ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A2020:A2021

Extra

PDB:
ATOM 1 O3' G A2019 49.970 118.924 105.935 1.00 32.57 O
ATOM 2 P A A2020 48.419 118.906 105.583 1.00 31.28 P
ATOM 3 OP1 A A2020 47.679 118.463 106.786 1.00 29.69 O
ATOM 4 OP2 A A2020 48.276 118.182 104.329 1.00 31.53 O
ATOM 5 O5' A A2020 48.087 120.421 105.258 1.00 30.92 O
ATOM 6 C5' A A2020 47.460 121.274 106.216 1.00 31.37 C
ATOM 7 C4' A A2020 46.087 121.628 105.734 1.00 32.70 C
ATOM 8 O4' A A2020 45.327 120.424 105.444 1.00 33.55 O
ATOM 9 C3' A A2020 45.262 122.410 106.735 1.00 33.65 C
ATOM 10 O3' A A2020 44.433 123.278 105.981 1.00 37.67 O
ATOM 11 C2' A A2020 44.395 121.328 107.362 1.00 34.04 C
ATOM 12 O2' A A2020 43.184 121.752 107.935 1.00 34.66 O
ATOM 13 C1' A A2020 44.103 120.486 106.136 1.00 34.22 C
ATOM 14 N9 A A2020 43.611 119.149 106.408 1.00 35.61 N
ATOM 15 C8 A A2020 43.991 118.246 107.358 1.00 37.31 C
ATOM 16 N7 A A2020 43.323 117.123 107.311 1.00 37.62 N
ATOM 17 C5 A A2020 42.446 117.305 106.251 1.00 37.31 C
ATOM 18 C6 A A2020 41.468 116.480 105.670 1.00 37.96 C
ATOM 19 N6 A A2020 41.183 115.246 106.098 1.00 36.95 N
ATOM 20 N1 A A2020 40.781 116.973 104.625 1.00 38.42 N
ATOM 21 C2 A A2020 41.058 118.210 104.212 1.00 38.39 C
ATOM 22 N3 A A2020 41.944 119.075 104.677 1.00 38.58 N
ATOM 23 C4 A A2020 42.611 118.551 105.702 1.00 36.62 C
ATOM 24 P G A2021 44.973 124.714 105.529 1.00 39.88 P
ATOM 25 OP1 G A2021 45.048 124.748 104.045 1.00 37.93 O
ATOM 26 OP2 G A2021 46.139 125.116 106.333 1.00 41.82 O
ATOM 27 O5' G A2021 43.814 125.671 106.009 1.00 38.24 O
TER

ATOM 1 O3' A B2020 44.433 123.278 105.981 1.00 37.67 O
ATOM 2 P G B2021 44.973 124.714 105.529 1.00 39.88 P
ATOM 3 OP1 G B2021 45.048 124.748 104.045 1.00 37.93 O
ATOM 4 OP2 G B2021 46.139 125.116 106.333 1.00 41.82 O
ATOM 5 O5' G B2021 43.814 125.671 106.009 1.00 38.24 O
ATOM 6 C5' G B2021 43.538 125.824 107.388 1.00 36.83 C
ATOM 7 C4' G B2021 42.177 126.405 107.542 1.00 38.83 C
ATOM 8 O4' G B2021 42.169 127.695 106.884 1.00 40.34 O
ATOM 9 C3' G B2021 41.114 125.610 106.814 1.00 36.99 C
ATOM 10 O3' G B2021 40.595 124.595 107.644 1.00 34.76 O
ATOM 11 C2' G B2021 40.085 126.672 106.478 1.00 36.94 C
ATOM 12 O2' G B2021 39.355 127.001 107.642 1.00 35.70 O
ATOM 13 C1' G B2021 40.982 127.852 106.121 1.00 37.50 C
ATOM 14 N9 G B2021 41.374 127.898 104.713 1.00 37.29 N
ATOM 15 C8 G B2021 42.666 127.942 104.258 1.00 37.59 C
ATOM 16 N7 G B2021 42.761 128.006 102.962 1.00 37.41 N
ATOM 17 C5 G B2021 41.451 127.995 102.521 1.00 37.22 C
ATOM 18 C6 G B2021 40.956 128.034 101.221 1.00 37.30 C
ATOM 19 O6 G B2021 41.599 128.083 100.172 1.00 37.20 O
ATOM 20 N1 G B2021 39.559 128.003 101.197 1.00 38.13 N
ATOM 21 C2 G B2021 38.749 127.938 102.307 1.00 38.33 C
ATOM 22 N2 G B2021 37.432 127.934 102.079 1.00 38.95 N
ATOM 23 N3 G B2021 39.209 127.888 103.548 1.00 38.41 N
ATOM 24 C4 G B2021 40.569 127.922 103.583 1.00 37.88 C
ATOM 25 P U B2022 40.416 123.126 107.059 1.00 33.99 P
ATOM 26 OP1 U B2022 40.064 122.310 108.221 1.00 32.75 O
ATOM 27 OP2 U B2022 41.609 122.777 106.242 1.00 33.64 O
ATOM 28 O5' U B2022 39.199 123.234 106.038 1.00 33.63 O
TER

Atoms:
OP1: (47.679,118.463,106.786)
OP2: (48.276,118.182,104.329)
C3': (45.262,122.410,106.735)
C1': (44.103,120.486,106.136)
C5': (47.460,121.274,106.216)
O4': (45.327,120.424,105.444)
C8: (43.991,118.246,107.358)
O2': (43.184,121.752,107.935)
C6: (41.468,116.480,105.670)
C5: (42.446,117.305,106.251)
C4: (42.611,118.551,105.702)
P: (48.419,118.906,105.583)
C4': (46.087,121.628,105.734)
C2': (44.395,121.328,107.362)
C2: (41.058,118.210,104.212)
N1: (40.781,116.973,104.625)
N3: (41.944,119.075,104.677)
N6: (41.183,115.246,106.098)
N7: (43.323,117.123,107.311)
N9: (43.611,119.149,106.408)
O5': (48.087,120.421,105.258)
O3': (44.433,123.278,105.981)
OP1: (45.048,124.748,104.045)
OP2: (46.139,125.116,106.333)
C3': (41.114,125.610,106.814)
C1': (40.982,127.852,106.121)
C5': (43.538,125.824,107.388)
O6: (41.599,128.083,100.172)
O4': (42.169,127.695,106.884)
C8: (42.666,127.942,104.258)
C2: (38.749,127.938,102.307)
C6: (40.956,128.034,101.221)
C5: (41.451,127.995,102.521)
C4: (40.569,127.922,103.583)
P: (44.973,124.714,105.529)
C4': (42.177,126.405,107.542)
C2': (40.085,126.672,106.478)
O2': (39.355,127.001,107.642)
N1: (39.559,128.003,101.197)
N2: (37.432,127.934,102.079)
N3: (39.209,127.888,103.548)
N7: (42.761,128.006,102.962)
N9: (41.374,127.898,104.713)
O5': (43.814,125.671,106.009)
O3': (40.595,124.595,107.644)
Image (generated by PyMOL):
PyMOL image
show in jmol