Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YRJ:A1:A2
Extra
PDB:
ATOM 1 P U A 1 50.116 10.565 -1.035 1.00 48.55 P
ATOM 2 OP1 U A 1 51.355 11.116 -0.430 1.00 45.79 O
ATOM 3 OP2 U A 1 49.914 9.095 -1.073 1.00 50.71 O
ATOM 4 O5' U A 1 48.816 11.177 -0.312 1.00 46.76 O
ATOM 5 C5' U A 1 47.471 10.829 -0.717 1.00 45.04 C
ATOM 6 C4' U A 1 46.521 10.744 0.490 1.00 45.41 C
ATOM 7 O4' U A 1 46.679 9.453 1.115 1.00 45.00 O
ATOM 8 C3' U A 1 46.706 11.780 1.596 1.00 45.71 C
ATOM 9 O3' U A 1 45.876 12.963 1.519 1.00 46.49 O
ATOM 10 C2' U A 1 46.336 11.036 2.880 1.00 45.82 C
ATOM 11 O2' U A 1 45.003 11.239 3.298 1.00 52.04 O
ATOM 12 C1' U A 1 46.525 9.568 2.506 1.00 45.28 C
ATOM 13 N1 U A 1 47.660 8.899 3.140 1.00 46.66 N
ATOM 14 C2 U A 1 47.528 8.499 4.452 1.00 47.33 C
ATOM 15 O2 U A 1 46.521 8.688 5.119 1.00 48.28 O
ATOM 16 N3 U A 1 48.621 7.850 4.963 1.00 49.15 N
ATOM 17 C4 U A 1 49.796 7.559 4.309 1.00 49.34 C
ATOM 18 O4 U A 1 50.661 6.897 4.891 1.00 52.00 O
ATOM 19 C5 U A 1 49.853 8.015 2.957 1.00 47.22 C
ATOM 20 C6 U A 1 48.810 8.661 2.437 1.00 46.52 C
ATOM 21 P G A 2 44.424 12.948 0.772 1.00 49.39 P
ATOM 22 OP1 G A 2 43.625 11.769 1.213 1.00 45.99 O
ATOM 23 OP2 G A 2 44.634 13.193 -0.684 1.00 47.25 O
ATOM 24 O5' G A 2 43.710 14.224 1.392 1.00 38.64 O
TER
ATOM 1 O3' U B 1 45.876 12.963 1.519 1.00 46.49 O
ATOM 2 P G B 2 44.424 12.948 0.772 1.00 49.39 P
ATOM 3 OP1 G B 2 43.625 11.769 1.213 1.00 45.99 O
ATOM 4 OP2 G B 2 44.634 13.193 -0.684 1.00 47.25 O
ATOM 5 O5' G B 2 43.710 14.224 1.392 1.00 38.64 O
ATOM 6 C5' G B 2 44.511 15.209 1.997 1.00 39.63 C
ATOM 7 C4' G B 2 43.685 16.381 2.418 1.00 38.25 C
ATOM 8 O4' G B 2 42.966 16.904 1.274 1.00 36.42 O
ATOM 9 C3' G B 2 42.625 16.068 3.446 1.00 36.85 C
ATOM 10 O3' G B 2 43.210 16.162 4.736 1.00 38.18 O
ATOM 11 C2' G B 2 41.619 17.179 3.208 1.00 35.69 C
ATOM 12 O2' G B 2 41.999 18.365 3.851 1.00 37.02 O
ATOM 13 C1' G B 2 41.697 17.344 1.687 1.00 35.47 C
ATOM 14 N9 G B 2 40.721 16.496 1.031 1.00 33.19 N
ATOM 15 C8 G B 2 40.940 15.578 0.036 1.00 32.87 C
ATOM 16 N7 G B 2 39.858 14.944 -0.317 1.00 31.55 N
ATOM 17 C5 G B 2 38.873 15.481 0.494 1.00 30.83 C
ATOM 18 C6 G B 2 37.510 15.180 0.575 1.00 29.24 C
ATOM 19 O6 G B 2 36.894 14.336 -0.051 1.00 27.74 O
ATOM 20 N1 G B 2 36.860 15.979 1.516 1.00 29.09 N
ATOM 21 C2 G B 2 37.476 16.941 2.292 1.00 30.36 C
ATOM 22 N2 G B 2 36.710 17.616 3.128 1.00 31.18 N
ATOM 23 N3 G B 2 38.762 17.216 2.238 1.00 30.20 N
ATOM 24 C4 G B 2 39.394 16.452 1.319 1.00 32.08 C
ATOM 25 P C B 3 42.703 15.194 5.903 1.00 37.95 P
ATOM 26 OP1 C B 3 43.723 15.130 6.983 1.00 37.96 O
ATOM 27 OP2 C B 3 42.232 13.959 5.234 1.00 39.76 O
ATOM 28 O5' C B 3 41.413 15.891 6.512 1.00 37.78 O
TER
ATOM 2 OP1 U A 1 51.355 11.116 -0.430 1.00 45.79 O
ATOM 3 OP2 U A 1 49.914 9.095 -1.073 1.00 50.71 O
ATOM 4 O5' U A 1 48.816 11.177 -0.312 1.00 46.76 O
ATOM 5 C5' U A 1 47.471 10.829 -0.717 1.00 45.04 C
ATOM 6 C4' U A 1 46.521 10.744 0.490 1.00 45.41 C
ATOM 7 O4' U A 1 46.679 9.453 1.115 1.00 45.00 O
ATOM 8 C3' U A 1 46.706 11.780 1.596 1.00 45.71 C
ATOM 9 O3' U A 1 45.876 12.963 1.519 1.00 46.49 O
ATOM 10 C2' U A 1 46.336 11.036 2.880 1.00 45.82 C
ATOM 11 O2' U A 1 45.003 11.239 3.298 1.00 52.04 O
ATOM 12 C1' U A 1 46.525 9.568 2.506 1.00 45.28 C
ATOM 13 N1 U A 1 47.660 8.899 3.140 1.00 46.66 N
ATOM 14 C2 U A 1 47.528 8.499 4.452 1.00 47.33 C
ATOM 15 O2 U A 1 46.521 8.688 5.119 1.00 48.28 O
ATOM 16 N3 U A 1 48.621 7.850 4.963 1.00 49.15 N
ATOM 17 C4 U A 1 49.796 7.559 4.309 1.00 49.34 C
ATOM 18 O4 U A 1 50.661 6.897 4.891 1.00 52.00 O
ATOM 19 C5 U A 1 49.853 8.015 2.957 1.00 47.22 C
ATOM 20 C6 U A 1 48.810 8.661 2.437 1.00 46.52 C
ATOM 21 P G A 2 44.424 12.948 0.772 1.00 49.39 P
ATOM 22 OP1 G A 2 43.625 11.769 1.213 1.00 45.99 O
ATOM 23 OP2 G A 2 44.634 13.193 -0.684 1.00 47.25 O
ATOM 24 O5' G A 2 43.710 14.224 1.392 1.00 38.64 O
TER
ATOM 1 O3' U B 1 45.876 12.963 1.519 1.00 46.49 O
ATOM 2 P G B 2 44.424 12.948 0.772 1.00 49.39 P
ATOM 3 OP1 G B 2 43.625 11.769 1.213 1.00 45.99 O
ATOM 4 OP2 G B 2 44.634 13.193 -0.684 1.00 47.25 O
ATOM 5 O5' G B 2 43.710 14.224 1.392 1.00 38.64 O
ATOM 6 C5' G B 2 44.511 15.209 1.997 1.00 39.63 C
ATOM 7 C4' G B 2 43.685 16.381 2.418 1.00 38.25 C
ATOM 8 O4' G B 2 42.966 16.904 1.274 1.00 36.42 O
ATOM 9 C3' G B 2 42.625 16.068 3.446 1.00 36.85 C
ATOM 10 O3' G B 2 43.210 16.162 4.736 1.00 38.18 O
ATOM 11 C2' G B 2 41.619 17.179 3.208 1.00 35.69 C
ATOM 12 O2' G B 2 41.999 18.365 3.851 1.00 37.02 O
ATOM 13 C1' G B 2 41.697 17.344 1.687 1.00 35.47 C
ATOM 14 N9 G B 2 40.721 16.496 1.031 1.00 33.19 N
ATOM 15 C8 G B 2 40.940 15.578 0.036 1.00 32.87 C
ATOM 16 N7 G B 2 39.858 14.944 -0.317 1.00 31.55 N
ATOM 17 C5 G B 2 38.873 15.481 0.494 1.00 30.83 C
ATOM 18 C6 G B 2 37.510 15.180 0.575 1.00 29.24 C
ATOM 19 O6 G B 2 36.894 14.336 -0.051 1.00 27.74 O
ATOM 20 N1 G B 2 36.860 15.979 1.516 1.00 29.09 N
ATOM 21 C2 G B 2 37.476 16.941 2.292 1.00 30.36 C
ATOM 22 N2 G B 2 36.710 17.616 3.128 1.00 31.18 N
ATOM 23 N3 G B 2 38.762 17.216 2.238 1.00 30.20 N
ATOM 24 C4 G B 2 39.394 16.452 1.319 1.00 32.08 C
ATOM 25 P C B 3 42.703 15.194 5.903 1.00 37.95 P
ATOM 26 OP1 C B 3 43.723 15.130 6.983 1.00 37.96 O
ATOM 27 OP2 C B 3 42.232 13.959 5.234 1.00 39.76 O
ATOM 28 O5' C B 3 41.413 15.891 6.512 1.00 37.78 O
TER
Atoms:
C4: (49.796,7.559,4.309)
N3: (48.621,7.850,4.963)
OP1: (51.355,11.116,-0.430)
OP2: (49.914,9.095,-1.073)
C2: (47.528,8.499,4.452)
C1': (46.525,9.568,2.506)
C3': (46.706,11.780,1.596)
O5': (48.816,11.177,-0.312)
O4': (46.679,9.453,1.115)
C5': (47.471,10.829,-0.717)
P: (50.116,10.565,-1.035)
C4': (46.521,10.744,0.490)
C2': (46.336,11.036,2.880)
O2': (45.003,11.239,3.298)
N1: (47.660,8.899,3.140)
O4: (50.661,6.897,4.891)
O2: (46.521,8.688,5.119)
C6: (48.810,8.661,2.437)
C5: (49.853,8.015,2.957)
O3': (45.876,12.963,1.519)
N3: (48.621,7.850,4.963)
OP1: (51.355,11.116,-0.430)
OP2: (49.914,9.095,-1.073)
C2: (47.528,8.499,4.452)
C1': (46.525,9.568,2.506)
C3': (46.706,11.780,1.596)
O5': (48.816,11.177,-0.312)
O4': (46.679,9.453,1.115)
C5': (47.471,10.829,-0.717)
P: (50.116,10.565,-1.035)
C4': (46.521,10.744,0.490)
C2': (46.336,11.036,2.880)
O2': (45.003,11.239,3.298)
N1: (47.660,8.899,3.140)
O4: (50.661,6.897,4.891)
O2: (46.521,8.688,5.119)
C6: (48.810,8.661,2.437)
C5: (49.853,8.015,2.957)
O3': (45.876,12.963,1.519)
OP1: (43.625,11.769,1.213)
OP2: (44.634,13.193,-0.684)
C3': (42.625,16.068,3.446)
C1': (41.697,17.344,1.687)
C5': (44.511,15.209,1.997)
O6: (36.894,14.336,-0.051)
O4': (42.966,16.904,1.274)
C8: (40.940,15.578,0.036)
C2: (37.476,16.941,2.292)
C6: (37.510,15.180,0.575)
C5: (38.873,15.481,0.494)
C4: (39.394,16.452,1.319)
P: (44.424,12.948,0.772)
C4': (43.685,16.381,2.418)
C2': (41.619,17.179,3.208)
O2': (41.999,18.365,3.851)
N1: (36.860,15.979,1.516)
N2: (36.710,17.616,3.128)
N3: (38.762,17.216,2.238)
N7: (39.858,14.944,-0.317)
N9: (40.721,16.496,1.031)
O5': (43.710,14.224,1.392)
O3': (43.210,16.162,4.736)
OP2: (44.634,13.193,-0.684)
C3': (42.625,16.068,3.446)
C1': (41.697,17.344,1.687)
C5': (44.511,15.209,1.997)
O6: (36.894,14.336,-0.051)
O4': (42.966,16.904,1.274)
C8: (40.940,15.578,0.036)
C2: (37.476,16.941,2.292)
C6: (37.510,15.180,0.575)
C5: (38.873,15.481,0.494)
C4: (39.394,16.452,1.319)
P: (44.424,12.948,0.772)
C4': (43.685,16.381,2.418)
C2': (41.619,17.179,3.208)
O2': (41.999,18.365,3.851)
N1: (36.860,15.979,1.516)
N2: (36.710,17.616,3.128)
N3: (38.762,17.216,2.238)
N7: (39.858,14.944,-0.317)
N9: (40.721,16.496,1.031)
O5': (43.710,14.224,1.392)
O3': (43.210,16.162,4.736)
Image (generated by PyMOL):