ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIT:02020:02021

Extra

PDB:
ATOM 1 O3' G A2019 50.016 118.620 105.449 1.00 30.41 O
ATOM 2 P A A2020 48.447 118.599 105.117 1.00 29.42 P
ATOM 3 OP1 A A2020 47.766 118.116 106.351 1.00 28.13 O
ATOM 4 OP2 A A2020 48.216 117.903 103.830 1.00 30.32 O
ATOM 5 O5' A A2020 48.079 120.125 104.877 1.00 29.14 O
ATOM 6 C5' A A2020 47.452 120.899 105.902 1.00 29.42 C
ATOM 7 C4' A A2020 46.085 121.331 105.448 1.00 30.07 C
ATOM 8 O4' A A2020 45.288 120.155 105.127 1.00 30.06 O
ATOM 9 C3' A A2020 45.285 122.109 106.481 1.00 30.63 C
ATOM 10 O3' A A2020 44.453 123.035 105.804 1.00 34.08 O
ATOM 11 C2' A A2020 44.402 121.027 107.082 1.00 31.33 C
ATOM 12 O2' A A2020 43.225 121.532 107.671 1.00 34.75 O
ATOM 13 C1' A A2020 44.076 120.216 105.834 1.00 31.09 C
ATOM 14 N9 A A2020 43.572 118.861 106.042 1.00 31.60 N
ATOM 15 C8 A A2020 43.955 117.915 106.959 1.00 33.38 C
ATOM 16 N7 A A2020 43.277 116.796 106.875 1.00 34.22 N
ATOM 17 C5 A A2020 42.392 117.021 105.830 1.00 34.64 C
ATOM 18 C6 A A2020 41.401 116.217 105.228 1.00 36.10 C
ATOM 19 N6 A A2020 41.110 114.970 105.612 1.00 36.59 N
ATOM 20 N1 A A2020 40.706 116.746 104.201 1.00 36.30 N
ATOM 21 C2 A A2020 40.984 117.992 103.817 1.00 35.89 C
ATOM 22 N3 A A2020 41.884 118.843 104.299 1.00 35.17 N
ATOM 23 C4 A A2020 42.564 118.289 105.313 1.00 33.02 C
ATOM 24 P G A2021 45.049 124.439 105.307 1.00 37.71 P
ATOM 25 OP1 G A2021 45.149 124.358 103.816 1.00 34.70 O
ATOM 26 OP2 G A2021 46.249 124.799 106.111 1.00 35.71 O
ATOM 27 O5' G A2021 43.906 125.475 105.687 1.00 34.47 O
TER

ATOM 1 O3' A B2020 44.453 123.035 105.804 1.00 34.08 O
ATOM 2 P G B2021 45.049 124.439 105.307 1.00 37.71 P
ATOM 3 OP1 G B2021 45.149 124.358 103.816 1.00 34.70 O
ATOM 4 OP2 G B2021 46.249 124.799 106.111 1.00 35.71 O
ATOM 5 O5' G B2021 43.906 125.475 105.687 1.00 34.47 O
ATOM 6 C5' G B2021 43.489 125.645 107.052 1.00 32.76 C
ATOM 7 C4' G B2021 42.098 126.218 107.088 1.00 31.98 C
ATOM 8 O4' G B2021 42.102 127.477 106.371 1.00 32.83 O
ATOM 9 C3' G B2021 41.052 125.385 106.373 1.00 31.11 C
ATOM 10 O3' G B2021 40.511 124.410 107.242 1.00 31.01 O
ATOM 11 C2' G B2021 40.021 126.428 105.990 1.00 30.62 C
ATOM 12 O2' G B2021 39.248 126.805 107.108 1.00 30.01 O
ATOM 13 C1' G B2021 40.926 127.596 105.596 1.00 31.52 C
ATOM 14 N9 G B2021 41.328 127.631 104.191 1.00 33.82 N
ATOM 15 C8 G B2021 42.615 127.661 103.712 1.00 34.14 C
ATOM 16 N7 G B2021 42.679 127.724 102.412 1.00 34.84 N
ATOM 17 C5 G B2021 41.357 127.731 102.004 1.00 35.91 C
ATOM 18 C6 G B2021 40.808 127.793 100.708 1.00 38.89 C
ATOM 19 O6 G B2021 41.403 127.867 99.620 1.00 40.93 O
ATOM 20 N1 G B2021 39.417 127.763 100.742 1.00 38.94 N
ATOM 21 C2 G B2021 38.658 127.684 101.881 1.00 37.04 C
ATOM 22 N2 G B2021 37.334 127.650 101.705 1.00 38.80 N
ATOM 23 N3 G B2021 39.160 127.638 103.098 1.00 35.74 N
ATOM 24 C4 G B2021 40.507 127.664 103.087 1.00 35.04 C
ATOM 25 P U B2022 40.288 122.913 106.722 1.00 33.03 P
ATOM 26 OP1 U B2022 39.825 122.166 107.911 1.00 34.05 O
ATOM 27 OP2 U B2022 41.491 122.453 105.982 1.00 32.83 O
ATOM 28 O5' U B2022 39.095 123.015 105.674 1.00 31.71 O
TER

Atoms:
OP1: (47.766,118.116,106.351)
OP2: (48.216,117.903,103.830)
C3': (45.285,122.109,106.481)
C1': (44.076,120.216,105.834)
C5': (47.452,120.899,105.902)
O4': (45.288,120.155,105.127)
C8: (43.955,117.915,106.959)
O2': (43.225,121.532,107.671)
C6: (41.401,116.217,105.228)
C5: (42.392,117.021,105.830)
C4: (42.564,118.289,105.313)
P: (48.447,118.599,105.117)
C4': (46.085,121.331,105.448)
C2': (44.402,121.027,107.082)
C2: (40.984,117.992,103.817)
N1: (40.706,116.746,104.201)
N3: (41.884,118.843,104.299)
N6: (41.110,114.970,105.612)
N7: (43.277,116.796,106.875)
N9: (43.572,118.861,106.042)
O5': (48.079,120.125,104.877)
O3': (44.453,123.035,105.804)
OP1: (45.149,124.358,103.816)
OP2: (46.249,124.799,106.111)
C3': (41.052,125.385,106.373)
C1': (40.926,127.596,105.596)
C5': (43.489,125.645,107.052)
O6: (41.403,127.867,99.620)
O4': (42.102,127.477,106.371)
C8: (42.615,127.661,103.712)
C2: (38.658,127.684,101.881)
C6: (40.808,127.793,100.708)
C5: (41.357,127.731,102.004)
C4: (40.507,127.664,103.087)
P: (45.049,124.439,105.307)
C4': (42.098,126.218,107.088)
C2': (40.021,126.428,105.990)
O2': (39.248,126.805,107.108)
N1: (39.417,127.763,100.742)
N2: (37.334,127.650,101.705)
N3: (39.160,127.638,103.098)
N7: (42.679,127.724,102.412)
N9: (41.328,127.631,104.191)
O5': (43.906,125.475,105.687)
O3': (40.511,124.410,107.242)
Image (generated by PyMOL):
PyMOL image
show in jmol