Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VON:D1:D3
Extra
PDB:
ATOM 1 P U A 1 -22.617 -26.516 -45.448 1.00 26.53 P
ATOM 2 OP1 U A 1 -21.741 -25.330 -45.633 1.00 27.82 O
ATOM 3 OP2 U A 1 -24.092 -26.339 -45.405 1.00 27.30 O
ATOM 4 O5' U A 1 -22.189 -27.212 -44.081 1.00 25.66 O
ATOM 5 C5' U A 1 -20.885 -27.810 -43.918 1.00 25.20 C
ATOM 6 C4' U A 1 -20.812 -28.507 -42.582 1.00 27.18 C
ATOM 7 O4' U A 1 -20.869 -27.504 -41.535 1.00 26.08 O
ATOM 8 C3' U A 1 -21.963 -29.474 -42.318 1.00 27.80 C
ATOM 9 O3' U A 1 -21.481 -30.542 -41.514 1.00 30.63 O
ATOM 10 C2' U A 1 -22.945 -28.626 -41.513 1.00 27.79 C
ATOM 11 O2' U A 1 -23.787 -29.374 -40.659 1.00 28.20 O
ATOM 12 C1' U A 1 -21.997 -27.730 -40.716 1.00 27.12 C
ATOM 13 N1 U A 1 -22.569 -26.424 -40.354 1.00 26.11 N
ATOM 14 C2 U A 1 -23.121 -26.295 -39.095 1.00 25.54 C
ATOM 15 O2 U A 1 -23.163 -27.210 -38.291 1.00 24.96 O
ATOM 16 N3 U A 1 -23.622 -25.049 -38.810 1.00 25.36 N
ATOM 17 C4 U A 1 -23.631 -23.946 -39.636 1.00 25.44 C
ATOM 18 O4 U A 1 -24.139 -22.896 -39.238 1.00 27.39 O
ATOM 19 C5 U A 1 -23.047 -24.161 -40.921 1.00 25.54 C
ATOM 20 C6 U A 1 -22.550 -25.362 -41.230 1.00 25.48 C
ATOM 21 P A A 2 -21.810 -32.059 -41.912 1.00 32.45 P
ATOM 22 OP1 A A 2 -21.470 -32.873 -40.717 1.00 33.26 O
ATOM 23 OP2 A A 2 -23.178 -32.138 -42.494 1.00 35.41 O
ATOM 24 O5' A A 2 -20.768 -32.396 -43.068 1.00 31.56 O
TER
ATOM 1 O3' A B 2 -17.952 -30.209 -43.729 1.00 36.68 O
ATOM 2 P A B 3 -16.363 -30.007 -43.824 1.00 34.21 P
ATOM 3 OP1 A B 3 -15.766 -30.777 -42.704 1.00 33.13 O
ATOM 4 OP2 A B 3 -15.892 -30.243 -45.211 1.00 37.43 O
ATOM 5 O5' A B 3 -16.244 -28.462 -43.509 1.00 29.82 O
ATOM 6 C5' A B 3 -16.955 -27.511 -44.307 1.00 24.07 C
ATOM 7 C4' A B 3 -16.790 -26.139 -43.727 1.00 23.85 C
ATOM 8 O4' A B 3 -17.852 -25.848 -42.778 1.00 22.99 O
ATOM 9 C3' A B 3 -15.467 -25.929 -42.999 1.00 23.34 C
ATOM 10 O3' A B 3 -14.910 -24.672 -43.349 1.00 22.28 O
ATOM 11 C2' A B 3 -15.879 -25.971 -41.530 1.00 23.28 C
ATOM 12 O2' A B 3 -15.028 -25.239 -40.674 1.00 26.95 O
ATOM 13 C1' A B 3 -17.281 -25.362 -41.585 1.00 23.32 C
ATOM 14 N9 A B 3 -18.148 -25.706 -40.455 1.00 20.99 N
ATOM 15 C8 A B 3 -18.287 -26.916 -39.818 1.00 20.59 C
ATOM 16 N7 A B 3 -19.095 -26.879 -38.786 1.00 21.02 N
ATOM 17 C5 A B 3 -19.525 -25.560 -38.743 1.00 20.12 C
ATOM 18 C6 A B 3 -20.385 -24.869 -37.863 1.00 22.15 C
ATOM 19 N6 A B 3 -20.960 -25.430 -36.793 1.00 23.58 N
ATOM 20 N1 A B 3 -20.628 -23.563 -38.116 1.00 21.49 N
ATOM 21 C2 A B 3 -20.028 -22.994 -39.171 1.00 20.87 C
ATOM 22 N3 A B 3 -19.186 -23.531 -40.055 1.00 22.58 N
ATOM 23 C4 A B 3 -18.972 -24.832 -39.781 1.00 21.45 C
ATOM 24 P U B 4 -13.551 -24.622 -44.205 1.00 22.61 P
ATOM 25 OP1 U B 4 -13.648 -25.615 -45.307 1.00 22.99 O
ATOM 26 OP2 U B 4 -13.261 -23.196 -44.522 1.00 23.23 O
ATOM 27 O5' U B 4 -12.434 -25.150 -43.200 1.00 21.69 O
TER
ATOM 2 OP1 U A 1 -21.741 -25.330 -45.633 1.00 27.82 O
ATOM 3 OP2 U A 1 -24.092 -26.339 -45.405 1.00 27.30 O
ATOM 4 O5' U A 1 -22.189 -27.212 -44.081 1.00 25.66 O
ATOM 5 C5' U A 1 -20.885 -27.810 -43.918 1.00 25.20 C
ATOM 6 C4' U A 1 -20.812 -28.507 -42.582 1.00 27.18 C
ATOM 7 O4' U A 1 -20.869 -27.504 -41.535 1.00 26.08 O
ATOM 8 C3' U A 1 -21.963 -29.474 -42.318 1.00 27.80 C
ATOM 9 O3' U A 1 -21.481 -30.542 -41.514 1.00 30.63 O
ATOM 10 C2' U A 1 -22.945 -28.626 -41.513 1.00 27.79 C
ATOM 11 O2' U A 1 -23.787 -29.374 -40.659 1.00 28.20 O
ATOM 12 C1' U A 1 -21.997 -27.730 -40.716 1.00 27.12 C
ATOM 13 N1 U A 1 -22.569 -26.424 -40.354 1.00 26.11 N
ATOM 14 C2 U A 1 -23.121 -26.295 -39.095 1.00 25.54 C
ATOM 15 O2 U A 1 -23.163 -27.210 -38.291 1.00 24.96 O
ATOM 16 N3 U A 1 -23.622 -25.049 -38.810 1.00 25.36 N
ATOM 17 C4 U A 1 -23.631 -23.946 -39.636 1.00 25.44 C
ATOM 18 O4 U A 1 -24.139 -22.896 -39.238 1.00 27.39 O
ATOM 19 C5 U A 1 -23.047 -24.161 -40.921 1.00 25.54 C
ATOM 20 C6 U A 1 -22.550 -25.362 -41.230 1.00 25.48 C
ATOM 21 P A A 2 -21.810 -32.059 -41.912 1.00 32.45 P
ATOM 22 OP1 A A 2 -21.470 -32.873 -40.717 1.00 33.26 O
ATOM 23 OP2 A A 2 -23.178 -32.138 -42.494 1.00 35.41 O
ATOM 24 O5' A A 2 -20.768 -32.396 -43.068 1.00 31.56 O
TER
ATOM 1 O3' A B 2 -17.952 -30.209 -43.729 1.00 36.68 O
ATOM 2 P A B 3 -16.363 -30.007 -43.824 1.00 34.21 P
ATOM 3 OP1 A B 3 -15.766 -30.777 -42.704 1.00 33.13 O
ATOM 4 OP2 A B 3 -15.892 -30.243 -45.211 1.00 37.43 O
ATOM 5 O5' A B 3 -16.244 -28.462 -43.509 1.00 29.82 O
ATOM 6 C5' A B 3 -16.955 -27.511 -44.307 1.00 24.07 C
ATOM 7 C4' A B 3 -16.790 -26.139 -43.727 1.00 23.85 C
ATOM 8 O4' A B 3 -17.852 -25.848 -42.778 1.00 22.99 O
ATOM 9 C3' A B 3 -15.467 -25.929 -42.999 1.00 23.34 C
ATOM 10 O3' A B 3 -14.910 -24.672 -43.349 1.00 22.28 O
ATOM 11 C2' A B 3 -15.879 -25.971 -41.530 1.00 23.28 C
ATOM 12 O2' A B 3 -15.028 -25.239 -40.674 1.00 26.95 O
ATOM 13 C1' A B 3 -17.281 -25.362 -41.585 1.00 23.32 C
ATOM 14 N9 A B 3 -18.148 -25.706 -40.455 1.00 20.99 N
ATOM 15 C8 A B 3 -18.287 -26.916 -39.818 1.00 20.59 C
ATOM 16 N7 A B 3 -19.095 -26.879 -38.786 1.00 21.02 N
ATOM 17 C5 A B 3 -19.525 -25.560 -38.743 1.00 20.12 C
ATOM 18 C6 A B 3 -20.385 -24.869 -37.863 1.00 22.15 C
ATOM 19 N6 A B 3 -20.960 -25.430 -36.793 1.00 23.58 N
ATOM 20 N1 A B 3 -20.628 -23.563 -38.116 1.00 21.49 N
ATOM 21 C2 A B 3 -20.028 -22.994 -39.171 1.00 20.87 C
ATOM 22 N3 A B 3 -19.186 -23.531 -40.055 1.00 22.58 N
ATOM 23 C4 A B 3 -18.972 -24.832 -39.781 1.00 21.45 C
ATOM 24 P U B 4 -13.551 -24.622 -44.205 1.00 22.61 P
ATOM 25 OP1 U B 4 -13.648 -25.615 -45.307 1.00 22.99 O
ATOM 26 OP2 U B 4 -13.261 -23.196 -44.522 1.00 23.23 O
ATOM 27 O5' U B 4 -12.434 -25.150 -43.200 1.00 21.69 O
TER
Atoms:
C4: (-23.631,-23.946,-39.636)
N3: (-23.622,-25.049,-38.810)
OP1: (-21.741,-25.330,-45.633)
OP2: (-24.092,-26.339,-45.405)
C2: (-23.121,-26.295,-39.095)
C1': (-21.997,-27.730,-40.716)
C3': (-21.963,-29.474,-42.318)
O5': (-22.189,-27.212,-44.081)
O4': (-20.869,-27.504,-41.535)
C5': (-20.885,-27.810,-43.918)
P: (-22.617,-26.516,-45.448)
C4': (-20.812,-28.507,-42.582)
C2': (-22.945,-28.626,-41.513)
O2': (-23.787,-29.374,-40.659)
N1: (-22.569,-26.424,-40.354)
O4: (-24.139,-22.896,-39.238)
O2: (-23.163,-27.210,-38.291)
C6: (-22.550,-25.362,-41.230)
C5: (-23.047,-24.161,-40.921)
O3': (-21.481,-30.542,-41.514)
N3: (-23.622,-25.049,-38.810)
OP1: (-21.741,-25.330,-45.633)
OP2: (-24.092,-26.339,-45.405)
C2: (-23.121,-26.295,-39.095)
C1': (-21.997,-27.730,-40.716)
C3': (-21.963,-29.474,-42.318)
O5': (-22.189,-27.212,-44.081)
O4': (-20.869,-27.504,-41.535)
C5': (-20.885,-27.810,-43.918)
P: (-22.617,-26.516,-45.448)
C4': (-20.812,-28.507,-42.582)
C2': (-22.945,-28.626,-41.513)
O2': (-23.787,-29.374,-40.659)
N1: (-22.569,-26.424,-40.354)
O4: (-24.139,-22.896,-39.238)
O2: (-23.163,-27.210,-38.291)
C6: (-22.550,-25.362,-41.230)
C5: (-23.047,-24.161,-40.921)
O3': (-21.481,-30.542,-41.514)
OP1: (-15.766,-30.777,-42.704)
OP2: (-15.892,-30.243,-45.211)
C3': (-15.467,-25.929,-42.999)
C1': (-17.281,-25.362,-41.585)
C5': (-16.955,-27.511,-44.307)
O4': (-17.852,-25.848,-42.778)
C8: (-18.287,-26.916,-39.818)
O2': (-15.028,-25.239,-40.674)
C6: (-20.385,-24.869,-37.863)
C5: (-19.525,-25.560,-38.743)
C4: (-18.972,-24.832,-39.781)
P: (-16.363,-30.007,-43.824)
C4': (-16.790,-26.139,-43.727)
C2': (-15.879,-25.971,-41.530)
C2: (-20.028,-22.994,-39.171)
N1: (-20.628,-23.563,-38.116)
N3: (-19.186,-23.531,-40.055)
N6: (-20.960,-25.430,-36.793)
N7: (-19.095,-26.879,-38.786)
N9: (-18.148,-25.706,-40.455)
O5': (-16.244,-28.462,-43.509)
O3': (-14.910,-24.672,-43.349)
OP2: (-15.892,-30.243,-45.211)
C3': (-15.467,-25.929,-42.999)
C1': (-17.281,-25.362,-41.585)
C5': (-16.955,-27.511,-44.307)
O4': (-17.852,-25.848,-42.778)
C8: (-18.287,-26.916,-39.818)
O2': (-15.028,-25.239,-40.674)
C6: (-20.385,-24.869,-37.863)
C5: (-19.525,-25.560,-38.743)
C4: (-18.972,-24.832,-39.781)
P: (-16.363,-30.007,-43.824)
C4': (-16.790,-26.139,-43.727)
C2': (-15.879,-25.971,-41.530)
C2: (-20.028,-22.994,-39.171)
N1: (-20.628,-23.563,-38.116)
N3: (-19.186,-23.531,-40.055)
N6: (-20.960,-25.430,-36.793)
N7: (-19.095,-26.879,-38.786)
N9: (-18.148,-25.706,-40.455)
O5': (-16.244,-28.462,-43.509)
O3': (-14.910,-24.672,-43.349)
Image (generated by PyMOL):