ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:02020:02021

Extra

PDB:
ATOM 1 O3' G A2019 50.099 118.989 105.885 1.00 38.83 O
ATOM 2 P A A2020 48.572 119.003 105.413 1.00 39.17 P
ATOM 3 OP1 A A2020 47.782 118.378 106.503 1.00 38.18 O
ATOM 4 OP2 A A2020 48.513 118.441 104.055 1.00 41.92 O
ATOM 5 O5' A A2020 48.208 120.542 105.292 1.00 38.69 O
ATOM 6 C5' A A2020 47.499 121.223 106.328 1.00 38.96 C
ATOM 7 C4' A A2020 46.171 121.699 105.804 1.00 40.51 C
ATOM 8 O4' A A2020 45.356 120.544 105.460 1.00 40.76 O
ATOM 9 C3' A A2020 45.338 122.519 106.780 1.00 41.75 C
ATOM 10 O3' A A2020 44.541 123.440 106.034 1.00 44.89 O
ATOM 11 C2' A A2020 44.433 121.456 107.387 1.00 41.21 C
ATOM 12 O2' A A2020 43.255 121.986 107.954 1.00 43.42 O
ATOM 13 C1' A A2020 44.132 120.615 106.150 1.00 40.47 C
ATOM 14 N9 A A2020 43.622 119.259 106.360 1.00 39.64 N
ATOM 15 C8 A A2020 43.992 118.312 107.279 1.00 41.54 C
ATOM 16 N7 A A2020 43.310 117.198 107.193 1.00 40.82 N
ATOM 17 C5 A A2020 42.429 117.430 106.146 1.00 41.85 C
ATOM 18 C6 A A2020 41.418 116.643 105.556 1.00 42.58 C
ATOM 19 N6 A A2020 41.095 115.414 105.959 1.00 42.30 N
ATOM 20 N1 A A2020 40.736 117.174 104.524 1.00 42.10 N
ATOM 21 C2 A A2020 41.041 118.404 104.124 1.00 42.00 C
ATOM 22 N3 A A2020 41.953 119.242 104.597 1.00 42.37 N
ATOM 23 C4 A A2020 42.620 118.689 105.620 1.00 40.48 C
ATOM 24 P G A2021 45.160 124.849 105.554 1.00 47.82 P
ATOM 25 OP1 G A2021 45.236 124.802 104.059 1.00 44.85 O
ATOM 26 OP2 G A2021 46.374 125.174 106.333 1.00 48.58 O
ATOM 27 O5' G A2021 44.056 125.901 106.006 1.00 44.53 O
TER

ATOM 1 O3' A B2020 44.541 123.440 106.034 1.00 44.89 O
ATOM 2 P G B2021 45.160 124.849 105.554 1.00 47.82 P
ATOM 3 OP1 G B2021 45.236 124.802 104.059 1.00 44.85 O
ATOM 4 OP2 G B2021 46.374 125.174 106.333 1.00 48.58 O
ATOM 5 O5' G B2021 44.056 125.901 106.006 1.00 44.53 O
ATOM 6 C5' G B2021 43.647 125.992 107.381 1.00 42.79 C
ATOM 7 C4' G B2021 42.253 126.565 107.467 1.00 42.66 C
ATOM 8 O4' G B2021 42.247 127.842 106.778 1.00 43.28 O
ATOM 9 C3' G B2021 41.170 125.756 106.770 1.00 40.85 C
ATOM 10 O3' G B2021 40.611 124.779 107.634 1.00 39.33 O
ATOM 11 C2' G B2021 40.149 126.823 106.431 1.00 40.83 C
ATOM 12 O2' G B2021 39.452 127.202 107.597 1.00 39.20 O
ATOM 13 C1' G B2021 41.058 127.980 106.024 1.00 41.56 C
ATOM 14 N9 G B2021 41.435 128.060 104.610 1.00 42.19 N
ATOM 15 C8 G B2021 42.711 128.206 104.124 1.00 42.66 C
ATOM 16 N7 G B2021 42.762 128.307 102.825 1.00 41.86 N
ATOM 17 C5 G B2021 41.442 128.215 102.420 1.00 42.48 C
ATOM 18 C6 G B2021 40.885 128.273 101.127 1.00 43.93 C
ATOM 19 O6 G B2021 41.465 128.448 100.042 1.00 44.71 O
ATOM 20 N1 G B2021 39.506 128.111 101.161 1.00 43.96 N
ATOM 21 C2 G B2021 38.762 127.925 102.293 1.00 43.16 C
ATOM 22 N2 G B2021 37.463 127.740 102.106 1.00 44.94 N
ATOM 23 N3 G B2021 39.263 127.904 103.512 1.00 43.32 N
ATOM 24 C4 G B2021 40.605 128.046 103.504 1.00 43.14 C
ATOM 25 P U B2022 40.327 123.305 107.082 1.00 40.66 P
ATOM 26 OP1 U B2022 39.766 122.520 108.201 1.00 40.47 O
ATOM 27 OP2 U B2022 41.550 122.845 106.393 1.00 40.00 O
ATOM 28 O5' U B2022 39.199 123.480 105.976 1.00 40.02 O
TER

Atoms:
OP1: (47.782,118.378,106.503)
OP2: (48.513,118.441,104.055)
C3': (45.338,122.519,106.780)
C1': (44.132,120.615,106.150)
C5': (47.499,121.223,106.328)
O4': (45.356,120.544,105.460)
C8: (43.992,118.312,107.279)
O2': (43.255,121.986,107.954)
C6: (41.418,116.643,105.556)
C5: (42.429,117.430,106.146)
C4: (42.620,118.689,105.620)
P: (48.572,119.003,105.413)
C4': (46.171,121.699,105.804)
C2': (44.433,121.456,107.387)
C2: (41.041,118.404,104.124)
N1: (40.736,117.174,104.524)
N3: (41.953,119.242,104.597)
N6: (41.095,115.414,105.959)
N7: (43.310,117.198,107.193)
N9: (43.622,119.259,106.360)
O5': (48.208,120.542,105.292)
O3': (44.541,123.440,106.034)
OP1: (45.236,124.802,104.059)
OP2: (46.374,125.174,106.333)
C3': (41.170,125.756,106.770)
C1': (41.058,127.980,106.024)
C5': (43.647,125.992,107.381)
O6: (41.465,128.448,100.042)
O4': (42.247,127.842,106.778)
C8: (42.711,128.206,104.124)
C2: (38.762,127.925,102.293)
C6: (40.885,128.273,101.127)
C5: (41.442,128.215,102.420)
C4: (40.605,128.046,103.504)
P: (45.160,124.849,105.554)
C4': (42.253,126.565,107.467)
C2': (40.149,126.823,106.431)
O2': (39.452,127.202,107.597)
N1: (39.506,128.111,101.161)
N2: (37.463,127.740,102.106)
N3: (39.263,127.904,103.512)
N7: (42.762,128.307,102.825)
N9: (41.435,128.060,104.610)
O5': (44.056,125.901,106.006)
O3': (40.611,124.779,107.634)
Image (generated by PyMOL):
PyMOL image
show in jmol