1: (51.329,-0.722,75.405)
OP2: (49.659,-0.504,73.575)
C2: (46.377,3.659,75.035)
C1': (48.342,3.631,73.715)
C3': (50.665,3.682,74.195)
O5': (51.499,1.153,73.789)
O4': (49.022,2.721,72.883)
C5': (51.211,1.815,72.587)
P: (51.019,-0.326,74.046)
C4': (50.419,3.044,72.854)
C2': (49.371,4.455,74.462)
O2': (49.406,5.730,73.857)
N1: (47.428,2.907,74.612)
O4: (44.711,1.328,77.004)
O2: (46.292,4.819,74.700)
C6: (47.551,1.615,74.984)
C5: (46.675,1.044,75.792)
O3': (51.812,4.495,74.160)
Image (generated by PyMOL):