Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0253:0235
Extra
PDB:
ATOM 1 O3' G A 252 91.541 119.773 3.379 1.00 52.84 O
ATOM 2 P U A 253 90.213 119.487 4.231 1.00 52.80 P
ATOM 3 OP1 U A 253 90.479 119.926 5.621 1.00 52.92 O
ATOM 4 OP2 U A 253 89.779 118.093 3.979 1.00 53.66 O
ATOM 5 O5' U A 253 89.135 120.454 3.576 1.00 53.27 O
ATOM 6 C5' U A 253 88.982 121.818 4.017 1.00 53.01 C
ATOM 7 C4' U A 253 88.521 122.675 2.869 1.00 52.04 C
ATOM 8 O4' U A 253 89.621 122.852 1.940 1.00 52.09 O
ATOM 9 C3' U A 253 87.420 122.046 2.039 1.00 51.84 C
ATOM 10 O3' U A 253 86.136 122.265 2.601 1.00 53.52 O
ATOM 11 C2' U A 253 87.609 122.706 0.683 1.00 51.22 C
ATOM 12 O2' U A 253 87.042 123.999 0.633 1.00 49.82 O
ATOM 13 C1' U A 253 89.138 122.797 0.608 1.00 51.35 C
ATOM 14 N1 U A 253 89.791 121.658 -0.063 1.00 50.85 N
ATOM 15 C2 U A 253 89.623 121.516 -1.436 1.00 50.47 C
ATOM 16 O2 U A 253 88.973 122.293 -2.117 1.00 49.53 O
ATOM 17 N3 U A 253 90.251 120.427 -1.981 1.00 50.80 N
ATOM 18 C4 U A 253 91.016 119.488 -1.323 1.00 51.87 C
ATOM 19 O4 U A 253 91.489 118.542 -1.956 1.00 52.54 O
ATOM 20 C5 U A 253 91.152 119.710 0.084 1.00 51.07 C
ATOM 21 C6 U A 253 90.551 120.756 0.651 1.00 49.72 C
ATOM 22 P G A 254 85.049 121.081 2.573 1.00 55.86 P
ATOM 23 OP1 G A 254 83.736 121.669 2.950 1.00 54.15 O
ATOM 24 OP2 G A 254 85.589 119.931 3.341 1.00 53.97 O
ATOM 25 O5' G A 254 84.976 120.657 1.038 1.00 55.79 O
TER
ATOM 1 O3' G B 234 94.228 118.064 -7.786 1.00 66.23 O
ATOM 2 P A B 235 94.725 119.056 -8.947 1.00 65.33 P
ATOM 3 OP1 A B 235 94.225 118.524 -10.242 1.00 65.43 O
ATOM 4 OP2 A B 235 96.187 119.272 -8.757 1.00 63.53 O
ATOM 5 O5' A B 235 93.930 120.402 -8.651 1.00 64.19 O
ATOM 6 C5' A B 235 92.533 120.520 -8.988 1.00 63.56 C
ATOM 7 C4' A B 235 91.924 121.694 -8.266 1.00 63.92 C
ATOM 8 O4' A B 235 91.811 121.393 -6.848 1.00 63.93 O
ATOM 9 C3' A B 235 92.720 122.991 -8.353 1.00 63.52 C
ATOM 10 O3' A B 235 91.816 124.078 -8.263 1.00 63.91 O
ATOM 11 C2' A B 235 93.551 122.949 -7.080 1.00 64.05 C
ATOM 12 O2' A B 235 93.994 124.225 -6.659 1.00 62.53 O
ATOM 13 C1' A B 235 92.537 122.352 -6.105 1.00 64.72 C
ATOM 14 N9 A B 235 93.114 121.688 -4.939 1.00 66.33 N
ATOM 15 C8 A B 235 93.877 120.545 -4.887 1.00 66.96 C
ATOM 16 N7 A B 235 94.224 120.198 -3.673 1.00 67.32 N
ATOM 17 C5 A B 235 93.655 121.179 -2.872 1.00 66.60 C
ATOM 18 C6 A B 235 93.654 121.380 -1.489 1.00 66.08 C
ATOM 19 N6 A B 235 94.254 120.567 -0.621 1.00 65.94 N
ATOM 20 N1 A B 235 93.001 122.459 -1.015 1.00 66.80 N
ATOM 21 C2 A B 235 92.391 123.273 -1.881 1.00 66.71 C
ATOM 22 N3 A B 235 92.314 123.186 -3.199 1.00 66.51 N
ATOM 23 C4 A B 235 92.976 122.104 -3.639 1.00 66.42 C
ATOM 24 P A B 236 91.326 124.808 -9.595 1.00 64.10 P
ATOM 25 OP1 A B 236 92.402 124.584 -10.598 1.00 64.06 O
ATOM 26 OP2 A B 236 90.915 126.196 -9.238 1.00 63.39 O
ATOM 27 O5' A B 236 90.028 123.997 -10.038 1.00 63.06 O
TER
ATOM 2 P U A 253 90.213 119.487 4.231 1.00 52.80 P
ATOM 3 OP1 U A 253 90.479 119.926 5.621 1.00 52.92 O
ATOM 4 OP2 U A 253 89.779 118.093 3.979 1.00 53.66 O
ATOM 5 O5' U A 253 89.135 120.454 3.576 1.00 53.27 O
ATOM 6 C5' U A 253 88.982 121.818 4.017 1.00 53.01 C
ATOM 7 C4' U A 253 88.521 122.675 2.869 1.00 52.04 C
ATOM 8 O4' U A 253 89.621 122.852 1.940 1.00 52.09 O
ATOM 9 C3' U A 253 87.420 122.046 2.039 1.00 51.84 C
ATOM 10 O3' U A 253 86.136 122.265 2.601 1.00 53.52 O
ATOM 11 C2' U A 253 87.609 122.706 0.683 1.00 51.22 C
ATOM 12 O2' U A 253 87.042 123.999 0.633 1.00 49.82 O
ATOM 13 C1' U A 253 89.138 122.797 0.608 1.00 51.35 C
ATOM 14 N1 U A 253 89.791 121.658 -0.063 1.00 50.85 N
ATOM 15 C2 U A 253 89.623 121.516 -1.436 1.00 50.47 C
ATOM 16 O2 U A 253 88.973 122.293 -2.117 1.00 49.53 O
ATOM 17 N3 U A 253 90.251 120.427 -1.981 1.00 50.80 N
ATOM 18 C4 U A 253 91.016 119.488 -1.323 1.00 51.87 C
ATOM 19 O4 U A 253 91.489 118.542 -1.956 1.00 52.54 O
ATOM 20 C5 U A 253 91.152 119.710 0.084 1.00 51.07 C
ATOM 21 C6 U A 253 90.551 120.756 0.651 1.00 49.72 C
ATOM 22 P G A 254 85.049 121.081 2.573 1.00 55.86 P
ATOM 23 OP1 G A 254 83.736 121.669 2.950 1.00 54.15 O
ATOM 24 OP2 G A 254 85.589 119.931 3.341 1.00 53.97 O
ATOM 25 O5' G A 254 84.976 120.657 1.038 1.00 55.79 O
TER
ATOM 1 O3' G B 234 94.228 118.064 -7.786 1.00 66.23 O
ATOM 2 P A B 235 94.725 119.056 -8.947 1.00 65.33 P
ATOM 3 OP1 A B 235 94.225 118.524 -10.242 1.00 65.43 O
ATOM 4 OP2 A B 235 96.187 119.272 -8.757 1.00 63.53 O
ATOM 5 O5' A B 235 93.930 120.402 -8.651 1.00 64.19 O
ATOM 6 C5' A B 235 92.533 120.520 -8.988 1.00 63.56 C
ATOM 7 C4' A B 235 91.924 121.694 -8.266 1.00 63.92 C
ATOM 8 O4' A B 235 91.811 121.393 -6.848 1.00 63.93 O
ATOM 9 C3' A B 235 92.720 122.991 -8.353 1.00 63.52 C
ATOM 10 O3' A B 235 91.816 124.078 -8.263 1.00 63.91 O
ATOM 11 C2' A B 235 93.551 122.949 -7.080 1.00 64.05 C
ATOM 12 O2' A B 235 93.994 124.225 -6.659 1.00 62.53 O
ATOM 13 C1' A B 235 92.537 122.352 -6.105 1.00 64.72 C
ATOM 14 N9 A B 235 93.114 121.688 -4.939 1.00 66.33 N
ATOM 15 C8 A B 235 93.877 120.545 -4.887 1.00 66.96 C
ATOM 16 N7 A B 235 94.224 120.198 -3.673 1.00 67.32 N
ATOM 17 C5 A B 235 93.655 121.179 -2.872 1.00 66.60 C
ATOM 18 C6 A B 235 93.654 121.380 -1.489 1.00 66.08 C
ATOM 19 N6 A B 235 94.254 120.567 -0.621 1.00 65.94 N
ATOM 20 N1 A B 235 93.001 122.459 -1.015 1.00 66.80 N
ATOM 21 C2 A B 235 92.391 123.273 -1.881 1.00 66.71 C
ATOM 22 N3 A B 235 92.314 123.186 -3.199 1.00 66.51 N
ATOM 23 C4 A B 235 92.976 122.104 -3.639 1.00 66.42 C
ATOM 24 P A B 236 91.326 124.808 -9.595 1.00 64.10 P
ATOM 25 OP1 A B 236 92.402 124.584 -10.598 1.00 64.06 O
ATOM 26 OP2 A B 236 90.915 126.196 -9.238 1.00 63.39 O
ATOM 27 O5' A B 236 90.028 123.997 -10.038 1.00 63.06 O
TER
Atoms:
C4: (91.016,119.488,-1.323)
N3: (90.251,120.427,-1.981)
OP1: (90.479,119.926,5.621)
OP2: (89.779,118.093,3.979)
C2: (89.623,121.516,-1.436)
C1': (89.138,122.797,0.608)
C3': (87.420,122.046,2.039)
O5': (89.135,120.454,3.576)
O4': (89.621,122.852,1.940)
C5': (88.982,121.818,4.017)
P: (90.213,119.487,4.231)
C4': (88.521,122.675,2.869)
C2': (87.609,122.706,0.683)
O2': (87.042,123.999,0.633)
N1: (89.791,121.658,-0.063)
O4: (91.489,118.542,-1.956)
O2: (88.973,122.293,-2.117)
C6: (90.551,120.756,0.651)
C5: (91.152,119.710,0.084)
O3': (86.136,122.265,2.601)
N3: (90.251,120.427,-1.981)
OP1: (90.479,119.926,5.621)
OP2: (89.779,118.093,3.979)
C2: (89.623,121.516,-1.436)
C1': (89.138,122.797,0.608)
C3': (87.420,122.046,2.039)
O5': (89.135,120.454,3.576)
O4': (89.621,122.852,1.940)
C5': (88.982,121.818,4.017)
P: (90.213,119.487,4.231)
C4': (88.521,122.675,2.869)
C2': (87.609,122.706,0.683)
O2': (87.042,123.999,0.633)
N1: (89.791,121.658,-0.063)
O4: (91.489,118.542,-1.956)
O2: (88.973,122.293,-2.117)
C6: (90.551,120.756,0.651)
C5: (91.152,119.710,0.084)
O3': (86.136,122.265,2.601)
OP1: (94.225,118.524,-10.242)
OP2: (96.187,119.272,-8.757)
C3': (92.720,122.991,-8.353)
C1': (92.537,122.352,-6.105)
C5': (92.533,120.520,-8.988)
O4': (91.811,121.393,-6.848)
C8: (93.877,120.545,-4.887)
O2': (93.994,124.225,-6.659)
C6: (93.654,121.380,-1.489)
C5: (93.655,121.179,-2.872)
C4: (92.976,122.104,-3.639)
P: (94.725,119.056,-8.947)
C4': (91.924,121.694,-8.266)
C2': (93.551,122.949,-7.080)
C2: (92.391,123.273,-1.881)
N1: (93.001,122.459,-1.015)
N3: (92.314,123.186,-3.199)
N6: (94.254,120.567,-0.621)
N7: (94.224,120.198,-3.673)
N9: (93.114,121.688,-4.939)
O5': (93.930,120.402,-8.651)
O3': (91.816,124.078,-8.263)
OP2: (96.187,119.272,-8.757)
C3': (92.720,122.991,-8.353)
C1': (92.537,122.352,-6.105)
C5': (92.533,120.520,-8.988)
O4': (91.811,121.393,-6.848)
C8: (93.877,120.545,-4.887)
O2': (93.994,124.225,-6.659)
C6: (93.654,121.380,-1.489)
C5: (93.655,121.179,-2.872)
C4: (92.976,122.104,-3.639)
P: (94.725,119.056,-8.947)
C4': (91.924,121.694,-8.266)
C2': (93.551,122.949,-7.080)
C2: (92.391,123.273,-1.881)
N1: (93.001,122.459,-1.015)
N3: (92.314,123.186,-3.199)
N6: (94.254,120.567,-0.621)
N7: (94.224,120.198,-3.673)
N9: (93.114,121.688,-4.939)
O5': (93.930,120.402,-8.651)
O3': (91.816,124.078,-8.263)
Image (generated by PyMOL):