ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIT:0197:0653

Extra

PDB:
ATOM 1 O3' C A 196 52.950 104.905 33.905 1.00 35.34 O
ATOM 2 P G A 197 53.259 103.802 35.034 1.00 38.26 P
ATOM 3 OP1 G A 197 52.597 104.285 36.274 1.00 32.89 O
ATOM 4 OP2 G A 197 54.720 103.494 35.048 1.00 34.56 O
ATOM 5 O5' G A 197 52.505 102.495 34.504 1.00 38.71 O
ATOM 6 C5' G A 197 51.063 102.451 34.424 1.00 38.49 C
ATOM 7 C4' G A 197 50.595 101.162 33.782 1.00 38.50 C
ATOM 8 O4' G A 197 51.043 101.109 32.401 1.00 39.39 O
ATOM 9 C3' G A 197 51.117 99.857 34.364 1.00 38.05 C
ATOM 10 O3' G A 197 50.456 99.437 35.545 1.00 37.03 O
ATOM 11 C2' G A 197 50.861 98.893 33.222 1.00 37.15 C
ATOM 12 O2' G A 197 49.497 98.548 33.115 1.00 38.09 O
ATOM 13 C1' G A 197 51.258 99.756 32.029 1.00 37.31 C
ATOM 14 N9 G A 197 52.668 99.568 31.702 1.00 36.32 N
ATOM 15 C8 G A 197 53.731 100.367 32.040 1.00 35.21 C
ATOM 16 N7 G A 197 54.870 99.918 31.590 1.00 35.94 N
ATOM 17 C5 G A 197 54.537 98.755 30.912 1.00 36.94 C
ATOM 18 C6 G A 197 55.350 97.834 30.202 1.00 38.75 C
ATOM 19 O6 G A 197 56.572 97.867 30.007 1.00 38.06 O
ATOM 20 N1 G A 197 54.595 96.786 29.684 1.00 40.29 N
ATOM 21 C2 G A 197 53.237 96.646 29.822 1.00 40.24 C
ATOM 22 N2 G A 197 52.687 95.566 29.263 1.00 41.24 N
ATOM 23 N3 G A 197 52.473 97.501 30.463 1.00 39.04 N
ATOM 24 C4 G A 197 53.183 98.524 30.981 1.00 37.49 C
ATOM 25 P U A 198 51.316 98.790 36.736 1.00 37.36 P
ATOM 26 OP1 U A 198 50.361 98.546 37.833 1.00 37.77 O
ATOM 27 OP2 U A 198 52.493 99.650 36.974 1.00 41.21 O
ATOM 28 O5' U A 198 51.889 97.416 36.156 1.00 35.40 O
TER

ATOM 1 O3' U B 652 40.443 97.613 34.479 1.00 39.20 O
ATOM 2 P A B 653 40.981 99.003 33.882 1.00 38.78 P
ATOM 3 OP1 A B 653 40.696 100.046 34.894 1.00 39.09 O
ATOM 4 OP2 A B 653 40.450 99.154 32.502 1.00 39.05 O
ATOM 5 O5' A B 653 42.560 98.792 33.798 1.00 36.99 O
ATOM 6 C5' A B 653 43.354 98.768 34.994 1.00 36.40 C
ATOM 7 C4' A B 653 44.818 98.942 34.669 1.00 37.76 C
ATOM 8 O4' A B 653 45.388 97.720 34.143 1.00 38.71 O
ATOM 9 C3' A B 653 45.162 99.991 33.631 1.00 37.03 C
ATOM 10 O3' A B 653 45.148 101.283 34.200 1.00 36.21 O
ATOM 11 C2' A B 653 46.556 99.568 33.200 1.00 37.52 C
ATOM 12 O2' A B 653 47.551 99.956 34.123 1.00 37.09 O
ATOM 13 C1' A B 653 46.425 98.044 33.230 1.00 39.37 C
ATOM 14 N9 A B 653 46.094 97.450 31.936 1.00 41.13 N
ATOM 15 C8 A B 653 44.864 97.037 31.489 1.00 40.79 C
ATOM 16 N7 A B 653 44.895 96.473 30.307 1.00 42.93 N
ATOM 17 C5 A B 653 46.234 96.530 29.945 1.00 42.78 C
ATOM 18 C6 A B 653 46.925 96.075 28.811 1.00 42.74 C
ATOM 19 N6 A B 653 46.343 95.422 27.808 1.00 42.22 N
ATOM 20 N1 A B 653 48.254 96.307 28.749 1.00 42.73 N
ATOM 21 C2 A B 653 48.840 96.938 29.774 1.00 42.23 C
ATOM 22 N3 A B 653 48.300 97.394 30.902 1.00 40.33 N
ATOM 23 C4 A B 653 46.979 97.154 30.927 1.00 41.51 C
ATOM 24 P A B 654 44.569 102.510 33.356 1.00 38.69 P
ATOM 25 OP1 A B 654 44.412 103.635 34.308 1.00 36.30 O
ATOM 26 OP2 A B 654 43.394 102.039 32.582 1.00 38.49 O
ATOM 27 O5' A B 654 45.746 102.845 32.330 1.00 38.54 O
TER

Atoms:
OP1: (52.597,104.285,36.274)
OP2: (54.720,103.494,35.048)
C3': (51.117,99.857,34.364)
C1': (51.258,99.756,32.029)
C5': (51.063,102.451,34.424)
O6: (56.572,97.867,30.007)
O4': (51.043,101.109,32.401)
C8: (53.731,100.367,32.040)
C2: (53.237,96.646,29.822)
C6: (55.350,97.834,30.202)
C5: (54.537,98.755,30.912)
C4: (53.183,98.524,30.981)
P: (53.259,103.802,35.034)
C4': (50.595,101.162,33.782)
C2': (50.861,98.893,33.222)
O2': (49.497,98.548,33.115)
N1: (54.595,96.786,29.684)
N2: (52.687,95.566,29.263)
N3: (52.473,97.501,30.463)
N7: (54.870,99.918,31.590)
N9: (52.668,99.568,31.702)
O5': (52.505,102.495,34.504)
O3': (50.456,99.437,35.545)
OP1: (40.696,100.046,34.894)
OP2: (40.450,99.154,32.502)
C3': (45.162,99.991,33.631)
C1': (46.425,98.044,33.230)
C5': (43.354,98.768,34.994)
O4': (45.388,97.720,34.143)
C8: (44.864,97.037,31.489)
O2': (47.551,99.956,34.123)
C6: (46.925,96.075,28.811)
C5: (46.234,96.530,29.945)
C4: (46.979,97.154,30.927)
P: (40.981,99.003,33.882)
C4': (44.818,98.942,34.669)
C2': (46.556,99.568,33.200)
C2: (48.840,96.938,29.774)
N1: (48.254,96.307,28.749)
N3: (48.300,97.394,30.902)
N6: (46.343,95.422,27.808)
N7: (44.895,96.473,30.307)
N9: (46.094,97.450,31.936)
O5': (42.560,98.792,33.798)
O3': (45.148,101.283,34.200)
Image (generated by PyMOL):
PyMOL image
show in jmol