Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0253:0235
Extra
PDB:
ATOM 1 O3' G A 252 91.447 119.844 3.430 1.00 49.35 O
ATOM 2 P U A 253 90.134 119.608 4.318 1.00 48.29 P
ATOM 3 OP1 U A 253 90.447 120.145 5.662 1.00 49.65 O
ATOM 4 OP2 U A 253 89.725 118.190 4.174 1.00 47.68 O
ATOM 5 O5' U A 253 89.028 120.531 3.638 1.00 47.80 O
ATOM 6 C5' U A 253 88.862 121.909 4.030 1.00 47.84 C
ATOM 7 C4' U A 253 88.451 122.739 2.839 1.00 48.93 C
ATOM 8 O4' U A 253 89.578 122.914 1.937 1.00 48.92 O
ATOM 9 C3' U A 253 87.379 122.093 1.983 1.00 49.06 C
ATOM 10 O3' U A 253 86.085 122.324 2.515 1.00 49.29 O
ATOM 11 C2' U A 253 87.599 122.747 0.626 1.00 48.38 C
ATOM 12 O2' U A 253 87.014 124.033 0.531 1.00 48.43 O
ATOM 13 C1' U A 253 89.128 122.854 0.593 1.00 47.35 C
ATOM 14 N1 U A 253 89.777 121.704 -0.055 1.00 47.48 N
ATOM 15 C2 U A 253 89.588 121.533 -1.419 1.00 47.53 C
ATOM 16 O2 U A 253 88.927 122.300 -2.104 1.00 50.16 O
ATOM 17 N3 U A 253 90.201 120.429 -1.953 1.00 46.20 N
ATOM 18 C4 U A 253 90.964 119.498 -1.287 1.00 47.54 C
ATOM 19 O4 U A 253 91.378 118.512 -1.898 1.00 48.23 O
ATOM 20 C5 U A 253 91.129 119.751 0.114 1.00 47.37 C
ATOM 21 C6 U A 253 90.546 120.816 0.667 1.00 46.14 C
ATOM 22 P G A 254 85.009 121.139 2.514 1.00 49.99 P
ATOM 23 OP1 G A 254 83.710 121.733 2.925 1.00 49.11 O
ATOM 24 OP2 G A 254 85.579 119.990 3.275 1.00 48.44 O
ATOM 25 O5' G A 254 84.894 120.711 0.983 1.00 51.32 O
TER
ATOM 1 O3' G B 234 94.001 118.193 -7.803 1.00 61.34 O
ATOM 2 P A B 235 94.568 119.207 -8.909 1.00 60.10 P
ATOM 3 OP1 A B 235 94.128 118.691 -10.230 1.00 61.24 O
ATOM 4 OP2 A B 235 96.020 119.406 -8.643 1.00 58.40 O
ATOM 5 O5' A B 235 93.781 120.558 -8.621 1.00 58.09 O
ATOM 6 C5' A B 235 92.398 120.698 -9.002 1.00 59.12 C
ATOM 7 C4' A B 235 91.774 121.849 -8.254 1.00 59.68 C
ATOM 8 O4' A B 235 91.660 121.500 -6.844 1.00 59.65 O
ATOM 9 C3' A B 235 92.581 123.143 -8.299 1.00 58.85 C
ATOM 10 O3' A B 235 91.692 124.245 -8.193 1.00 59.72 O
ATOM 11 C2' A B 235 93.407 123.044 -7.023 1.00 58.49 C
ATOM 12 O2' A B 235 93.876 124.286 -6.547 1.00 57.25 O
ATOM 13 C1' A B 235 92.380 122.436 -6.070 1.00 59.07 C
ATOM 14 N9 A B 235 92.947 121.752 -4.910 1.00 59.17 N
ATOM 15 C8 A B 235 93.690 120.597 -4.871 1.00 59.70 C
ATOM 16 N7 A B 235 94.071 120.255 -3.665 1.00 58.53 N
ATOM 17 C5 A B 235 93.536 121.248 -2.854 1.00 57.77 C
ATOM 18 C6 A B 235 93.588 121.465 -1.472 1.00 55.94 C
ATOM 19 N6 A B 235 94.231 120.668 -0.622 1.00 55.44 N
ATOM 20 N1 A B 235 92.951 122.547 -0.984 1.00 56.28 N
ATOM 21 C2 A B 235 92.310 123.353 -1.835 1.00 57.67 C
ATOM 22 N3 A B 235 92.191 123.258 -3.153 1.00 58.57 N
ATOM 23 C4 A B 235 92.836 122.171 -3.607 1.00 58.29 C
ATOM 24 P A B 236 91.150 124.961 -9.520 1.00 61.43 P
ATOM 25 OP1 A B 236 92.215 124.834 -10.550 1.00 61.63 O
ATOM 26 OP2 A B 236 90.656 126.307 -9.127 1.00 60.13 O
ATOM 27 O5' A B 236 89.894 124.084 -9.968 1.00 59.69 O
TER
ATOM 2 P U A 253 90.134 119.608 4.318 1.00 48.29 P
ATOM 3 OP1 U A 253 90.447 120.145 5.662 1.00 49.65 O
ATOM 4 OP2 U A 253 89.725 118.190 4.174 1.00 47.68 O
ATOM 5 O5' U A 253 89.028 120.531 3.638 1.00 47.80 O
ATOM 6 C5' U A 253 88.862 121.909 4.030 1.00 47.84 C
ATOM 7 C4' U A 253 88.451 122.739 2.839 1.00 48.93 C
ATOM 8 O4' U A 253 89.578 122.914 1.937 1.00 48.92 O
ATOM 9 C3' U A 253 87.379 122.093 1.983 1.00 49.06 C
ATOM 10 O3' U A 253 86.085 122.324 2.515 1.00 49.29 O
ATOM 11 C2' U A 253 87.599 122.747 0.626 1.00 48.38 C
ATOM 12 O2' U A 253 87.014 124.033 0.531 1.00 48.43 O
ATOM 13 C1' U A 253 89.128 122.854 0.593 1.00 47.35 C
ATOM 14 N1 U A 253 89.777 121.704 -0.055 1.00 47.48 N
ATOM 15 C2 U A 253 89.588 121.533 -1.419 1.00 47.53 C
ATOM 16 O2 U A 253 88.927 122.300 -2.104 1.00 50.16 O
ATOM 17 N3 U A 253 90.201 120.429 -1.953 1.00 46.20 N
ATOM 18 C4 U A 253 90.964 119.498 -1.287 1.00 47.54 C
ATOM 19 O4 U A 253 91.378 118.512 -1.898 1.00 48.23 O
ATOM 20 C5 U A 253 91.129 119.751 0.114 1.00 47.37 C
ATOM 21 C6 U A 253 90.546 120.816 0.667 1.00 46.14 C
ATOM 22 P G A 254 85.009 121.139 2.514 1.00 49.99 P
ATOM 23 OP1 G A 254 83.710 121.733 2.925 1.00 49.11 O
ATOM 24 OP2 G A 254 85.579 119.990 3.275 1.00 48.44 O
ATOM 25 O5' G A 254 84.894 120.711 0.983 1.00 51.32 O
TER
ATOM 1 O3' G B 234 94.001 118.193 -7.803 1.00 61.34 O
ATOM 2 P A B 235 94.568 119.207 -8.909 1.00 60.10 P
ATOM 3 OP1 A B 235 94.128 118.691 -10.230 1.00 61.24 O
ATOM 4 OP2 A B 235 96.020 119.406 -8.643 1.00 58.40 O
ATOM 5 O5' A B 235 93.781 120.558 -8.621 1.00 58.09 O
ATOM 6 C5' A B 235 92.398 120.698 -9.002 1.00 59.12 C
ATOM 7 C4' A B 235 91.774 121.849 -8.254 1.00 59.68 C
ATOM 8 O4' A B 235 91.660 121.500 -6.844 1.00 59.65 O
ATOM 9 C3' A B 235 92.581 123.143 -8.299 1.00 58.85 C
ATOM 10 O3' A B 235 91.692 124.245 -8.193 1.00 59.72 O
ATOM 11 C2' A B 235 93.407 123.044 -7.023 1.00 58.49 C
ATOM 12 O2' A B 235 93.876 124.286 -6.547 1.00 57.25 O
ATOM 13 C1' A B 235 92.380 122.436 -6.070 1.00 59.07 C
ATOM 14 N9 A B 235 92.947 121.752 -4.910 1.00 59.17 N
ATOM 15 C8 A B 235 93.690 120.597 -4.871 1.00 59.70 C
ATOM 16 N7 A B 235 94.071 120.255 -3.665 1.00 58.53 N
ATOM 17 C5 A B 235 93.536 121.248 -2.854 1.00 57.77 C
ATOM 18 C6 A B 235 93.588 121.465 -1.472 1.00 55.94 C
ATOM 19 N6 A B 235 94.231 120.668 -0.622 1.00 55.44 N
ATOM 20 N1 A B 235 92.951 122.547 -0.984 1.00 56.28 N
ATOM 21 C2 A B 235 92.310 123.353 -1.835 1.00 57.67 C
ATOM 22 N3 A B 235 92.191 123.258 -3.153 1.00 58.57 N
ATOM 23 C4 A B 235 92.836 122.171 -3.607 1.00 58.29 C
ATOM 24 P A B 236 91.150 124.961 -9.520 1.00 61.43 P
ATOM 25 OP1 A B 236 92.215 124.834 -10.550 1.00 61.63 O
ATOM 26 OP2 A B 236 90.656 126.307 -9.127 1.00 60.13 O
ATOM 27 O5' A B 236 89.894 124.084 -9.968 1.00 59.69 O
TER
Atoms:
C4: (90.964,119.498,-1.287)
N3: (90.201,120.429,-1.953)
OP1: (90.447,120.145,5.662)
OP2: (89.725,118.190,4.174)
C2: (89.588,121.533,-1.419)
C1': (89.128,122.854,0.593)
C3': (87.379,122.093,1.983)
O5': (89.028,120.531,3.638)
O4': (89.578,122.914,1.937)
C5': (88.862,121.909,4.030)
P: (90.134,119.608,4.318)
C4': (88.451,122.739,2.839)
C2': (87.599,122.747,0.626)
O2': (87.014,124.033,0.531)
N1: (89.777,121.704,-0.055)
O4: (91.378,118.512,-1.898)
O2: (88.927,122.300,-2.104)
C6: (90.546,120.816,0.667)
C5: (91.129,119.751,0.114)
O3': (86.085,122.324,2.515)
N3: (90.201,120.429,-1.953)
OP1: (90.447,120.145,5.662)
OP2: (89.725,118.190,4.174)
C2: (89.588,121.533,-1.419)
C1': (89.128,122.854,0.593)
C3': (87.379,122.093,1.983)
O5': (89.028,120.531,3.638)
O4': (89.578,122.914,1.937)
C5': (88.862,121.909,4.030)
P: (90.134,119.608,4.318)
C4': (88.451,122.739,2.839)
C2': (87.599,122.747,0.626)
O2': (87.014,124.033,0.531)
N1: (89.777,121.704,-0.055)
O4: (91.378,118.512,-1.898)
O2: (88.927,122.300,-2.104)
C6: (90.546,120.816,0.667)
C5: (91.129,119.751,0.114)
O3': (86.085,122.324,2.515)
OP1: (94.128,118.691,-10.230)
OP2: (96.020,119.406,-8.643)
C3': (92.581,123.143,-8.299)
C1': (92.380,122.436,-6.070)
C5': (92.398,120.698,-9.002)
O4': (91.660,121.500,-6.844)
C8: (93.690,120.597,-4.871)
O2': (93.876,124.286,-6.547)
C6: (93.588,121.465,-1.472)
C5: (93.536,121.248,-2.854)
C4: (92.836,122.171,-3.607)
P: (94.568,119.207,-8.909)
C4': (91.774,121.849,-8.254)
C2': (93.407,123.044,-7.023)
C2: (92.310,123.353,-1.835)
N1: (92.951,122.547,-0.984)
N3: (92.191,123.258,-3.153)
N6: (94.231,120.668,-0.622)
N7: (94.071,120.255,-3.665)
N9: (92.947,121.752,-4.910)
O5': (93.781,120.558,-8.621)
O3': (91.692,124.245,-8.193)
OP2: (96.020,119.406,-8.643)
C3': (92.581,123.143,-8.299)
C1': (92.380,122.436,-6.070)
C5': (92.398,120.698,-9.002)
O4': (91.660,121.500,-6.844)
C8: (93.690,120.597,-4.871)
O2': (93.876,124.286,-6.547)
C6: (93.588,121.465,-1.472)
C5: (93.536,121.248,-2.854)
C4: (92.836,122.171,-3.607)
P: (94.568,119.207,-8.909)
C4': (91.774,121.849,-8.254)
C2': (93.407,123.044,-7.023)
C2: (92.310,123.353,-1.835)
N1: (92.951,122.547,-0.984)
N3: (92.191,123.258,-3.153)
N6: (94.231,120.668,-0.622)
N7: (94.071,120.255,-3.665)
N9: (92.947,121.752,-4.910)
O5': (93.781,120.558,-8.621)
O3': (91.692,124.245,-8.193)
Image (generated by PyMOL):