ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YI2:02020:02021

Extra

PDB:
ATOM 1 O3' G A2019 49.947 118.615 105.529 1.00 33.01 O
ATOM 2 P A A2020 48.382 118.578 105.205 1.00 35.39 P
ATOM 3 OP1 A A2020 47.702 118.105 106.437 1.00 32.90 O
ATOM 4 OP2 A A2020 48.175 117.849 103.931 1.00 35.91 O
ATOM 5 O5' A A2020 48.015 120.102 104.941 1.00 34.61 O
ATOM 6 C5' A A2020 47.386 120.895 105.950 1.00 33.77 C
ATOM 7 C4' A A2020 46.040 121.352 105.465 1.00 36.68 C
ATOM 8 O4' A A2020 45.228 120.189 105.132 1.00 36.86 O
ATOM 9 C3' A A2020 45.223 122.154 106.469 1.00 37.19 C
ATOM 10 O3' A A2020 44.392 123.054 105.747 1.00 40.84 O
ATOM 11 C2' A A2020 44.334 121.078 107.077 1.00 36.88 C
ATOM 12 O2' A A2020 43.152 121.577 107.660 1.00 40.27 O
ATOM 13 C1' A A2020 44.010 120.261 105.833 1.00 35.74 C
ATOM 14 N9 A A2020 43.502 118.911 106.047 1.00 35.68 N
ATOM 15 C8 A A2020 43.890 117.961 106.956 1.00 36.00 C
ATOM 16 N7 A A2020 43.220 116.841 106.864 1.00 36.05 N
ATOM 17 C5 A A2020 42.327 117.072 105.827 1.00 36.39 C
ATOM 18 C6 A A2020 41.335 116.272 105.226 1.00 36.68 C
ATOM 19 N6 A A2020 41.049 115.022 105.607 1.00 35.63 N
ATOM 20 N1 A A2020 40.634 116.808 104.205 1.00 36.66 N
ATOM 21 C2 A A2020 40.908 118.056 103.826 1.00 35.18 C
ATOM 22 N3 A A2020 41.805 118.905 104.312 1.00 35.97 N
ATOM 23 C4 A A2020 42.490 118.344 105.319 1.00 35.33 C
ATOM 24 P G A2021 44.960 124.479 105.279 1.00 43.69 P
ATOM 25 OP1 G A2021 45.009 124.446 103.791 1.00 42.63 O
ATOM 26 OP2 G A2021 46.184 124.810 106.052 1.00 43.04 O
ATOM 27 O5' G A2021 43.816 125.495 105.714 1.00 40.40 O
TER

ATOM 1 O3' A B2020 44.392 123.054 105.747 1.00 40.84 O
ATOM 2 P G B2021 44.960 124.479 105.279 1.00 43.69 P
ATOM 3 OP1 G B2021 45.009 124.446 103.791 1.00 42.63 O
ATOM 4 OP2 G B2021 46.184 124.810 106.052 1.00 43.04 O
ATOM 5 O5' G B2021 43.816 125.495 105.714 1.00 40.40 O
ATOM 6 C5' G B2021 43.405 125.602 107.088 1.00 37.23 C
ATOM 7 C4' G B2021 42.028 126.208 107.163 1.00 36.52 C
ATOM 8 O4' G B2021 42.052 127.475 106.458 1.00 36.55 O
ATOM 9 C3' G B2021 40.937 125.414 106.465 1.00 36.13 C
ATOM 10 O3' G B2021 40.375 124.434 107.318 1.00 35.33 O
ATOM 11 C2' G B2021 39.932 126.491 106.105 1.00 35.48 C
ATOM 12 O2' G B2021 39.179 126.880 107.236 1.00 34.96 O
ATOM 13 C1' G B2021 40.867 127.633 105.704 1.00 35.54 C
ATOM 14 N9 G B2021 41.251 127.678 104.293 1.00 37.06 N
ATOM 15 C8 G B2021 42.531 127.770 103.803 1.00 37.14 C
ATOM 16 N7 G B2021 42.580 127.861 102.504 1.00 36.21 N
ATOM 17 C5 G B2021 41.256 127.813 102.106 1.00 36.92 C
ATOM 18 C6 G B2021 40.695 127.880 100.813 1.00 38.42 C
ATOM 19 O6 G B2021 41.278 128.019 99.726 1.00 38.21 O
ATOM 20 N1 G B2021 39.309 127.773 100.856 1.00 39.28 N
ATOM 21 C2 G B2021 38.563 127.628 102.000 1.00 39.18 C
ATOM 22 N2 G B2021 37.239 127.526 101.835 1.00 40.44 N
ATOM 23 N3 G B2021 39.076 127.581 103.214 1.00 37.02 N
ATOM 24 C4 G B2021 40.420 127.677 103.194 1.00 36.96 C
ATOM 25 P U B2022 40.191 122.939 106.783 1.00 36.94 P
ATOM 26 OP1 U B2022 39.789 122.115 107.941 1.00 37.88 O
ATOM 27 OP2 U B2022 41.404 122.588 106.014 1.00 35.03 O
ATOM 28 O5' U B2022 38.987 123.016 105.743 1.00 35.91 O
TER

Atoms:
OP1: (47.702,118.105,106.437)
OP2: (48.175,117.849,103.931)
C3': (45.223,122.154,106.469)
C1': (44.010,120.261,105.833)
C5': (47.386,120.895,105.950)
O4': (45.228,120.189,105.132)
C8: (43.890,117.961,106.956)
O2': (43.152,121.577,107.660)
C6: (41.335,116.272,105.226)
C5: (42.327,117.072,105.827)
C4: (42.490,118.344,105.319)
P: (48.382,118.578,105.205)
C4': (46.040,121.352,105.465)
C2': (44.334,121.078,107.077)
C2: (40.908,118.056,103.826)
N1: (40.634,116.808,104.205)
N3: (41.805,118.905,104.312)
N6: (41.049,115.022,105.607)
N7: (43.220,116.841,106.864)
N9: (43.502,118.911,106.047)
O5': (48.015,120.102,104.941)
O3': (44.392,123.054,105.747)
OP1: (45.009,124.446,103.791)
OP2: (46.184,124.810,106.052)
C3': (40.937,125.414,106.465)
C1': (40.867,127.633,105.704)
C5': (43.405,125.602,107.088)
O6: (41.278,128.019,99.726)
O4': (42.052,127.475,106.458)
C8: (42.531,127.770,103.803)
C2: (38.563,127.628,102.000)
C6: (40.695,127.880,100.813)
C5: (41.256,127.813,102.106)
C4: (40.420,127.677,103.194)
P: (44.960,124.479,105.279)
C4': (42.028,126.208,107.163)
C2': (39.932,126.491,106.105)
O2': (39.179,126.880,107.236)
N1: (39.309,127.773,100.856)
N2: (37.239,127.526,101.835)
N3: (39.076,127.581,103.214)
N7: (42.580,127.861,102.504)
N9: (41.251,127.678,104.293)
O5': (43.816,125.495,105.714)
O3': (40.375,124.434,107.318)
Image (generated by PyMOL):
PyMOL image
show in jmol