Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YRJ:A1:B15
Extra
PDB:
ATOM 1 P U A 1 50.116 10.565 -1.035 1.00 48.55 P
ATOM 2 OP1 U A 1 51.355 11.116 -0.430 1.00 45.79 O
ATOM 3 OP2 U A 1 49.914 9.095 -1.073 1.00 50.71 O
ATOM 4 O5' U A 1 48.816 11.177 -0.312 1.00 46.76 O
ATOM 5 C5' U A 1 47.471 10.829 -0.717 1.00 45.04 C
ATOM 6 C4' U A 1 46.521 10.744 0.490 1.00 45.41 C
ATOM 7 O4' U A 1 46.679 9.453 1.115 1.00 45.00 O
ATOM 8 C3' U A 1 46.706 11.780 1.596 1.00 45.71 C
ATOM 9 O3' U A 1 45.876 12.963 1.519 1.00 46.49 O
ATOM 10 C2' U A 1 46.336 11.036 2.880 1.00 45.82 C
ATOM 11 O2' U A 1 45.003 11.239 3.298 1.00 52.04 O
ATOM 12 C1' U A 1 46.525 9.568 2.506 1.00 45.28 C
ATOM 13 N1 U A 1 47.660 8.899 3.140 1.00 46.66 N
ATOM 14 C2 U A 1 47.528 8.499 4.452 1.00 47.33 C
ATOM 15 O2 U A 1 46.521 8.688 5.119 1.00 48.28 O
ATOM 16 N3 U A 1 48.621 7.850 4.963 1.00 49.15 N
ATOM 17 C4 U A 1 49.796 7.559 4.309 1.00 49.34 C
ATOM 18 O4 U A 1 50.661 6.897 4.891 1.00 52.00 O
ATOM 19 C5 U A 1 49.853 8.015 2.957 1.00 47.22 C
ATOM 20 C6 U A 1 48.810 8.661 2.437 1.00 46.52 C
ATOM 21 P G A 2 44.424 12.948 0.772 1.00 49.39 P
ATOM 22 OP1 G A 2 43.625 11.769 1.213 1.00 45.99 O
ATOM 23 OP2 G A 2 44.634 13.193 -0.684 1.00 47.25 O
ATOM 24 O5' G A 2 43.710 14.224 1.392 1.00 38.64 O
TER
ATOM 1 O3' G B 14 46.188 4.895 10.440 1.00 18.25 O
ATOM 2 P A B 15 45.663 5.729 9.195 1.00 19.93 P
ATOM 3 OP1 A B 15 46.823 5.928 8.290 1.00 22.10 O
ATOM 4 OP2 A B 15 44.901 6.894 9.673 1.00 20.55 O
ATOM 5 O5' A B 15 44.725 4.729 8.379 1.00 21.80 O
ATOM 6 C5' A B 15 43.436 5.123 7.985 1.00 24.35 C
ATOM 7 C4' A B 15 43.373 5.512 6.515 1.00 27.96 C
ATOM 8 O4' A B 15 44.567 6.212 6.057 1.00 29.11 O
ATOM 9 C3' A B 15 43.181 4.434 5.466 1.00 27.17 C
ATOM 10 O3' A B 15 41.826 3.979 5.478 1.00 24.59 O
ATOM 11 C2' A B 15 43.462 5.242 4.201 1.00 28.42 C
ATOM 12 O2' A B 15 42.426 6.165 3.955 1.00 30.45 O
ATOM 13 C1' A B 15 44.644 6.094 4.645 1.00 31.44 C
ATOM 14 N9 A B 15 45.931 5.510 4.269 1.00 34.65 N
ATOM 15 C8 A B 15 46.884 4.949 5.071 1.00 33.61 C
ATOM 16 N7 A B 15 47.951 4.557 4.422 1.00 35.66 N
ATOM 17 C5 A B 15 47.677 4.876 3.101 1.00 38.22 C
ATOM 18 C6 A B 15 48.426 4.734 1.910 1.00 40.19 C
ATOM 19 N6 A B 15 49.636 4.167 1.867 1.00 42.02 N
ATOM 20 N1 A B 15 47.875 5.188 0.756 1.00 39.07 N
ATOM 21 C2 A B 15 46.654 5.711 0.800 1.00 38.51 C
ATOM 22 N3 A B 15 45.845 5.880 1.852 1.00 40.49 N
ATOM 23 C4 A B 15 46.430 5.445 2.988 1.00 37.54 C
ATOM 24 P A B 16 41.483 2.479 5.032 1.00 20.03 P
ATOM 25 OP1 A B 16 40.869 1.855 6.180 1.00 24.96 O
ATOM 26 OP2 A B 16 42.649 1.843 4.407 1.00 29.31 O
ATOM 27 O5' A B 16 40.369 2.619 3.899 1.00 27.93 O
TER
ATOM 2 OP1 U A 1 51.355 11.116 -0.430 1.00 45.79 O
ATOM 3 OP2 U A 1 49.914 9.095 -1.073 1.00 50.71 O
ATOM 4 O5' U A 1 48.816 11.177 -0.312 1.00 46.76 O
ATOM 5 C5' U A 1 47.471 10.829 -0.717 1.00 45.04 C
ATOM 6 C4' U A 1 46.521 10.744 0.490 1.00 45.41 C
ATOM 7 O4' U A 1 46.679 9.453 1.115 1.00 45.00 O
ATOM 8 C3' U A 1 46.706 11.780 1.596 1.00 45.71 C
ATOM 9 O3' U A 1 45.876 12.963 1.519 1.00 46.49 O
ATOM 10 C2' U A 1 46.336 11.036 2.880 1.00 45.82 C
ATOM 11 O2' U A 1 45.003 11.239 3.298 1.00 52.04 O
ATOM 12 C1' U A 1 46.525 9.568 2.506 1.00 45.28 C
ATOM 13 N1 U A 1 47.660 8.899 3.140 1.00 46.66 N
ATOM 14 C2 U A 1 47.528 8.499 4.452 1.00 47.33 C
ATOM 15 O2 U A 1 46.521 8.688 5.119 1.00 48.28 O
ATOM 16 N3 U A 1 48.621 7.850 4.963 1.00 49.15 N
ATOM 17 C4 U A 1 49.796 7.559 4.309 1.00 49.34 C
ATOM 18 O4 U A 1 50.661 6.897 4.891 1.00 52.00 O
ATOM 19 C5 U A 1 49.853 8.015 2.957 1.00 47.22 C
ATOM 20 C6 U A 1 48.810 8.661 2.437 1.00 46.52 C
ATOM 21 P G A 2 44.424 12.948 0.772 1.00 49.39 P
ATOM 22 OP1 G A 2 43.625 11.769 1.213 1.00 45.99 O
ATOM 23 OP2 G A 2 44.634 13.193 -0.684 1.00 47.25 O
ATOM 24 O5' G A 2 43.710 14.224 1.392 1.00 38.64 O
TER
ATOM 1 O3' G B 14 46.188 4.895 10.440 1.00 18.25 O
ATOM 2 P A B 15 45.663 5.729 9.195 1.00 19.93 P
ATOM 3 OP1 A B 15 46.823 5.928 8.290 1.00 22.10 O
ATOM 4 OP2 A B 15 44.901 6.894 9.673 1.00 20.55 O
ATOM 5 O5' A B 15 44.725 4.729 8.379 1.00 21.80 O
ATOM 6 C5' A B 15 43.436 5.123 7.985 1.00 24.35 C
ATOM 7 C4' A B 15 43.373 5.512 6.515 1.00 27.96 C
ATOM 8 O4' A B 15 44.567 6.212 6.057 1.00 29.11 O
ATOM 9 C3' A B 15 43.181 4.434 5.466 1.00 27.17 C
ATOM 10 O3' A B 15 41.826 3.979 5.478 1.00 24.59 O
ATOM 11 C2' A B 15 43.462 5.242 4.201 1.00 28.42 C
ATOM 12 O2' A B 15 42.426 6.165 3.955 1.00 30.45 O
ATOM 13 C1' A B 15 44.644 6.094 4.645 1.00 31.44 C
ATOM 14 N9 A B 15 45.931 5.510 4.269 1.00 34.65 N
ATOM 15 C8 A B 15 46.884 4.949 5.071 1.00 33.61 C
ATOM 16 N7 A B 15 47.951 4.557 4.422 1.00 35.66 N
ATOM 17 C5 A B 15 47.677 4.876 3.101 1.00 38.22 C
ATOM 18 C6 A B 15 48.426 4.734 1.910 1.00 40.19 C
ATOM 19 N6 A B 15 49.636 4.167 1.867 1.00 42.02 N
ATOM 20 N1 A B 15 47.875 5.188 0.756 1.00 39.07 N
ATOM 21 C2 A B 15 46.654 5.711 0.800 1.00 38.51 C
ATOM 22 N3 A B 15 45.845 5.880 1.852 1.00 40.49 N
ATOM 23 C4 A B 15 46.430 5.445 2.988 1.00 37.54 C
ATOM 24 P A B 16 41.483 2.479 5.032 1.00 20.03 P
ATOM 25 OP1 A B 16 40.869 1.855 6.180 1.00 24.96 O
ATOM 26 OP2 A B 16 42.649 1.843 4.407 1.00 29.31 O
ATOM 27 O5' A B 16 40.369 2.619 3.899 1.00 27.93 O
TER
Atoms:
C4: (49.796,7.559,4.309)
N3: (48.621,7.850,4.963)
OP1: (51.355,11.116,-0.430)
OP2: (49.914,9.095,-1.073)
C2: (47.528,8.499,4.452)
C1': (46.525,9.568,2.506)
C3': (46.706,11.780,1.596)
O5': (48.816,11.177,-0.312)
O4': (46.679,9.453,1.115)
C5': (47.471,10.829,-0.717)
P: (50.116,10.565,-1.035)
C4': (46.521,10.744,0.490)
C2': (46.336,11.036,2.880)
O2': (45.003,11.239,3.298)
N1: (47.660,8.899,3.140)
O4: (50.661,6.897,4.891)
O2: (46.521,8.688,5.119)
C6: (48.810,8.661,2.437)
C5: (49.853,8.015,2.957)
O3': (45.876,12.963,1.519)
N3: (48.621,7.850,4.963)
OP1: (51.355,11.116,-0.430)
OP2: (49.914,9.095,-1.073)
C2: (47.528,8.499,4.452)
C1': (46.525,9.568,2.506)
C3': (46.706,11.780,1.596)
O5': (48.816,11.177,-0.312)
O4': (46.679,9.453,1.115)
C5': (47.471,10.829,-0.717)
P: (50.116,10.565,-1.035)
C4': (46.521,10.744,0.490)
C2': (46.336,11.036,2.880)
O2': (45.003,11.239,3.298)
N1: (47.660,8.899,3.140)
O4: (50.661,6.897,4.891)
O2: (46.521,8.688,5.119)
C6: (48.810,8.661,2.437)
C5: (49.853,8.015,2.957)
O3': (45.876,12.963,1.519)
OP1: (46.823,5.928,8.290)
OP2: (44.901,6.894,9.673)
C3': (43.181,4.434,5.466)
C1': (44.644,6.094,4.645)
C5': (43.436,5.123,7.985)
O4': (44.567,6.212,6.057)
C8: (46.884,4.949,5.071)
O2': (42.426,6.165,3.955)
C6: (48.426,4.734,1.910)
C5: (47.677,4.876,3.101)
C4: (46.430,5.445,2.988)
P: (45.663,5.729,9.195)
C4': (43.373,5.512,6.515)
C2': (43.462,5.242,4.201)
C2: (46.654,5.711,0.800)
N1: (47.875,5.188,0.756)
N3: (45.845,5.880,1.852)
N6: (49.636,4.167,1.867)
N7: (47.951,4.557,4.422)
N9: (45.931,5.510,4.269)
O5': (44.725,4.729,8.379)
O3': (41.826,3.979,5.478)
OP2: (44.901,6.894,9.673)
C3': (43.181,4.434,5.466)
C1': (44.644,6.094,4.645)
C5': (43.436,5.123,7.985)
O4': (44.567,6.212,6.057)
C8: (46.884,4.949,5.071)
O2': (42.426,6.165,3.955)
C6: (48.426,4.734,1.910)
C5: (47.677,4.876,3.101)
C4: (46.430,5.445,2.988)
P: (45.663,5.729,9.195)
C4': (43.373,5.512,6.515)
C2': (43.462,5.242,4.201)
C2: (46.654,5.711,0.800)
N1: (47.875,5.188,0.756)
N3: (45.845,5.880,1.852)
N6: (49.636,4.167,1.867)
N7: (47.951,4.557,4.422)
N9: (45.931,5.510,4.269)
O5': (44.725,4.729,8.379)
O3': (41.826,3.979,5.478)
Image (generated by PyMOL):