Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A18:A21
Extra
PDB:
ATOM 1 O3' C A 17 -18.122 4.714 16.214 1.00 26.89 O
ATOM 2 P G A 18 -18.182 6.290 15.913 1.00 29.41 P
ATOM 3 OP1 G A 18 -19.255 6.860 16.766 1.00 32.36 O
ATOM 4 OP2 G A 18 -18.281 6.449 14.443 1.00 20.92 O
ATOM 5 O5' G A 18 -16.763 6.799 16.420 1.00 24.06 O
ATOM 6 C5' G A 18 -16.359 6.605 17.767 1.00 21.28 C
ATOM 7 C4' G A 18 -14.923 7.005 17.970 1.00 24.94 C
ATOM 8 O4' G A 18 -14.055 6.087 17.258 1.00 23.82 O
ATOM 9 C3' G A 18 -14.538 8.377 17.435 1.00 25.36 C
ATOM 10 O3' G A 18 -14.871 9.424 18.330 1.00 25.03 O
ATOM 11 C2' G A 18 -13.040 8.236 17.195 1.00 25.75 C
ATOM 12 O2' G A 18 -12.322 8.379 18.413 1.00 27.04 O
ATOM 13 C1' G A 18 -12.937 6.778 16.745 1.00 23.44 C
ATOM 14 N9 G A 18 -12.931 6.637 15.275 1.00 23.30 N
ATOM 15 C8 G A 18 -13.954 6.160 14.491 1.00 23.54 C
ATOM 16 N7 G A 18 -13.655 6.123 13.219 1.00 22.97 N
ATOM 17 C5 G A 18 -12.350 6.591 13.160 1.00 22.65 C
ATOM 18 C6 G A 18 -11.493 6.780 12.046 1.00 22.05 C
ATOM 19 O6 G A 18 -11.723 6.558 10.852 1.00 23.04 O
ATOM 20 N1 G A 18 -10.254 7.279 12.429 1.00 19.57 N
ATOM 21 C2 G A 18 -9.886 7.560 13.719 1.00 20.04 C
ATOM 22 N2 G A 18 -8.645 8.036 13.887 1.00 17.40 N
ATOM 23 N3 G A 18 -10.674 7.391 14.768 1.00 21.26 N
ATOM 24 C4 G A 18 -11.884 6.905 14.420 1.00 22.66 C
ATOM 25 P U A 19 -15.471 10.810 17.780 1.00 25.10 P
ATOM 26 OP1 U A 19 -15.930 11.578 18.959 1.00 34.70 O
ATOM 27 OP2 U A 19 -16.455 10.479 16.717 1.00 22.99 O
ATOM 28 O5' U A 19 -14.198 11.514 17.135 1.00 28.87 O
TER
ATOM 1 O3' U B 20 -14.265 15.115 21.846 1.00 40.06 O
ATOM 2 P A B 21 -12.930 14.819 22.687 1.00 50.78 P
ATOM 3 OP1 A B 21 -13.340 14.632 24.102 1.00 42.42 O
ATOM 4 OP2 A B 21 -11.959 15.895 22.363 1.00 39.84 O
ATOM 5 O5' A B 21 -12.428 13.434 22.080 1.00 45.12 O
ATOM 6 C5' A B 21 -13.274 12.288 22.083 1.00 38.16 C
ATOM 7 C4' A B 21 -12.480 11.004 22.118 1.00 32.73 C
ATOM 8 O4' A B 21 -11.736 10.859 20.873 1.00 30.90 O
ATOM 9 C3' A B 21 -11.448 10.898 23.244 1.00 31.97 C
ATOM 10 O3' A B 21 -11.376 9.541 23.678 1.00 35.89 O
ATOM 11 C2' A B 21 -10.150 11.266 22.529 1.00 31.77 C
ATOM 12 O2' A B 21 -8.977 10.788 23.151 1.00 34.75 O
ATOM 13 C1' A B 21 -10.380 10.611 21.175 1.00 30.07 C
ATOM 14 N9 A B 21 -9.541 11.135 20.093 1.00 32.57 N
ATOM 15 C8 A B 21 -8.828 12.308 20.030 1.00 31.56 C
ATOM 16 N7 A B 21 -8.150 12.454 18.914 1.00 31.30 N
ATOM 17 C5 A B 21 -8.422 11.294 18.198 1.00 30.65 C
ATOM 18 C6 A B 21 -8.010 10.826 16.933 1.00 27.64 C
ATOM 19 N6 A B 21 -7.195 11.492 16.113 1.00 30.60 N
ATOM 20 N1 A B 21 -8.472 9.627 16.522 1.00 24.46 N
ATOM 21 C2 A B 21 -9.288 8.946 17.332 1.00 26.49 C
ATOM 22 N3 A B 21 -9.744 9.275 18.538 1.00 29.11 N
ATOM 23 C4 A B 21 -9.269 10.472 18.919 1.00 30.53 C
ATOM 24 P A B 22 -10.937 9.184 25.182 1.00 40.07 P
ATOM 25 OP1 A B 22 -11.699 10.080 26.084 1.00 27.32 O
ATOM 26 OP2 A B 22 -9.453 9.218 25.226 1.00 34.26 O
ATOM 27 O5' A B 22 -11.448 7.683 25.347 1.00 33.18 O
TER
ATOM 2 P G A 18 -18.182 6.290 15.913 1.00 29.41 P
ATOM 3 OP1 G A 18 -19.255 6.860 16.766 1.00 32.36 O
ATOM 4 OP2 G A 18 -18.281 6.449 14.443 1.00 20.92 O
ATOM 5 O5' G A 18 -16.763 6.799 16.420 1.00 24.06 O
ATOM 6 C5' G A 18 -16.359 6.605 17.767 1.00 21.28 C
ATOM 7 C4' G A 18 -14.923 7.005 17.970 1.00 24.94 C
ATOM 8 O4' G A 18 -14.055 6.087 17.258 1.00 23.82 O
ATOM 9 C3' G A 18 -14.538 8.377 17.435 1.00 25.36 C
ATOM 10 O3' G A 18 -14.871 9.424 18.330 1.00 25.03 O
ATOM 11 C2' G A 18 -13.040 8.236 17.195 1.00 25.75 C
ATOM 12 O2' G A 18 -12.322 8.379 18.413 1.00 27.04 O
ATOM 13 C1' G A 18 -12.937 6.778 16.745 1.00 23.44 C
ATOM 14 N9 G A 18 -12.931 6.637 15.275 1.00 23.30 N
ATOM 15 C8 G A 18 -13.954 6.160 14.491 1.00 23.54 C
ATOM 16 N7 G A 18 -13.655 6.123 13.219 1.00 22.97 N
ATOM 17 C5 G A 18 -12.350 6.591 13.160 1.00 22.65 C
ATOM 18 C6 G A 18 -11.493 6.780 12.046 1.00 22.05 C
ATOM 19 O6 G A 18 -11.723 6.558 10.852 1.00 23.04 O
ATOM 20 N1 G A 18 -10.254 7.279 12.429 1.00 19.57 N
ATOM 21 C2 G A 18 -9.886 7.560 13.719 1.00 20.04 C
ATOM 22 N2 G A 18 -8.645 8.036 13.887 1.00 17.40 N
ATOM 23 N3 G A 18 -10.674 7.391 14.768 1.00 21.26 N
ATOM 24 C4 G A 18 -11.884 6.905 14.420 1.00 22.66 C
ATOM 25 P U A 19 -15.471 10.810 17.780 1.00 25.10 P
ATOM 26 OP1 U A 19 -15.930 11.578 18.959 1.00 34.70 O
ATOM 27 OP2 U A 19 -16.455 10.479 16.717 1.00 22.99 O
ATOM 28 O5' U A 19 -14.198 11.514 17.135 1.00 28.87 O
TER
ATOM 1 O3' U B 20 -14.265 15.115 21.846 1.00 40.06 O
ATOM 2 P A B 21 -12.930 14.819 22.687 1.00 50.78 P
ATOM 3 OP1 A B 21 -13.340 14.632 24.102 1.00 42.42 O
ATOM 4 OP2 A B 21 -11.959 15.895 22.363 1.00 39.84 O
ATOM 5 O5' A B 21 -12.428 13.434 22.080 1.00 45.12 O
ATOM 6 C5' A B 21 -13.274 12.288 22.083 1.00 38.16 C
ATOM 7 C4' A B 21 -12.480 11.004 22.118 1.00 32.73 C
ATOM 8 O4' A B 21 -11.736 10.859 20.873 1.00 30.90 O
ATOM 9 C3' A B 21 -11.448 10.898 23.244 1.00 31.97 C
ATOM 10 O3' A B 21 -11.376 9.541 23.678 1.00 35.89 O
ATOM 11 C2' A B 21 -10.150 11.266 22.529 1.00 31.77 C
ATOM 12 O2' A B 21 -8.977 10.788 23.151 1.00 34.75 O
ATOM 13 C1' A B 21 -10.380 10.611 21.175 1.00 30.07 C
ATOM 14 N9 A B 21 -9.541 11.135 20.093 1.00 32.57 N
ATOM 15 C8 A B 21 -8.828 12.308 20.030 1.00 31.56 C
ATOM 16 N7 A B 21 -8.150 12.454 18.914 1.00 31.30 N
ATOM 17 C5 A B 21 -8.422 11.294 18.198 1.00 30.65 C
ATOM 18 C6 A B 21 -8.010 10.826 16.933 1.00 27.64 C
ATOM 19 N6 A B 21 -7.195 11.492 16.113 1.00 30.60 N
ATOM 20 N1 A B 21 -8.472 9.627 16.522 1.00 24.46 N
ATOM 21 C2 A B 21 -9.288 8.946 17.332 1.00 26.49 C
ATOM 22 N3 A B 21 -9.744 9.275 18.538 1.00 29.11 N
ATOM 23 C4 A B 21 -9.269 10.472 18.919 1.00 30.53 C
ATOM 24 P A B 22 -10.937 9.184 25.182 1.00 40.07 P
ATOM 25 OP1 A B 22 -11.699 10.080 26.084 1.00 27.32 O
ATOM 26 OP2 A B 22 -9.453 9.218 25.226 1.00 34.26 O
ATOM 27 O5' A B 22 -11.448 7.683 25.347 1.00 33.18 O
TER
Atoms:
OP1: (-19.255,6.860,16.766)
OP2: (-18.281,6.449,14.443)
C3': (-14.538,8.377,17.435)
C1': (-12.937,6.778,16.745)
C5': (-16.359,6.605,17.767)
O6: (-11.723,6.558,10.852)
O4': (-14.055,6.087,17.258)
C8: (-13.954,6.160,14.491)
C2: (-9.886,7.560,13.719)
C6: (-11.493,6.780,12.046)
C5: (-12.350,6.591,13.160)
C4: (-11.884,6.905,14.420)
P: (-18.182,6.290,15.913)
C4': (-14.923,7.005,17.970)
C2': (-13.040,8.236,17.195)
O2': (-12.322,8.379,18.413)
N1: (-10.254,7.279,12.429)
N2: (-8.645,8.036,13.887)
N3: (-10.674,7.391,14.768)
N7: (-13.655,6.123,13.219)
N9: (-12.931,6.637,15.275)
O5': (-16.763,6.799,16.420)
O3': (-14.871,9.424,18.330)
OP2: (-18.281,6.449,14.443)
C3': (-14.538,8.377,17.435)
C1': (-12.937,6.778,16.745)
C5': (-16.359,6.605,17.767)
O6: (-11.723,6.558,10.852)
O4': (-14.055,6.087,17.258)
C8: (-13.954,6.160,14.491)
C2: (-9.886,7.560,13.719)
C6: (-11.493,6.780,12.046)
C5: (-12.350,6.591,13.160)
C4: (-11.884,6.905,14.420)
P: (-18.182,6.290,15.913)
C4': (-14.923,7.005,17.970)
C2': (-13.040,8.236,17.195)
O2': (-12.322,8.379,18.413)
N1: (-10.254,7.279,12.429)
N2: (-8.645,8.036,13.887)
N3: (-10.674,7.391,14.768)
N7: (-13.655,6.123,13.219)
N9: (-12.931,6.637,15.275)
O5': (-16.763,6.799,16.420)
O3': (-14.871,9.424,18.330)
OP1: (-13.340,14.632,24.102)
OP2: (-11.959,15.895,22.363)
C3': (-11.448,10.898,23.244)
C1': (-10.380,10.611,21.175)
C5': (-13.274,12.288,22.083)
O4': (-11.736,10.859,20.873)
C8: (-8.828,12.308,20.030)
O2': (-8.977,10.788,23.151)
C6: (-8.010,10.826,16.933)
C5: (-8.422,11.294,18.198)
C4: (-9.269,10.472,18.919)
P: (-12.930,14.819,22.687)
C4': (-12.480,11.004,22.118)
C2': (-10.150,11.266,22.529)
C2: (-9.288,8.946,17.332)
N1: (-8.472,9.627,16.522)
N3: (-9.744,9.275,18.538)
N6: (-7.195,11.492,16.113)
N7: (-8.150,12.454,18.914)
N9: (-9.541,11.135,20.093)
O5': (-12.428,13.434,22.080)
O3': (-11.376,9.541,23.678)
OP2: (-11.959,15.895,22.363)
C3': (-11.448,10.898,23.244)
C1': (-10.380,10.611,21.175)
C5': (-13.274,12.288,22.083)
O4': (-11.736,10.859,20.873)
C8: (-8.828,12.308,20.030)
O2': (-8.977,10.788,23.151)
C6: (-8.010,10.826,16.933)
C5: (-8.422,11.294,18.198)
C4: (-9.269,10.472,18.919)
P: (-12.930,14.819,22.687)
C4': (-12.480,11.004,22.118)
C2': (-10.150,11.266,22.529)
C2: (-9.288,8.946,17.332)
N1: (-8.472,9.627,16.522)
N3: (-9.744,9.275,18.538)
N6: (-7.195,11.492,16.113)
N7: (-8.150,12.454,18.914)
N9: (-9.541,11.135,20.093)
O5': (-12.428,13.434,22.080)
O3': (-11.376,9.541,23.678)
Image (generated by PyMOL):