Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8O:A540:A508
Extra
PDB:
ATOM 1 O3' G A 539 -62.711 49.803 71.368 1.00 14.59 O
ATOM 2 P G A 540 -61.459 48.916 71.834 1.00 4.78 P
ATOM 3 OP1 G A 540 -61.315 47.789 70.858 1.00 4.78 O
ATOM 4 OP2 G A 540 -61.666 48.600 73.274 1.00 4.78 O
ATOM 5 O5' G A 540 -60.234 49.921 71.689 1.00 4.78 O
ATOM 6 C5' G A 540 -59.857 50.442 70.427 1.00 4.78 C
ATOM 7 C4' G A 540 -58.962 51.630 70.587 1.00 4.78 C
ATOM 8 O4' G A 540 -59.497 52.501 71.624 1.00 4.78 O
ATOM 9 C3' G A 540 -57.552 51.324 71.056 1.00 4.78 C
ATOM 10 O3' G A 540 -56.699 50.902 70.011 1.00 4.78 O
ATOM 11 C2' G A 540 -57.129 52.633 71.677 1.00 4.78 C
ATOM 12 O2' G A 540 -56.802 53.573 70.662 1.00 4.78 O
ATOM 13 C1' G A 540 -58.433 53.061 72.364 1.00 4.78 C
ATOM 14 N9 G A 540 -58.505 52.558 73.762 1.00 4.88 N
ATOM 15 C8 G A 540 -59.365 51.636 74.302 1.00 4.88 C
ATOM 16 N7 G A 540 -59.130 51.395 75.563 1.00 4.88 N
ATOM 17 C5 G A 540 -58.058 52.188 75.895 1.00 4.88 C
ATOM 18 C6 G A 540 -57.375 52.353 77.126 1.00 4.88 C
ATOM 19 O6 G A 540 -57.578 51.823 78.220 1.00 4.88 O
ATOM 20 N1 G A 540 -56.349 53.275 77.024 1.00 4.88 N
ATOM 21 C2 G A 540 -56.031 53.954 75.876 1.00 4.88 C
ATOM 22 N2 G A 540 -55.002 54.798 75.967 1.00 4.88 N
ATOM 23 N3 G A 540 -56.651 53.816 74.716 1.00 4.88 N
ATOM 24 C4 G A 540 -57.660 52.919 74.802 1.00 4.88 C
ATOM 25 P U A 541 -55.521 49.848 70.323 1.00 10.60 P
ATOM 26 OP1 U A 541 -55.071 49.299 69.011 1.00 10.60 O
ATOM 27 OP2 U A 541 -56.056 48.918 71.361 1.00 10.60 O
ATOM 28 O5' U A 541 -54.367 50.746 70.950 1.00 10.60 O
TER
ATOM 1 O3' A B 507 -50.949 57.087 68.252 1.00 5.59 O
ATOM 2 P A B 508 -51.855 58.255 67.684 1.00 11.16 P
ATOM 3 OP1 A B 508 -52.024 58.016 66.237 1.00 11.16 O
ATOM 4 OP2 A B 508 -51.241 59.519 68.124 1.00 11.16 O
ATOM 5 O5' A B 508 -53.243 58.030 68.439 1.00 11.16 O
ATOM 6 C5' A B 508 -54.075 56.932 68.116 1.00 11.16 C
ATOM 7 C4' A B 508 -54.759 56.384 69.339 1.00 11.16 C
ATOM 8 O4' A B 508 -53.763 56.040 70.333 1.00 11.16 O
ATOM 9 C3' A B 508 -55.710 57.339 70.056 1.00 11.16 C
ATOM 10 O3' A B 508 -57.015 57.338 69.503 1.00 11.16 O
ATOM 11 C2' A B 508 -55.681 56.852 71.489 1.00 11.16 C
ATOM 12 O2' A B 508 -56.585 55.781 71.674 1.00 11.16 O
ATOM 13 C1' A B 508 -54.253 56.324 71.628 1.00 11.16 C
ATOM 14 N9 A B 508 -53.385 57.324 72.263 1.00 12.20 N
ATOM 15 C8 A B 508 -52.905 58.453 71.677 1.00 12.20 C
ATOM 16 N7 A B 508 -52.193 59.184 72.482 1.00 12.20 N
ATOM 17 C5 A B 508 -52.229 58.500 73.670 1.00 12.20 C
ATOM 18 C6 A B 508 -51.658 58.789 74.896 1.00 12.20 C
ATOM 19 N6 A B 508 -50.917 59.874 75.118 1.00 12.20 N
ATOM 20 N1 A B 508 -51.881 57.918 75.880 1.00 12.20 N
ATOM 21 C2 A B 508 -52.621 56.852 75.615 1.00 12.20 C
ATOM 22 N3 A B 508 -53.201 56.475 74.505 1.00 12.20 N
ATOM 23 C4 A B 508 -52.961 57.357 73.558 1.00 12.20 C
ATOM 24 P C B 509 -57.267 57.929 68.028 1.00 14.19 P
ATOM 25 OP1 C B 509 -57.136 56.795 67.077 1.00 14.19 O
ATOM 26 OP2 C B 509 -56.366 59.110 67.855 1.00 14.19 O
ATOM 27 O5' C B 509 -58.779 58.398 68.099 1.00 14.19 O
TER
ATOM 2 P G A 540 -61.459 48.916 71.834 1.00 4.78 P
ATOM 3 OP1 G A 540 -61.315 47.789 70.858 1.00 4.78 O
ATOM 4 OP2 G A 540 -61.666 48.600 73.274 1.00 4.78 O
ATOM 5 O5' G A 540 -60.234 49.921 71.689 1.00 4.78 O
ATOM 6 C5' G A 540 -59.857 50.442 70.427 1.00 4.78 C
ATOM 7 C4' G A 540 -58.962 51.630 70.587 1.00 4.78 C
ATOM 8 O4' G A 540 -59.497 52.501 71.624 1.00 4.78 O
ATOM 9 C3' G A 540 -57.552 51.324 71.056 1.00 4.78 C
ATOM 10 O3' G A 540 -56.699 50.902 70.011 1.00 4.78 O
ATOM 11 C2' G A 540 -57.129 52.633 71.677 1.00 4.78 C
ATOM 12 O2' G A 540 -56.802 53.573 70.662 1.00 4.78 O
ATOM 13 C1' G A 540 -58.433 53.061 72.364 1.00 4.78 C
ATOM 14 N9 G A 540 -58.505 52.558 73.762 1.00 4.88 N
ATOM 15 C8 G A 540 -59.365 51.636 74.302 1.00 4.88 C
ATOM 16 N7 G A 540 -59.130 51.395 75.563 1.00 4.88 N
ATOM 17 C5 G A 540 -58.058 52.188 75.895 1.00 4.88 C
ATOM 18 C6 G A 540 -57.375 52.353 77.126 1.00 4.88 C
ATOM 19 O6 G A 540 -57.578 51.823 78.220 1.00 4.88 O
ATOM 20 N1 G A 540 -56.349 53.275 77.024 1.00 4.88 N
ATOM 21 C2 G A 540 -56.031 53.954 75.876 1.00 4.88 C
ATOM 22 N2 G A 540 -55.002 54.798 75.967 1.00 4.88 N
ATOM 23 N3 G A 540 -56.651 53.816 74.716 1.00 4.88 N
ATOM 24 C4 G A 540 -57.660 52.919 74.802 1.00 4.88 C
ATOM 25 P U A 541 -55.521 49.848 70.323 1.00 10.60 P
ATOM 26 OP1 U A 541 -55.071 49.299 69.011 1.00 10.60 O
ATOM 27 OP2 U A 541 -56.056 48.918 71.361 1.00 10.60 O
ATOM 28 O5' U A 541 -54.367 50.746 70.950 1.00 10.60 O
TER
ATOM 1 O3' A B 507 -50.949 57.087 68.252 1.00 5.59 O
ATOM 2 P A B 508 -51.855 58.255 67.684 1.00 11.16 P
ATOM 3 OP1 A B 508 -52.024 58.016 66.237 1.00 11.16 O
ATOM 4 OP2 A B 508 -51.241 59.519 68.124 1.00 11.16 O
ATOM 5 O5' A B 508 -53.243 58.030 68.439 1.00 11.16 O
ATOM 6 C5' A B 508 -54.075 56.932 68.116 1.00 11.16 C
ATOM 7 C4' A B 508 -54.759 56.384 69.339 1.00 11.16 C
ATOM 8 O4' A B 508 -53.763 56.040 70.333 1.00 11.16 O
ATOM 9 C3' A B 508 -55.710 57.339 70.056 1.00 11.16 C
ATOM 10 O3' A B 508 -57.015 57.338 69.503 1.00 11.16 O
ATOM 11 C2' A B 508 -55.681 56.852 71.489 1.00 11.16 C
ATOM 12 O2' A B 508 -56.585 55.781 71.674 1.00 11.16 O
ATOM 13 C1' A B 508 -54.253 56.324 71.628 1.00 11.16 C
ATOM 14 N9 A B 508 -53.385 57.324 72.263 1.00 12.20 N
ATOM 15 C8 A B 508 -52.905 58.453 71.677 1.00 12.20 C
ATOM 16 N7 A B 508 -52.193 59.184 72.482 1.00 12.20 N
ATOM 17 C5 A B 508 -52.229 58.500 73.670 1.00 12.20 C
ATOM 18 C6 A B 508 -51.658 58.789 74.896 1.00 12.20 C
ATOM 19 N6 A B 508 -50.917 59.874 75.118 1.00 12.20 N
ATOM 20 N1 A B 508 -51.881 57.918 75.880 1.00 12.20 N
ATOM 21 C2 A B 508 -52.621 56.852 75.615 1.00 12.20 C
ATOM 22 N3 A B 508 -53.201 56.475 74.505 1.00 12.20 N
ATOM 23 C4 A B 508 -52.961 57.357 73.558 1.00 12.20 C
ATOM 24 P C B 509 -57.267 57.929 68.028 1.00 14.19 P
ATOM 25 OP1 C B 509 -57.136 56.795 67.077 1.00 14.19 O
ATOM 26 OP2 C B 509 -56.366 59.110 67.855 1.00 14.19 O
ATOM 27 O5' C B 509 -58.779 58.398 68.099 1.00 14.19 O
TER
Atoms:
OP1: (-61.315,47.789,70.858)
OP2: (-61.666,48.600,73.274)
C3': (-57.552,51.324,71.056)
C1': (-58.433,53.061,72.364)
C5': (-59.857,50.442,70.427)
O6: (-57.578,51.823,78.220)
O4': (-59.497,52.501,71.624)
C8: (-59.365,51.636,74.302)
C2: (-56.031,53.954,75.876)
C6: (-57.375,52.353,77.126)
C5: (-58.058,52.188,75.895)
C4: (-57.660,52.919,74.802)
P: (-61.459,48.916,71.834)
C4': (-58.962,51.630,70.587)
C2': (-57.129,52.633,71.677)
O2': (-56.802,53.573,70.662)
N1: (-56.349,53.275,77.024)
N2: (-55.002,54.798,75.967)
N3: (-56.651,53.816,74.716)
N7: (-59.130,51.395,75.563)
N9: (-58.505,52.558,73.762)
O5': (-60.234,49.921,71.689)
O3': (-56.699,50.902,70.011)
OP2: (-61.666,48.600,73.274)
C3': (-57.552,51.324,71.056)
C1': (-58.433,53.061,72.364)
C5': (-59.857,50.442,70.427)
O6: (-57.578,51.823,78.220)
O4': (-59.497,52.501,71.624)
C8: (-59.365,51.636,74.302)
C2: (-56.031,53.954,75.876)
C6: (-57.375,52.353,77.126)
C5: (-58.058,52.188,75.895)
C4: (-57.660,52.919,74.802)
P: (-61.459,48.916,71.834)
C4': (-58.962,51.630,70.587)
C2': (-57.129,52.633,71.677)
O2': (-56.802,53.573,70.662)
N1: (-56.349,53.275,77.024)
N2: (-55.002,54.798,75.967)
N3: (-56.651,53.816,74.716)
N7: (-59.130,51.395,75.563)
N9: (-58.505,52.558,73.762)
O5': (-60.234,49.921,71.689)
O3': (-56.699,50.902,70.011)
OP1: (-52.024,58.016,66.237)
OP2: (-51.241,59.519,68.124)
C3': (-55.710,57.339,70.056)
C1': (-54.253,56.324,71.628)
C5': (-54.075,56.932,68.116)
O4': (-53.763,56.040,70.333)
C8: (-52.905,58.453,71.677)
O2': (-56.585,55.781,71.674)
C6: (-51.658,58.789,74.896)
C5: (-52.229,58.500,73.670)
C4: (-52.961,57.357,73.558)
P: (-51.855,58.255,67.684)
C4': (-54.759,56.384,69.339)
C2': (-55.681,56.852,71.489)
C2: (-52.621,56.852,75.615)
N1: (-51.881,57.918,75.880)
N3: (-53.201,56.475,74.505)
N6: (-50.917,59.874,75.118)
N7: (-52.193,59.184,72.482)
N9: (-53.385,57.324,72.263)
O5': (-53.243,58.030,68.439)
O3': (-57.015,57.338,69.503)
OP2: (-51.241,59.519,68.124)
C3': (-55.710,57.339,70.056)
C1': (-54.253,56.324,71.628)
C5': (-54.075,56.932,68.116)
O4': (-53.763,56.040,70.333)
C8: (-52.905,58.453,71.677)
O2': (-56.585,55.781,71.674)
C6: (-51.658,58.789,74.896)
C5: (-52.229,58.500,73.670)
C4: (-52.961,57.357,73.558)
P: (-51.855,58.255,67.684)
C4': (-54.759,56.384,69.339)
C2': (-55.681,56.852,71.489)
C2: (-52.621,56.852,75.615)
N1: (-51.881,57.918,75.880)
N3: (-53.201,56.475,74.505)
N6: (-50.917,59.874,75.118)
N7: (-52.193,59.184,72.482)
N9: (-53.385,57.324,72.263)
O5': (-53.243,58.030,68.439)
O3': (-57.015,57.338,69.503)
Image (generated by PyMOL):