Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02020:02021
Extra
PDB:
ATOM 1 O3' G A2019 49.939 118.798 105.422 1.00 37.60 O
ATOM 2 P A A2020 48.380 118.824 105.047 1.00 35.87 P
ATOM 3 OP1 A A2020 47.664 118.242 106.208 1.00 34.77 O
ATOM 4 OP2 A A2020 48.182 118.245 103.704 1.00 36.94 O
ATOM 5 O5' A A2020 48.050 120.371 104.914 1.00 36.14 O
ATOM 6 C5' A A2020 47.374 121.081 105.955 1.00 35.89 C
ATOM 7 C4' A A2020 46.017 121.519 105.474 1.00 35.51 C
ATOM 8 O4' A A2020 45.230 120.345 105.121 1.00 35.29 O
ATOM 9 C3' A A2020 45.189 122.282 106.498 1.00 36.78 C
ATOM 10 O3' A A2020 44.354 123.200 105.797 1.00 41.05 O
ATOM 11 C2' A A2020 44.321 121.177 107.086 1.00 36.03 C
ATOM 12 O2' A A2020 43.127 121.636 107.673 1.00 38.97 O
ATOM 13 C1' A A2020 44.015 120.375 105.829 1.00 34.98 C
ATOM 14 N9 A A2020 43.530 119.010 106.017 1.00 34.16 N
ATOM 15 C8 A A2020 43.936 118.044 106.900 1.00 34.66 C
ATOM 16 N7 A A2020 43.262 116.924 106.806 1.00 34.35 N
ATOM 17 C5 A A2020 42.354 117.170 105.788 1.00 36.20 C
ATOM 18 C6 A A2020 41.351 116.379 105.196 1.00 36.82 C
ATOM 19 N6 A A2020 41.071 115.130 105.563 1.00 37.90 N
ATOM 20 N1 A A2020 40.632 116.926 104.197 1.00 37.64 N
ATOM 21 C2 A A2020 40.906 118.182 103.824 1.00 37.44 C
ATOM 22 N3 A A2020 41.814 119.023 104.301 1.00 35.95 N
ATOM 23 C4 A A2020 42.513 118.449 105.292 1.00 35.45 C
ATOM 24 P G A2021 44.939 124.618 105.312 1.00 43.31 P
ATOM 25 OP1 G A2021 45.052 124.543 103.823 1.00 40.45 O
ATOM 26 OP2 G A2021 46.124 124.989 106.129 1.00 41.35 O
ATOM 27 O5' G A2021 43.782 125.640 105.690 1.00 41.04 O
TER
ATOM 1 O3' A B2020 44.354 123.200 105.797 1.00 41.05 O
ATOM 2 P G B2021 44.939 124.618 105.312 1.00 43.31 P
ATOM 3 OP1 G B2021 45.052 124.543 103.823 1.00 40.45 O
ATOM 4 OP2 G B2021 46.124 124.989 106.129 1.00 41.35 O
ATOM 5 O5' G B2021 43.782 125.640 105.690 1.00 41.04 O
ATOM 6 C5' G B2021 43.397 125.837 107.062 1.00 39.76 C
ATOM 7 C4' G B2021 41.994 126.384 107.126 1.00 38.34 C
ATOM 8 O4' G B2021 41.968 127.662 106.450 1.00 38.01 O
ATOM 9 C3' G B2021 40.946 125.546 106.418 1.00 36.48 C
ATOM 10 O3' G B2021 40.399 124.570 107.288 1.00 37.33 O
ATOM 11 C2' G B2021 39.910 126.581 106.033 1.00 35.46 C
ATOM 12 O2' G B2021 39.128 126.929 107.147 1.00 33.11 O
ATOM 13 C1' G B2021 40.802 127.763 105.659 1.00 37.38 C
ATOM 14 N9 G B2021 41.230 127.802 104.262 1.00 39.31 N
ATOM 15 C8 G B2021 42.525 127.837 103.809 1.00 38.95 C
ATOM 16 N7 G B2021 42.614 127.898 102.512 1.00 40.38 N
ATOM 17 C5 G B2021 41.299 127.897 102.077 1.00 40.18 C
ATOM 18 C6 G B2021 40.774 127.949 100.768 1.00 41.44 C
ATOM 19 O6 G B2021 41.390 128.007 99.690 1.00 41.07 O
ATOM 20 N1 G B2021 39.384 127.920 100.778 1.00 42.13 N
ATOM 21 C2 G B2021 38.604 127.843 101.906 1.00 41.29 C
ATOM 22 N2 G B2021 37.285 127.797 101.712 1.00 42.29 N
ATOM 23 N3 G B2021 39.083 127.803 103.130 1.00 40.23 N
ATOM 24 C4 G B2021 40.430 127.831 103.143 1.00 39.72 C
ATOM 25 P U B2022 40.213 123.063 106.775 1.00 39.06 P
ATOM 26 OP1 U B2022 39.757 122.283 107.946 1.00 38.05 O
ATOM 27 OP2 U B2022 41.451 122.669 106.057 1.00 35.76 O
ATOM 28 O5' U B2022 39.022 123.134 105.724 1.00 35.85 O
TER
ATOM 2 P A A2020 48.380 118.824 105.047 1.00 35.87 P
ATOM 3 OP1 A A2020 47.664 118.242 106.208 1.00 34.77 O
ATOM 4 OP2 A A2020 48.182 118.245 103.704 1.00 36.94 O
ATOM 5 O5' A A2020 48.050 120.371 104.914 1.00 36.14 O
ATOM 6 C5' A A2020 47.374 121.081 105.955 1.00 35.89 C
ATOM 7 C4' A A2020 46.017 121.519 105.474 1.00 35.51 C
ATOM 8 O4' A A2020 45.230 120.345 105.121 1.00 35.29 O
ATOM 9 C3' A A2020 45.189 122.282 106.498 1.00 36.78 C
ATOM 10 O3' A A2020 44.354 123.200 105.797 1.00 41.05 O
ATOM 11 C2' A A2020 44.321 121.177 107.086 1.00 36.03 C
ATOM 12 O2' A A2020 43.127 121.636 107.673 1.00 38.97 O
ATOM 13 C1' A A2020 44.015 120.375 105.829 1.00 34.98 C
ATOM 14 N9 A A2020 43.530 119.010 106.017 1.00 34.16 N
ATOM 15 C8 A A2020 43.936 118.044 106.900 1.00 34.66 C
ATOM 16 N7 A A2020 43.262 116.924 106.806 1.00 34.35 N
ATOM 17 C5 A A2020 42.354 117.170 105.788 1.00 36.20 C
ATOM 18 C6 A A2020 41.351 116.379 105.196 1.00 36.82 C
ATOM 19 N6 A A2020 41.071 115.130 105.563 1.00 37.90 N
ATOM 20 N1 A A2020 40.632 116.926 104.197 1.00 37.64 N
ATOM 21 C2 A A2020 40.906 118.182 103.824 1.00 37.44 C
ATOM 22 N3 A A2020 41.814 119.023 104.301 1.00 35.95 N
ATOM 23 C4 A A2020 42.513 118.449 105.292 1.00 35.45 C
ATOM 24 P G A2021 44.939 124.618 105.312 1.00 43.31 P
ATOM 25 OP1 G A2021 45.052 124.543 103.823 1.00 40.45 O
ATOM 26 OP2 G A2021 46.124 124.989 106.129 1.00 41.35 O
ATOM 27 O5' G A2021 43.782 125.640 105.690 1.00 41.04 O
TER
ATOM 1 O3' A B2020 44.354 123.200 105.797 1.00 41.05 O
ATOM 2 P G B2021 44.939 124.618 105.312 1.00 43.31 P
ATOM 3 OP1 G B2021 45.052 124.543 103.823 1.00 40.45 O
ATOM 4 OP2 G B2021 46.124 124.989 106.129 1.00 41.35 O
ATOM 5 O5' G B2021 43.782 125.640 105.690 1.00 41.04 O
ATOM 6 C5' G B2021 43.397 125.837 107.062 1.00 39.76 C
ATOM 7 C4' G B2021 41.994 126.384 107.126 1.00 38.34 C
ATOM 8 O4' G B2021 41.968 127.662 106.450 1.00 38.01 O
ATOM 9 C3' G B2021 40.946 125.546 106.418 1.00 36.48 C
ATOM 10 O3' G B2021 40.399 124.570 107.288 1.00 37.33 O
ATOM 11 C2' G B2021 39.910 126.581 106.033 1.00 35.46 C
ATOM 12 O2' G B2021 39.128 126.929 107.147 1.00 33.11 O
ATOM 13 C1' G B2021 40.802 127.763 105.659 1.00 37.38 C
ATOM 14 N9 G B2021 41.230 127.802 104.262 1.00 39.31 N
ATOM 15 C8 G B2021 42.525 127.837 103.809 1.00 38.95 C
ATOM 16 N7 G B2021 42.614 127.898 102.512 1.00 40.38 N
ATOM 17 C5 G B2021 41.299 127.897 102.077 1.00 40.18 C
ATOM 18 C6 G B2021 40.774 127.949 100.768 1.00 41.44 C
ATOM 19 O6 G B2021 41.390 128.007 99.690 1.00 41.07 O
ATOM 20 N1 G B2021 39.384 127.920 100.778 1.00 42.13 N
ATOM 21 C2 G B2021 38.604 127.843 101.906 1.00 41.29 C
ATOM 22 N2 G B2021 37.285 127.797 101.712 1.00 42.29 N
ATOM 23 N3 G B2021 39.083 127.803 103.130 1.00 40.23 N
ATOM 24 C4 G B2021 40.430 127.831 103.143 1.00 39.72 C
ATOM 25 P U B2022 40.213 123.063 106.775 1.00 39.06 P
ATOM 26 OP1 U B2022 39.757 122.283 107.946 1.00 38.05 O
ATOM 27 OP2 U B2022 41.451 122.669 106.057 1.00 35.76 O
ATOM 28 O5' U B2022 39.022 123.134 105.724 1.00 35.85 O
TER
Atoms:
OP1: (47.664,118.242,106.208)
OP2: (48.182,118.245,103.704)
C3': (45.189,122.282,106.498)
C1': (44.015,120.375,105.829)
C5': (47.374,121.081,105.955)
O4': (45.230,120.345,105.121)
C8: (43.936,118.044,106.900)
O2': (43.127,121.636,107.673)
C6: (41.351,116.379,105.196)
C5: (42.354,117.170,105.788)
C4: (42.513,118.449,105.292)
P: (48.380,118.824,105.047)
C4': (46.017,121.519,105.474)
C2': (44.321,121.177,107.086)
C2: (40.906,118.182,103.824)
N1: (40.632,116.926,104.197)
N3: (41.814,119.023,104.301)
N6: (41.071,115.130,105.563)
N7: (43.262,116.924,106.806)
N9: (43.530,119.010,106.017)
O5': (48.050,120.371,104.914)
O3': (44.354,123.200,105.797)
OP2: (48.182,118.245,103.704)
C3': (45.189,122.282,106.498)
C1': (44.015,120.375,105.829)
C5': (47.374,121.081,105.955)
O4': (45.230,120.345,105.121)
C8: (43.936,118.044,106.900)
O2': (43.127,121.636,107.673)
C6: (41.351,116.379,105.196)
C5: (42.354,117.170,105.788)
C4: (42.513,118.449,105.292)
P: (48.380,118.824,105.047)
C4': (46.017,121.519,105.474)
C2': (44.321,121.177,107.086)
C2: (40.906,118.182,103.824)
N1: (40.632,116.926,104.197)
N3: (41.814,119.023,104.301)
N6: (41.071,115.130,105.563)
N7: (43.262,116.924,106.806)
N9: (43.530,119.010,106.017)
O5': (48.050,120.371,104.914)
O3': (44.354,123.200,105.797)
OP1: (45.052,124.543,103.823)
OP2: (46.124,124.989,106.129)
C3': (40.946,125.546,106.418)
C1': (40.802,127.763,105.659)
C5': (43.397,125.837,107.062)
O6: (41.390,128.007,99.690)
O4': (41.968,127.662,106.450)
C8: (42.525,127.837,103.809)
C2: (38.604,127.843,101.906)
C6: (40.774,127.949,100.768)
C5: (41.299,127.897,102.077)
C4: (40.430,127.831,103.143)
P: (44.939,124.618,105.312)
C4': (41.994,126.384,107.126)
C2': (39.910,126.581,106.033)
O2': (39.128,126.929,107.147)
N1: (39.384,127.920,100.778)
N2: (37.285,127.797,101.712)
N3: (39.083,127.803,103.130)
N7: (42.614,127.898,102.512)
N9: (41.230,127.802,104.262)
O5': (43.782,125.640,105.690)
O3': (40.399,124.570,107.288)
OP2: (46.124,124.989,106.129)
C3': (40.946,125.546,106.418)
C1': (40.802,127.763,105.659)
C5': (43.397,125.837,107.062)
O6: (41.390,128.007,99.690)
O4': (41.968,127.662,106.450)
C8: (42.525,127.837,103.809)
C2: (38.604,127.843,101.906)
C6: (40.774,127.949,100.768)
C5: (41.299,127.897,102.077)
C4: (40.430,127.831,103.143)
P: (44.939,124.618,105.312)
C4': (41.994,126.384,107.126)
C2': (39.910,126.581,106.033)
O2': (39.128,126.929,107.147)
N1: (39.384,127.920,100.778)
N2: (37.285,127.797,101.712)
N3: (39.083,127.803,103.130)
N7: (42.614,127.898,102.512)
N9: (41.230,127.802,104.262)
O5': (43.782,125.640,105.690)
O3': (40.399,124.570,107.288)
Image (generated by PyMOL):